Strain Fitness in Pseudomonas sp. RS175 around PFR28_05208

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
5,953,920	+		PFR28_05207	0.61	-0.5
5,953,929	+		PFR28_05207	0.61	+0.9
5,953,929	+		PFR28_05207	0.61	+1.3
5,953,929	+		PFR28_05207	0.61	-0.5
5,953,929	+		PFR28_05207	0.61	-0.0
5,953,929	+		PFR28_05207	0.61	+1.8
5,953,929	+		PFR28_05207	0.61	-1.5
5,953,930	-		PFR28_05207	0.61	+0.9
5,953,930	-		PFR28_05207	0.61	+0.2
5,953,930	-		PFR28_05207	0.61	-1.5
5,953,930	-		PFR28_05207	0.61	-1.6
5,953,930	-		PFR28_05207	0.61	-0.3
5,953,930	-		PFR28_05207	0.61	+1.8
5,954,313	+		PFR28_05207	0.84	-0.3
5,954,313	+		PFR28_05207	0.84	-0.5
5,954,313	+		PFR28_05207	0.84	-0.4
5,954,313	+		PFR28_05207	0.84	-1.4
5,954,313	+		PFR28_05207	0.84	+0.2
5,954,313	+		PFR28_05207	0.84	+0.2
5,954,313	+		PFR28_05207	0.84	-0.2
5,954,313	+		PFR28_05207	0.84	-0.5
5,954,314	-		PFR28_05207	0.84	+1.6
5,954,314	-		PFR28_05207	0.84	+0.8
5,954,314	-		PFR28_05207	0.84	-0.7
5,954,314	-		PFR28_05207	0.84	-0.4
5,954,314	-		PFR28_05207	0.84	+2.8
5,954,314	-		PFR28_05207	0.84	+1.0
5,954,314	-		PFR28_05207	0.84	-1.6
5,954,314	-		PFR28_05207	0.84	+0.7
5,954,314	-		PFR28_05207	0.84	-0.2
5,954,314	-		PFR28_05207	0.84	+0.2
5,954,551	+				-0.5
5,954,551	+				+0.1
5,954,551	+				+1.9
5,954,551	+				+0.9
5,954,551	+				+2.3
5,954,552	-				+0.2
5,954,552	-				-1.2
5,954,552	-				+1.2
5,954,552	-				+0.2
5,954,552	-				+2.8
5,954,553	+				+0.6
5,954,553	+				+0.2
5,954,553	+				+1.8
5,954,553	+				-2.5
5,954,553	+				-1.9
5,954,553	+				-0.1
5,954,553	+				-2.0
5,954,553	+				-1.2
5,954,553	+				-1.9
5,954,553	+				-0.2
5,954,553	+				-0.5
5,954,553	+				+3.8
5,954,553	+				-1.8
5,954,553	+				-1.0
5,954,554	-				+0.2
5,954,554	-				+2.8
5,954,554	-				-0.2
5,954,554	-				-0.7
5,954,554	-				+0.7
5,954,554	-				-0.3
5,954,554	-				-1.1
5,954,554	-				+1.6
5,954,554	-				-0.4
5,954,554	-				+0.9
5,954,555	+				+1.8
5,954,555	+				+0.8
5,954,555	+				-0.2
5,954,555	+				+1.2
5,954,555	+				-0.7
5,954,555	+				+0.8
5,954,555	+				+0.8
5,954,556	-				+2.0
5,954,556	-				+1.8
5,954,556	-				+0.4
5,954,556	-				-0.2
5,954,556	-				+1.8
5,954,556	-				-0.8
5,954,556	-				+0.5
5,954,556	-				+0.1
5,954,556	-				-0.7
5,954,685	+				-0.7
5,954,685	+				-0.9
5,954,686	-				+0.7
5,954,704	-				+1.8
5,954,790	-				+1.0
