Strain Fitness in Pseudomonas sp. RS175 around PFR28_02273

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
2,678,136	+		PFR28_02272	0.47	+1.1
2,678,136	+		PFR28_02272	0.47	-1.0
2,678,137	-		PFR28_02272	0.47	-0.3
2,678,137	-		PFR28_02272	0.47	+0.6
2,678,341	+		PFR28_02272	0.67	+0.0
2,678,342	-		PFR28_02272	0.67	+0.6
2,678,342	-		PFR28_02272	0.67	-1.4
2,678,350	-		PFR28_02272	0.68	-1.9
2,678,455	-		PFR28_02272	0.78	+1.2
2,678,455	-		PFR28_02272	0.78	+0.2
2,678,535	+		PFR28_02272	0.86	+0.7
2,678,536	-		PFR28_02272	0.86	+1.3
2,678,536	-		PFR28_02272	0.86	+0.5
2,678,536	-		PFR28_02272	0.86	+0.2
2,678,536	-		PFR28_02272	0.86	-0.2
2,678,706	+				-1.0
2,678,706	+				-2.7
2,678,706	+				-1.3
2,678,706	+				-2.2
2,678,707	-				+0.1
2,678,708	+				+0.3
2,678,709	-				-0.3
2,678,709	-				+2.6
2,678,709	-				+0.1
2,678,942	-				+4.6
2,678,942	-				-1.0
2,678,942	-				-0.5
2,679,146	+				-2.1
2,679,147	-				+1.2
2,679,149	+				+0.4
2,679,149	+				+0.4
2,679,150	-				-0.3
2,679,150	-				+0.3
2,679,365	+				+0.7
2,679,366	-				+1.0
2,679,455	+				-1.1
2,679,533	+				+0.6
2,679,534	-				+0.2
2,679,534	-				+2.8
2,679,534	-				+1.3
2,679,581	+				+1.4
2,679,581	+				-0.2
2,679,582	-				-1.3
2,679,582	-				+0.6
2,679,612	-				-0.6
2,679,773	+				+0.2
2,679,848	+				+0.9
2,679,848	+				+3.3
2,679,848	+				-0.1
2,679,849	-				+0.8
2,679,849	-				-0.0
2,679,849	-				+1.7
2,679,849	-				+0.4
2,680,163	-				-1.7
2,680,197	-				+1.0
2,680,232	+				-1.3
2,680,233	-				+0.2
2,680,685	+		PFR28_02273	0.10	+0.7
2,680,685	+		PFR28_02273	0.10	-0.9
2,680,686	-		PFR28_02273	0.10	+0.7
2,680,727	+		PFR28_02273	0.10	+0.3
2,680,727	+		PFR28_02273	0.10	+1.6
2,680,727	+		PFR28_02273	0.10	+0.8
2,680,728	-		PFR28_02273	0.10	-0.6
2,680,728	-		PFR28_02273	0.10	+0.3
2,680,728	-		PFR28_02273	0.10	-1.3
2,680,728	-		PFR28_02273	0.10	+1.9
2,680,728	-		PFR28_02273	0.10	+2.3
2,680,728	-		PFR28_02273	0.10	-0.2
2,680,728	-		PFR28_02273	0.10	+1.0
2,680,911	-		PFR28_02273	0.12	+1.7
2,680,911	-		PFR28_02273	0.12	+0.1
2,680,919	+		PFR28_02273	0.12	-1.9
2,680,919	+		PFR28_02273	0.12	-4.3
2,680,919	+		PFR28_02273	0.12	-0.4
2,680,919	+		PFR28_02273	0.12	+0.4
2,680,920	-		PFR28_02273	0.12	-1.0
2,680,920	-		PFR28_02273	0.12	+2.3
2,680,920	-		PFR28_02273	0.12	-0.2
2,680,920	-		PFR28_02273	0.12	+2.3
2,681,145	-		PFR28_02273	0.13	+0.6
2,681,176	+		PFR28_02273	0.13	-1.5
2,681,176	+		PFR28_02273	0.13	+0.5
2,681,176	+		PFR28_02273	0.13	-0.9
2,681,176	+		PFR28_02273	0.13	+1.5
2,681,177	-		PFR28_02273	0.13	+1.9
2,681,177	-		PFR28_02273	0.13	-0.5
2,681,177	-		PFR28_02273	0.13	+1.0
2,681,177	-		PFR28_02273	0.13	-1.4
2,681,177	-		PFR28_02273	0.13	-1.4
2,681,447	+		PFR28_02273	0.15	-1.0
2,681,447	+		PFR28_02273	0.15	-0.4
2,681,447	+		PFR28_02273	0.15	-1.6
