Strain Fitness in Pseudomonas sp. RS175 around PFR28_04857

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
5,548,033	+		PFR28_04856	0.49	-3.7
5,548,033	+		PFR28_04856	0.49	-0.4
5,548,033	+		PFR28_04856	0.49	-0.3
5,548,034	-		PFR28_04856	0.49	+0.2
5,548,034	-		PFR28_04856	0.49	+1.5
5,548,034	-		PFR28_04856	0.49	-0.1
5,548,034	-		PFR28_04856	0.49	-0.2
5,548,034	-		PFR28_04856	0.49	-0.7
5,548,078	+		PFR28_04856	0.54	+0.2
5,548,079	-		PFR28_04856	0.54	+0.3
5,548,210	+		PFR28_04856	0.67	+1.9
5,548,210	+		PFR28_04856	0.67	-1.2
5,548,210	+		PFR28_04856	0.67	-1.8
5,548,211	-		PFR28_04856	0.67	+0.8
5,548,211	-		PFR28_04856	0.67	+0.4
5,548,211	-		PFR28_04856	0.67	-1.0
5,548,369	+		PFR28_04856	0.83	+2.5
5,548,430	+		PFR28_04856	0.89	-1.4
5,548,430	+		PFR28_04856	0.89	+0.2
5,548,430	+		PFR28_04856	0.89	-0.3
5,548,431	-		PFR28_04856	0.89	+1.7
5,548,431	-		PFR28_04856	0.89	-1.8
5,548,432	+		PFR28_04856	0.89	-1.3
5,548,432	+		PFR28_04856	0.89	-0.9
5,548,432	+		PFR28_04856	0.89	+0.2
5,548,432	+		PFR28_04856	0.89	+0.8
5,548,432	+		PFR28_04856	0.89	-0.1
5,548,432	+		PFR28_04856	0.89	-1.0
5,548,432	+		PFR28_04856	0.89	-0.5
5,548,433	-		PFR28_04856	0.89	+0.7
5,548,433	-		PFR28_04856	0.89	-0.9
5,548,433	-		PFR28_04856	0.89	-0.9
5,548,433	-		PFR28_04856	0.89	-2.8
5,548,433	-		PFR28_04856	0.89	-0.6
5,548,433	-		PFR28_04856	0.89	+0.8
5,548,433	-		PFR28_04856	0.89	+0.0
5,548,433	-		PFR28_04856	0.89	+0.2
5,548,433	-		PFR28_04856	0.89	-0.1
5,548,433	-		PFR28_04856	0.89	+1.2
5,548,433	-		PFR28_04856	0.89	+0.8
5,548,433	-		PFR28_04856	0.89	-0.1
5,548,433	-		PFR28_04856	0.89	-0.5
5,548,555	+				-1.7
5,548,556	-				-1.0
5,548,556	-				+1.9
5,548,571	+				+2.9
5,548,571	+				-0.1
5,548,571	+				+0.5
5,548,571	+				-1.6
5,548,572	-				-1.1
5,548,572	-				+0.9
5,548,573	+				+2.3
5,548,573	+				+1.9
5,548,574	-				+0.9
5,548,574	-				-0.4
5,548,574	-				+0.1
5,548,574	-				-1.1
5,548,574	-				-0.4
5,548,574	-				+1.0
5,548,574	-				+1.9
5,548,586	-				+1.2
5,548,717	+				-0.3
5,548,718	-				-1.0
5,548,718	-				-1.4
5,548,768	+				+0.2
5,548,768	+				+2.9
5,548,768	+				-1.5
5,548,768	+				+0.6
5,548,768	+				+0.6
5,548,768	+				+0.2
5,548,768	+				+0.2
5,548,768	+				+1.4
5,548,769	-				+1.2
5,548,769	-				+0.5
5,548,769	-				+0.9
5,548,769	-				+0.4
5,548,769	-				+0.9
5,548,769	-				+0.6
5,548,769	-				+0.7