5,955,007	+				-0.7
5,955,007	+				-0.4
5,955,007	+				-0.3
5,955,008	-				-0.5
5,955,008	-				+1.2
5,955,008	-				+0.1
5,955,018	+				+0.7
5,955,519	+				-1.4
5,955,520	-				+0.5
5,955,587	-		PFR28_05208	0.10	+1.3
5,955,715	-		PFR28_05208	0.12	+0.8
5,955,715	-		PFR28_05208	0.12	+0.4
5,955,718	+		PFR28_05208	0.12	-0.1
5,955,718	+		PFR28_05208	0.12	-0.9
5,955,718	+		PFR28_05208	0.12	+1.0
5,955,719	-		PFR28_05208	0.12	-0.4
5,955,719	-		PFR28_05208	0.12	+0.5
5,955,719	-		PFR28_05208	0.12	+0.2
5,955,776	+		PFR28_05208	0.13	-1.9
5,955,776	+		PFR28_05208	0.13	+0.7
5,955,776	+		PFR28_05208	0.13	-0.9
5,955,777	-		PFR28_05208	0.13	+1.0
5,955,777	-		PFR28_05208	0.13	-0.2
5,955,777	-		PFR28_05208	0.13	+0.5
5,955,805	+		PFR28_05208	0.13	-0.6
5,955,806	-		PFR28_05208	0.13	-0.4
5,955,806	-		PFR28_05208	0.13	+0.4
5,955,858	+		PFR28_05208	0.14	+0.4
5,955,947	+		PFR28_05208	0.15	+0.1
5,955,958	+		PFR28_05208	0.15	+0.5
5,955,958	+		PFR28_05208	0.15	+1.0
5,955,959	-		PFR28_05208	0.15	+1.2
5,955,959	-		PFR28_05208	0.15	-0.9
5,955,967	+		PFR28_05208	0.15	-1.4
5,955,968	-		PFR28_05208	0.15	+0.7
5,955,968	-		PFR28_05208	0.15	-0.3
5,955,968	-		PFR28_05208	0.15	-0.7
5,956,079	-		PFR28_05208	0.17	-0.4
5,956,186	+		PFR28_05208	0.18	+0.7
5,956,186	+		PFR28_05208	0.18	-1.3
5,956,186	+		PFR28_05208	0.18	-1.7
5,956,186	+		PFR28_05208	0.18	-1.1
5,956,186	+		PFR28_05208	0.18	-0.3
5,956,186	+		PFR28_05208	0.18	+0.2
5,956,186	+		PFR28_05208	0.18	-0.2
5,956,186	+		PFR28_05208	0.18	+0.2
5,956,186	+		PFR28_05208	0.18	-0.9
5,956,187	-		PFR28_05208	0.19	+0.3
5,956,187	-		PFR28_05208	0.19	+1.6
5,956,187	-		PFR28_05208	0.19	+1.5
5,956,187	-		PFR28_05208	0.19	-0.9
5,956,187	-		PFR28_05208	0.19	-3.0
5,956,363	+		PFR28_05208	0.21	-0.4
5,956,363	+		PFR28_05208	0.21	-0.2
5,956,364	-		PFR28_05208	0.21	+3.0
5,956,364	-		PFR28_05208	0.21	-0.2
5,956,364	-		PFR28_05208	0.21	+1.0
5,956,364	-		PFR28_05208	0.21	+3.4
5,956,366	+		PFR28_05208	0.21	-0.2
5,956,366	+		PFR28_05208	0.21	-0.2
5,956,405	+		PFR28_05208	0.22	-0.4
5,956,405	+		PFR28_05208	0.22	+2.8
5,956,405	+		PFR28_05208	0.22	+0.8
5,956,405	+		PFR28_05208	0.22	-0.6
5,956,405	+		PFR28_05208	0.22	+1.1
5,956,406	-		PFR28_05208	0.22	-0.8
5,956,406	-		PFR28_05208	0.22	+0.5
5,956,406	-		PFR28_05208	0.22	-0.8
5,956,406	-		PFR28_05208	0.22	-1.4