2,681,447	+		PFR28_02273	0.15	-0.4
2,681,448	-		PFR28_02273	0.15	+2.3
2,681,448	-		PFR28_02273	0.15	+0.4
2,681,448	-		PFR28_02273	0.15	+0.2
2,681,448	-		PFR28_02273	0.15	-0.5
2,681,448	-		PFR28_02273	0.15	-0.4
2,681,503	+		PFR28_02273	0.15	+0.0
2,681,531	+		PFR28_02273	0.15	+2.3
2,681,606	+		PFR28_02273	0.16	+1.4
2,681,813	+		PFR28_02273	0.17	-0.7
2,681,813	+		PFR28_02273	0.17	+1.4
2,681,814	-		PFR28_02273	0.17	+0.1
2,681,814	-		PFR28_02273	0.17	+1.3
2,681,814	-		PFR28_02273	0.17	-0.0
2,681,814	-		PFR28_02273	0.17	-0.6
2,681,814	-		PFR28_02273	0.17	-1.5
2,681,814	-		PFR28_02273	0.17	-0.5
2,681,814	-		PFR28_02273	0.17	-0.3
2,681,814	-		PFR28_02273	0.17	+0.1
2,681,814	-		PFR28_02273	0.17	-1.7
2,681,879	+		PFR28_02273	0.18	-0.9
2,681,879	+		PFR28_02273	0.18	-0.2
2,683,739	+		PFR28_02273	0.29	+0.1
2,683,739	+		PFR28_02273	0.29	+0.5
2,683,740	-		PFR28_02273	0.29	-2.3
2,683,740	-		PFR28_02273	0.29	+0.4
2,683,886	+		PFR28_02273	0.30	-1.0
2,683,886	+		PFR28_02273	0.30	+1.3
2,683,887	-		PFR28_02273	0.30	-0.2
2,684,099	+		PFR28_02273	0.31	-0.4
2,684,099	+		PFR28_02273	0.31	+0.1
2,684,099	+		PFR28_02273	0.31	+0.8
2,684,100	-		PFR28_02273	0.31	-1.2
2,684,100	-		PFR28_02273	0.31	-1.8
2,684,100	-		PFR28_02273	0.31	+1.3
2,684,100	-		PFR28_02273	0.31	-0.2
2,684,100	-		PFR28_02273	0.31	+1.3
2,684,108	+		PFR28_02273	0.31	+2.3
2,684,108	+		PFR28_02273	0.31	+0.8
2,684,108	+		PFR28_02273	0.31	+0.7
2,684,108	+		PFR28_02273	0.31	-0.7
2,684,109	-		PFR28_02273	0.31	+0.1
2,684,109	-		PFR28_02273	0.31	+1.0
2,684,109	-		PFR28_02273	0.31	-2.2
2,684,109	-		PFR28_02273	0.31	+0.6
2,684,109	-		PFR28_02273	0.31	-1.4
2,684,109	-		PFR28_02273	0.31	-0.5
2,684,109	-		PFR28_02273	0.31	-2.0
2,684,109	-		PFR28_02273	0.31	-1.4
2,684,109	-		PFR28_02273	0.31	-0.9
2,684,123	-		PFR28_02273	0.32	-1.2
2,684,196	-		PFR28_02273	0.32	-1.2
2,684,357	+		PFR28_02273	0.33	-0.1
2,684,473	+		PFR28_02273	0.34	+0.9
2,684,525	+		PFR28_02273	0.34	+0.4
2,684,525	+		PFR28_02273	0.34	+2.3
2,684,525	+		PFR28_02273	0.34	+0.8
2,684,526	-		PFR28_02273	0.34	+0.5
2,684,526	-		PFR28_02273	0.34	-0.5
2,684,535	-		PFR28_02273	0.34	+0.8
2,684,720	+		PFR28_02273	0.35	+0.3
2,684,795	+		PFR28_02273	0.36	+1.9
2,684,795	+		PFR28_02273	0.36	+0.9
2,684,796	-		PFR28_02273	0.36	+0.9
2,684,796	-		PFR28_02273	0.36	-0.6
2,684,796	-		PFR28_02273	0.36	+0.3
2,685,002	+		PFR28_02273	0.37	+0.8
2,685,068	+		PFR28_02273	0.37	-0.3
2,685,068	+		PFR28_02273	0.37	-0.0
2,685,068	+		PFR28_02273	0.37	+0.4
2,685,068	+		PFR28_02273	0.37	+1.0
2,685,068	+		PFR28_02273	0.37	+0.2
2,685,069	-		PFR28_02273	0.37	-1.5
2,685,069	-		PFR28_02273	0.37	-1.3
2,685,069	-		PFR28_02273	0.37	-0.5
2,685,069	-		PFR28_02273	0.37	+0.1
2,685,352	-		PFR28_02273	0.39	+0.5
2,685,564	-		PFR28_02273	0.40	-0.7
2,685,564	-		PFR28_02273	0.40	+2.3