5,548,769	-				-1.6
5,548,778	+				+0.5
5,548,779	-				+1.2
5,548,779	-				-0.3
5,548,827	+				+1.3
5,548,827	+				-0.2
5,548,827	+				+0.9
5,548,828	-				+2.3
5,548,828	-				+0.2
5,548,828	-				+0.2
5,548,828	-				+0.2
5,548,837	+				+1.9
5,548,837	+				+3.9
5,548,838	-				-2.5
5,548,847	+				-0.4
5,548,847	+				+0.4
5,548,847	+				+0.3
5,548,847	+				+1.8
5,548,847	+				-0.0
5,548,848	-				+0.3
5,548,848	-				+1.0
5,548,848	-				-0.5
5,548,876	-				-0.1
5,548,882	+				-1.5
5,548,882	+				-1.7
5,548,882	+				-1.4
5,548,882	+				+1.7
5,548,882	+				-0.6
5,548,883	-				-2.2
5,548,883	-				+0.1
5,548,883	-				+0.9
5,548,883	-				-0.9
5,548,883	-				-0.6
5,548,883	-				-1.4
5,548,883	-				+1.8
5,548,883	-				+1.9
5,548,883	-				-0.3
5,548,883	-				+0.3
5,548,891	-				-0.7
5,548,891	-				+0.3
5,548,900	+				-0.1
5,548,900	+				+1.8
5,548,922	+				-0.5
5,548,978	-				-1.1
5,549,075	+				+1.3
5,549,076	-				-0.6
5,549,092	+				+1.3
5,549,189	+				+0.7
5,549,192	+				+0.3
5,549,192	+				+0.1
5,549,192	+				-1.5
5,549,192	+				-2.0
5,549,192	+				-1.6
5,549,192	+				+0.2
5,549,192	+				-2.2
5,549,192	+				-0.8
5,549,192	+				-0.3
5,549,192	+				-1.6
5,549,192	+				+0.4
5,549,192	+				+1.3
5,549,192	+				-1.4
5,549,193	-				-0.2
5,549,193	-				-1.1
5,549,193	-				-2.5
5,549,193	-				+0.3
5,549,193	-				-0.6
5,549,193	-				-0.2
5,549,193	-				-0.3
5,549,193	-				-0.0
5,549,193	-				+0.2
5,549,193	-				-0.5
5,549,193	-				-0.7
5,549,213	+				+1.3
5,549,213	+				-0.8
5,549,213	+				-0.4
5,549,213	+				-1.2
5,549,214	-				+0.3
5,549,214	-				+0.7
5,549,214	-				+0.1
5,549,297	+		PFR28_04857	0.14	+2.5
5,549,297	+		PFR28_04857	0.14	-0.9
5,549,297	+		PFR28_04857	0.14	-2.0
5,549,297	+		PFR28_04857	0.14	-1.0
5,549,298	-		PFR28_04857	0.14	-1.0
5,549,298	-		PFR28_04857	0.14	-1.4
5,549,298	-		PFR28_04857	0.14	-0.3
5,549,507	+		PFR28_04857	0.24	+0.7
5,549,508	-		PFR28_04857	0.24	+1.3
5,549,687	+		PFR28_04857	0.33	-2.7
5,549,687	+		PFR28_04857	0.33	-1.0
5,549,687	+		PFR28_04857	0.33	+0.2
5,549,688	-		PFR28_04857	0.33	-2.4
5,549,688	-		PFR28_04857	0.33	-0.8
5,549,688	-		PFR28_04857	0.33	-0.7
5,549,688	-		PFR28_04857	0.33	-1.4
5,549,878	+		PFR28_04857	0.43	+0.2
5,549,878	+		PFR28_04857	0.43	-1.3
5,549,878	+		PFR28_04857	0.43	-0.7
5,549,879	-		PFR28_04857	0.43	+1.3
5,549,879	-		PFR28_04857	0.43	-0.3