5,956,406	-		PFR28_05208	0.22	+1.1
5,956,406	-		PFR28_05208	0.22	+0.7
5,956,406	-		PFR28_05208	0.22	-0.8
5,956,505	+		PFR28_05208	0.23	+0.9
5,956,505	+		PFR28_05208	0.23	+0.8
5,956,506	-		PFR28_05208	0.23	+1.7
5,956,640	-		PFR28_05208	0.25	+1.4
5,957,004	+		PFR28_05208	0.30	-0.2
5,957,110	+		PFR28_05208	0.32	+0.6
5,957,110	+		PFR28_05208	0.32	+0.5
5,957,110	+		PFR28_05208	0.32	-0.8
5,957,110	+		PFR28_05208	0.32	+1.1
5,957,111	-		PFR28_05208	0.32	+0.5
5,957,111	-		PFR28_05208	0.32	-0.7
5,957,134	+		PFR28_05208	0.32	+0.9
5,957,340	-		PFR28_05208	0.35	-2.0
5,957,340	-		PFR28_05208	0.35	-1.8
5,957,504	-		PFR28_05208	0.37	+0.8
5,957,504	-		PFR28_05208	0.37	+0.0
5,957,727	+		PFR28_05208	0.40	+1.0
5,957,728	-		PFR28_05208	0.40	+1.1
5,957,728	-		PFR28_05208	0.40	+1.2
5,957,728	-		PFR28_05208	0.40	+0.0
5,957,731	+		PFR28_05208	0.40	+1.2
5,957,731	+		PFR28_05208	0.40	-0.9
5,957,731	+		PFR28_05208	0.40	+1.8
5,957,731	+		PFR28_05208	0.40	+1.3
5,957,732	-		PFR28_05208	0.40	+0.7
5,957,732	-		PFR28_05208	0.40	+0.3
5,957,740	+		PFR28_05208	0.40	-2.3
5,957,740	+		PFR28_05208	0.40	+1.2
5,957,741	-		PFR28_05208	0.40	-0.1
5,958,268	+		PFR28_05208	0.48	+0.9
5,958,269	-		PFR28_05208	0.48	-0.0
5,958,269	-		PFR28_05208	0.48	+0.4
5,958,269	-		PFR28_05208	0.48	+0.1
5,958,269	-		PFR28_05208	0.48	+0.4
5,958,445	+		PFR28_05208	0.50	+1.5
5,958,445	+		PFR28_05208	0.50	+0.2
5,958,445	+		PFR28_05208	0.50	-1.0
5,958,445	+		PFR28_05208	0.50	+0.5
5,958,446	-		PFR28_05208	0.50	-0.4
5,958,446	-		PFR28_05208	0.50	+1.2
5,958,446	-		PFR28_05208	0.50	-0.6
5,958,454	+		PFR28_05208	0.51	-0.2
5,958,454	+		PFR28_05208	0.51	+1.4
5,958,455	-		PFR28_05208	0.51	+2.4
5,958,640	+		PFR28_05208	0.53	-0.1
5,958,640	+		PFR28_05208	0.53	-0.6
5,958,640	+		PFR28_05208	0.53	+0.2
5,958,640	+		PFR28_05208	0.53	-1.2
5,958,640	+		PFR28_05208	0.53	-0.5
5,958,640	+		PFR28_05208	0.53	-1.1
5,958,640	+		PFR28_05208	0.53	+0.6
5,958,640	+		PFR28_05208	0.53	-1.8
5,958,641	-		PFR28_05208	0.53	-0.3
5,958,641	-		PFR28_05208	0.53	+2.0
5,958,641	-		PFR28_05208	0.53	-2.0
5,958,641	-		PFR28_05208	0.53	+0.3
5,958,687	+		PFR28_05208	0.54	-0.5
5,959,012	+		PFR28_05208	0.58	-2.2
5,959,013	-		PFR28_05208	0.58	+0.6
5,959,058	-		PFR28_05208	0.59	+0.2
5,959,058	-		PFR28_05208	0.59	-0.9
5,959,166	-		PFR28_05208	0.61	+0.3