2,685,629	+		PFR28_02273	0.41	+0.5
2,685,629	+		PFR28_02273	0.41	+1.4
2,685,629	+		PFR28_02273	0.41	-0.9
2,685,629	+		PFR28_02273	0.41	-0.1
2,685,629	+		PFR28_02273	0.41	+0.7
2,685,630	-		PFR28_02273	0.41	-0.7
2,685,630	-		PFR28_02273	0.41	-0.4
2,685,630	-		PFR28_02273	0.41	+0.3
2,686,109	+		PFR28_02273	0.44	+0.2
2,686,110	-		PFR28_02273	0.44	-0.9
2,686,470	-		PFR28_02273	0.46	-0.5
2,686,578	-		PFR28_02273	0.47	+0.6
2,686,642	-		PFR28_02273	0.47	-1.5
2,686,642	-		PFR28_02273	0.47	-1.4
2,686,642	-		PFR28_02273	0.47	+0.2
2,686,642	-		PFR28_02273	0.47	+1.7
2,686,666	+		PFR28_02273	0.47	-1.4
2,686,674	-		PFR28_02273	0.47	-1.0
2,686,674	-		PFR28_02273	0.47	+1.3
2,687,370	-		PFR28_02273	0.52	+0.4
2,687,370	-		PFR28_02273	0.52	-0.3
2,687,370	-		PFR28_02273	0.52	-0.2
2,687,370	-		PFR28_02273	0.52	-1.0
2,687,370	-		PFR28_02273	0.52	-1.3
2,687,786	+		PFR28_02273	0.54	-1.0
2,687,786	+		PFR28_02273	0.54	+1.1
2,687,795	+		PFR28_02273	0.54	+0.5
2,687,795	+		PFR28_02273	0.54	+0.6
2,687,795	+		PFR28_02273	0.54	+0.2
2,687,795	+		PFR28_02273	0.54	-0.2
2,687,795	+		PFR28_02273	0.54	+0.1
2,687,795	+		PFR28_02273	0.54	+0.4
2,688,239	+		PFR28_02273	0.57	-0.4
2,688,239	+		PFR28_02273	0.57	-0.6
2,688,239	+		PFR28_02273	0.57	+0.2
2,688,240	-		PFR28_02273	0.57	-0.9
2,688,240	-		PFR28_02273	0.57	-0.3
2,688,271	-		PFR28_02273	0.57	-0.0
2,690,171	+		PFR28_02273	0.69	+3.3
2,690,318	+		PFR28_02273	0.70	-1.1
2,690,318	+		PFR28_02273	0.70	+2.9
2,690,318	+		PFR28_02273	0.70	+0.2
2,690,319	-		PFR28_02273	0.70	-1.8
2,690,319	-		PFR28_02273	0.70	+0.9
2,690,319	-		PFR28_02273	0.70	+2.3
2,690,339	+		PFR28_02273	0.70	-1.2
2,690,362	+		PFR28_02273	0.70	-0.7
2,690,362	+		PFR28_02273	0.70	+3.0
2,690,362	+		PFR28_02273	0.70	+2.9
2,690,363	-		PFR28_02273	0.70	-2.2
2,690,363	-		PFR28_02273	0.70	-0.4
2,690,394	+		PFR28_02273	0.70	+3.3
2,690,526	-		PFR28_02273	0.71	-0.0
2,690,534	+		PFR28_02273	0.71	+1.3
2,690,534	+		PFR28_02273	0.71	+1.0
2,690,534	+		PFR28_02273	0.71	-0.8
2,690,535	-		PFR28_02273	0.71	-0.7
2,690,535	-		PFR28_02273	0.71	+0.8
2,690,610	-		PFR28_02273	0.72	+0.1
2,690,610	-		PFR28_02273	0.72	+0.4
2,690,663	+		PFR28_02273	0.72	+0.7
2,690,663	+		PFR28_02273	0.72	+0.7
2,690,663	+		PFR28_02273	0.72	-1.6
2,690,664	-		PFR28_02273	0.72	+0.9
2,690,664	-		PFR28_02273	0.72	+2.3
2,690,664	-		PFR28_02273	0.72	+0.7
2,690,783	-		PFR28_02273	0.73	+3.3
2,690,945	+		PFR28_02273	0.74	+2.1
2,690,945	+		PFR28_02273	0.74	+0.3
2,690,945	+		PFR28_02273	0.74	+1.5
2,690,946	-		PFR28_02273	0.74	+1.3
2,690,946	-		PFR28_02273	0.74	+0.1
2,690,970	+		PFR28_02273	0.74	-0.0
2,690,971	-		PFR28_02273	0.74	-0.4
2,690,971	-		PFR28_02273	0.74	-0.2
2,690,981	+		PFR28_02273	0.74	-1.3
2,690,981	+		PFR28_02273	0.74	+1.7
2,690,982	-		PFR28_02273	0.74	-2.5