5,549,903	+		PFR28_04857	0.44	+0.6
5,549,939	+		PFR28_04857	0.46	+1.3
5,549,940	-		PFR28_04857	0.46	-2.6
5,549,940	-		PFR28_04857	0.46	-1.9
5,549,945	+		PFR28_04857	0.46	+0.1
5,549,945	+		PFR28_04857	0.46	-0.6
5,549,946	-		PFR28_04857	0.46	-1.6
5,549,988	-		PFR28_04857	0.48	-1.0
5,550,212	+		PFR28_04857	0.60	-2.5
5,550,212	+		PFR28_04857	0.60	-0.4
5,550,212	+		PFR28_04857	0.60	+0.2
5,550,213	-		PFR28_04857	0.60	+0.4
5,550,213	-		PFR28_04857	0.60	-0.2
5,550,213	-		PFR28_04857	0.60	-1.3
5,550,230	+		PFR28_04857	0.61	-2.6
5,550,231	-		PFR28_04857	0.61	+0.2
5,550,268	+		PFR28_04857	0.62	-0.9
5,550,269	-		PFR28_04857	0.63	+1.2
5,550,269	-		PFR28_04857	0.63	-2.0
5,550,434	-		PFR28_04857	0.71	-1.1
5,550,653	+		PFR28_04857	0.82	-0.1
5,550,803	+		PFR28_04857	0.89	+0.2
5,550,803	+		PFR28_04857	0.89	-1.3
5,550,804	-		PFR28_04857	0.89	+0.3
5,550,804	-		PFR28_04857	0.89	+0.3
5,550,804	-		PFR28_04857	0.89	+0.2
5,550,804	-		PFR28_04857	0.89	-0.1
5,550,824	+				-1.0
5,550,824	+				-0.5
5,550,824	+				-1.7
5,550,824	+				-1.2
5,550,824	+				-0.7
5,550,825	-				-1.7
5,550,884	+				+2.1
5,550,887	+				-2.1
5,550,887	+				-1.2
5,550,887	+				+0.6
5,550,888	-				+1.6
5,550,888	-				+0.3
5,550,888	-				+0.2
5,550,888	-				-0.6
5,550,888	-				-1.1
5,550,888	-				+1.5
5,550,926	+				+0.9
5,550,941	+				+0.9
5,550,941	+				-2.4
5,550,942	-				+0.5
5,550,981	-				-1.4
5,551,159	+		PFR28_04858	0.18	+0.4
5,551,159	+		PFR28_04858	0.18	+0.7
5,551,160	-		PFR28_04858	0.18	+0.9
5,551,309	+		PFR28_04858	0.38	+1.9
5,551,309	+		PFR28_04858	0.38	-1.5
5,551,309	+		PFR28_04858	0.38	-2.0
5,551,309	+		PFR28_04858	0.38	+1.3
5,551,309	+		PFR28_04858	0.38	-0.4
5,551,309	+		PFR28_04858	0.38	-0.4
5,551,310	-		PFR28_04858	0.38	+0.7
5,551,310	-		PFR28_04858	0.38	+0.5
5,551,310	-		PFR28_04858	0.38	-1.7
5,551,310	-		PFR28_04858	0.38	-0.2
5,551,310	-		PFR28_04858	0.38	+1.4
5,551,660	+		PFR28_04858	0.85	-0.0
5,551,660	+		PFR28_04858	0.85	+1.6
5,551,661	-		PFR28_04858	0.85	-1.3
5,551,661	-		PFR28_04858	0.85	+0.6
5,551,785	+				+1.2
5,551,785	+				+1.6
5,551,785	+				-0.6
5,551,785	+				+0.9
5,551,785	+				+0.7
5,551,786	-				+0.1
5,551,786	-				+0.1
5,551,816	+				+0.5
5,551,817	-				+0.4
5,551,817	-				+0.0
5,551,918	-				-0.5
5,551,931	+				-1.1
5,551,931	+				+0.5
5,551,931	+				-0.5
5,551,931	+				+2.3
5,551,932	-				+0.1