5,959,166	-		PFR28_05208	0.61	+0.8
5,959,177	+		PFR28_05208	0.61	-1.2
5,959,177	+		PFR28_05208	0.61	-0.7
5,959,177	+		PFR28_05208	0.61	-0.2
5,959,177	+		PFR28_05208	0.61	+0.2
5,959,177	+		PFR28_05208	0.61	+0.3
5,959,177	+		PFR28_05208	0.61	+0.4
5,959,177	+		PFR28_05208	0.61	-0.8
5,959,177	+		PFR28_05208	0.61	+1.1
5,959,177	+		PFR28_05208	0.61	-0.4
5,959,178	-		PFR28_05208	0.61	+0.5
5,959,178	-		PFR28_05208	0.61	-1.2
5,959,178	-		PFR28_05208	0.61	+0.4
5,959,178	-		PFR28_05208	0.61	+0.5
5,959,178	-		PFR28_05208	0.61	+0.5
5,959,178	-		PFR28_05208	0.61	-0.2
5,959,178	-		PFR28_05208	0.61	+1.7
5,959,285	+		PFR28_05208	0.62	+0.6
5,959,286	-		PFR28_05208	0.62	-1.5
5,959,286	-		PFR28_05208	0.62	+0.8
5,959,286	-		PFR28_05208	0.62	+0.4
5,959,304	-		PFR28_05208	0.63	-0.6
5,959,304	-		PFR28_05208	0.63	+0.7
5,959,567	+		PFR28_05208	0.66	-2.4
5,959,567	+		PFR28_05208	0.66	+0.2
5,959,568	-		PFR28_05208	0.66	+0.8
5,959,629	-		PFR28_05208	0.67	+1.8
5,959,629	-		PFR28_05208	0.67	+1.2
5,959,783	+		PFR28_05208	0.69	-0.7
5,959,783	+		PFR28_05208	0.69	+3.8
5,959,801	+		PFR28_05208	0.70	+0.9
5,959,802	-		PFR28_05208	0.70	-0.7
5,959,802	-		PFR28_05208	0.70	-0.1
5,959,852	+		PFR28_05208	0.70	-1.6
5,959,852	+		PFR28_05208	0.70	+0.2
5,959,853	-		PFR28_05208	0.70	-0.8
5,959,879	+		PFR28_05208	0.71	-0.5
5,959,880	-		PFR28_05208	0.71	+0.9
5,959,880	-		PFR28_05208	0.71	+1.6
5,959,880	-		PFR28_05208	0.71	+0.5
5,959,882	-		PFR28_05208	0.71	-0.6
5,959,946	-		PFR28_05208	0.72	-0.7
5,960,137	+		PFR28_05208	0.74	-0.2
5,960,137	+		PFR28_05208	0.74	-1.0
5,960,138	-		PFR28_05208	0.74	-0.4
5,960,138	-		PFR28_05208	0.74	-0.6
5,960,138	-		PFR28_05208	0.74	-0.1
5,960,138	-		PFR28_05208	0.74	+3.8
5,960,246	+		PFR28_05208	0.76	-0.3
5,960,247	-		PFR28_05208	0.76	-0.5
5,960,247	-		PFR28_05208	0.76	+0.5
5,960,268	+		PFR28_05208	0.76	+0.2
5,960,269	-		PFR28_05208	0.76	+0.2
5,960,276	-		PFR28_05208	0.76	-1.2
5,960,276	-		PFR28_05208	0.76	+0.7
5,960,289	+		PFR28_05208	0.77	-2.0
5,960,290	-		PFR28_05208	0.77	+1.6
5,960,290	-		PFR28_05208	0.77	+0.3
5,960,290	-		PFR28_05208	0.77	-0.3
5,960,293	+		PFR28_05208	0.77	+0.2
5,960,293	+		PFR28_05208	0.77	-0.2
5,960,293	+		PFR28_05208	0.77	-0.6
5,960,293	+		PFR28_05208	0.77	+0.7
5,960,293	+		PFR28_05208	0.77	-1.9
5,960,293	+		PFR28_05208	0.77	-0.7
5,960,294	-		PFR28_05208	0.77	+0.8