2,691,143	+		PFR28_02273	0.75	+0.1
2,691,144	-		PFR28_02273	0.75	+0.1
2,691,219	-		PFR28_02273	0.75	-0.0
2,691,267	-		PFR28_02273	0.76	+0.1
2,691,416	+		PFR28_02273	0.77	-0.1
2,691,416	+		PFR28_02273	0.77	-1.3
2,691,417	-		PFR28_02273	0.77	-0.3
2,691,417	-		PFR28_02273	0.77	-2.0
2,691,506	-		PFR28_02273	0.77	-1.6
2,691,978	-		PFR28_02273	0.80	-0.7
2,692,043	+		PFR28_02273	0.81	-1.8
2,692,044	-		PFR28_02273	0.81	-0.0
2,692,142	-		PFR28_02273	0.81	-2.0
2,692,185	+		PFR28_02273	0.81	-0.6
2,692,469	+		PFR28_02273	0.83	-2.4
2,692,523	+		PFR28_02273	0.84	+0.4
2,692,523	+		PFR28_02273	0.84	+0.4
2,692,523	+		PFR28_02273	0.84	+0.1
2,692,523	+		PFR28_02273	0.84	-1.0
2,692,523	+		PFR28_02273	0.84	+0.3
2,692,524	-		PFR28_02273	0.84	+1.1
2,692,524	-		PFR28_02273	0.84	+1.1
2,692,524	-		PFR28_02273	0.84	+3.3
2,692,524	-		PFR28_02273	0.84	-1.2
2,692,524	-		PFR28_02273	0.84	-0.5
2,692,991	+		PFR28_02273	0.86	+0.0
2,693,038	+		PFR28_02273	0.87	+0.6
2,693,067	-		PFR28_02273	0.87	+0.5
2,693,149	+		PFR28_02273	0.87	+1.5
2,693,150	-		PFR28_02273	0.87	+0.2
2,693,201	+		PFR28_02273	0.88	+1.4
2,693,202	-		PFR28_02273	0.88	-0.2
2,693,202	-		PFR28_02273	0.88	+1.7
2,693,202	-		PFR28_02273	0.88	+0.1
2,693,202	-		PFR28_02273	0.88	-1.0
2,693,294	+		PFR28_02273	0.88	-0.7
2,693,391	-		PFR28_02273	0.89	-0.5
2,693,538	-		PFR28_02273	0.90	+1.1
2,693,611	-				+1.6
2,693,756	+				-0.5
2,693,756	+				+0.3
2,693,757	-				-0.4
2,693,766	-				+0.3
2,693,766	-				-0.1
2,693,766	-				-0.5
2,693,766	-				-0.6
2,693,852	+				+1.7
2,693,853	-				+1.1
2,694,061	-				+0.7
2,694,061	-				-0.0
2,694,182	+				-0.1
2,694,182	+				+0.3
2,694,225	+				+1.1
2,694,225	+				+1.3
2,694,226	-				+1.6
2,694,226	-				+1.3
2,694,226	-				+0.7
2,694,226	-				-0.4
2,694,293	+				+2.3
2,694,293	+				-0.8
2,694,293	+				-0.7
2,694,294	-				-0.4
2,694,347	+				-1.0
2,694,347	+				-0.0
2,694,347	+				-0.4
2,694,347	+				+0.5
2,694,347	+				+1.3
2,694,347	+				+1.0
2,694,347	+				+0.5
2,694,347	+				-1.2
2,694,347	+				-0.7
2,694,347	+				+0.5
2,694,347	+				-0.9
2,694,348	-				-0.0
2,694,348	-				+0.4
2,694,348	-				+0.5
2,694,348	-				-0.5
2,694,452	+				-0.0
2,694,453	-				-0.2
2,694,453	-				+0.3
2,694,650	+				-1.5
2,694,731	+				+0.3
2,694,731	+				-0.3
2,694,731	+				+1.6
2,694,731	+				+2.7
2,694,731	+				+1.2
2,694,731	+				+0.9
2,694,731	+				-0.0
2,694,732	-				+0.4
2,694,732	-				-1.8
2,694,732	-				+0.8
2,694,732	-				-0.0
2,694,732	-				-0.5
2,695,193	-				-0.8
2,695,198	+				-0.9
2,695,199	-				+1.3
2,695,389	+				-1.9
2,695,389	+				+0.1
2,695,389	+				+1.3
2,695,775	+				-0.7
2,695,775	+				+0.3
2,695,775	+				-1.2
2,695,776	-				+1.2
2,695,829	+				+1.6
2,695,830	-				-0.0
2,695,839	-				+0.1
2,695,973	+				-1.3
2,695,974	-				-1.4
2,695,974	-				+2.3