5,960,294	-		PFR28_05208	0.77	+1.1
5,960,294	-		PFR28_05208	0.77	+0.3
5,960,294	-		PFR28_05208	0.77	-0.3
5,960,294	-		PFR28_05208	0.77	-1.2
5,960,294	-		PFR28_05208	0.77	+0.2
5,960,294	-		PFR28_05208	0.77	+0.5
5,960,294	-		PFR28_05208	0.77	+1.2
5,960,294	-		PFR28_05208	0.77	+0.5
5,960,294	-		PFR28_05208	0.77	+0.5
5,960,510	-		PFR28_05208	0.80	-0.5
5,960,510	-		PFR28_05208	0.80	-0.5
5,960,588	+		PFR28_05208	0.81	-1.6
5,960,610	+		PFR28_05208	0.81	+2.8
5,960,610	+		PFR28_05208	0.81	-0.0
5,960,611	-		PFR28_05208	0.81	+1.2
5,960,611	-		PFR28_05208	0.81	-0.3
5,960,611	-		PFR28_05208	0.81	-0.6
5,960,662	+		PFR28_05208	0.82	-0.2
5,960,663	-		PFR28_05208	0.82	-1.7
5,960,731	+		PFR28_05208	0.83	-1.0
5,960,731	+		PFR28_05208	0.83	-1.8
5,960,837	-		PFR28_05208	0.84	+1.1
5,960,837	-		PFR28_05208	0.84	+2.1
5,960,837	-		PFR28_05208	0.84	+0.8
5,961,050	+		PFR28_05208	0.87	-0.3
5,961,050	+		PFR28_05208	0.87	+0.1
5,961,051	-		PFR28_05208	0.87	+1.2
5,961,051	-		PFR28_05208	0.87	+0.1
5,961,051	-		PFR28_05208	0.87	+1.2
5,961,232	+		PFR28_05208	0.90	+1.3
5,961,233	-		PFR28_05208	0.90	+2.8
5,961,311	+				-1.0
5,961,312	-				-1.2
5,961,312	-				+0.4
5,961,416	-				-0.5
5,961,448	+				+0.2
5,961,448	+				+0.5
5,961,448	+				-1.3
5,961,449	-				-0.2
5,961,449	-				-0.6
5,961,449	-				-0.7
5,961,449	-				-0.9
5,961,449	-				-1.7
5,961,449	-				+1.7
5,961,449	-				-0.6
5,961,449	-				-0.7
5,961,449	-				-0.4
5,961,572	-				-0.2
5,961,631	-				+0.4
5,961,758	+				-0.6
5,961,759	-				-0.5
5,961,772	+				-0.7
5,961,773	-				+0.9
5,961,773	-				-1.9
5,961,890	+				-0.4
5,961,923	+				-0.0
5,961,924	-				-0.7
5,961,927	-				-1.4
5,961,927	-				+0.2
5,962,182	+		PFR28_05209	0.30	+0.3
5,962,182	+		PFR28_05209	0.30	+0.2
5,962,184	+		PFR28_05209	0.31	-0.9
5,962,185	-		PFR28_05209	0.31	+0.5
5,962,390	+		PFR28_05209	0.62	+3.2
5,962,391	-		PFR28_05209	0.62	+0.2
5,962,391	-		PFR28_05209	0.62	-0.3
5,962,429	+		PFR28_05209	0.68	+0.6
5,962,430	-		PFR28_05209	0.68	-0.8
5,962,430	-		PFR28_05209	0.68	-1.3
5,962,463	+		PFR28_05209	0.73	+0.8
5,962,494	-		PFR28_05209	0.78	+0.2
5,962,582	-				+1.3
5,962,583	+				-0.8
5,962,584	-				+0.9
5,962,584	-				-0.4
5,962,584	-				-0.2
5,962,670	-				+0.6
5,962,754	+				+0.8
5,962,799	+				+1.5
5,962,869	-				-0.5
5,962,889	+				+0.1
5,962,889	+				+0.8