Strain Fitness in Pseudomonas sp. RS175 around PFR28_01813

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
2,031,525	+				-0.2
2,031,525	+				-0.2
2,031,526	-				-0.2
2,031,814	+		PFR28_01812	0.39	-0.2
2,031,814	+		PFR28_01812	0.39	-2.4
2,031,815	-		PFR28_01812	0.39	+0.3
2,031,960	+		PFR28_01812	0.62	-1.0
2,031,960	+		PFR28_01812	0.62	-1.9
2,031,960	+		PFR28_01812	0.62	-0.3
2,031,960	+		PFR28_01812	0.62	-0.0
2,031,960	+		PFR28_01812	0.62	-2.0
2,031,961	-		PFR28_01812	0.62	-1.5
2,031,961	-		PFR28_01812	0.62	-0.6
2,031,961	-		PFR28_01812	0.62	+0.2
2,031,961	-		PFR28_01812	0.62	+1.5
2,031,961	-		PFR28_01812	0.62	-0.6
2,031,961	-		PFR28_01812	0.62	-0.5
2,032,163	+				-0.3
2,032,163	+				+0.4
2,032,163	+				-2.9
2,032,164	-				-1.4
2,032,164	-				-0.7
2,032,164	-				+1.2
2,032,164	-				-1.3
2,032,164	-				-2.3
2,032,185	+				-1.9
2,032,185	+				-0.4
2,032,186	-				-2.7
2,032,186	-				-0.5
2,032,186	-				-0.5
2,032,186	-				-1.1
2,032,186	-				+1.6
2,032,186	-				-0.3
2,032,198	+				+0.9
2,032,198	+				-1.0
2,032,199	-				-1.6
2,032,199	-				-0.1
2,032,199	-				-0.4
2,032,241	-				-0.5
2,032,271	+				+0.4
2,032,272	-				-0.9
2,032,326	+				+0.9
2,032,326	+				-0.4
2,032,326	+				+1.7
2,032,326	+				-0.9
2,032,326	+				-1.8
2,032,326	+				-1.2
2,032,326	+				+1.6
2,032,326	+				+1.3
2,032,326	+				+0.9
2,032,326	+				+0.8
2,032,327	-				+1.2
2,032,327	-				-0.4
2,032,327	-				+3.0
2,032,327	-				-0.1
2,032,327	-				-0.2
2,032,328	+				-0.4
2,032,329	-				+0.0
2,032,478	-				+0.8
2,032,498	+				+0.2
2,032,498	+				+1.2
2,032,498	+				+0.6
2,032,498	+				-1.7
2,032,498	+				+0.9
2,032,498	+				-0.5
2,032,499	-				-0.6
2,032,499	-				-0.9
2,032,744	+		PFR28_01813	0.21	+0.6
2,032,744	+		PFR28_01813	0.21	-1.2
2,032,744	+		PFR28_01813	0.21	-1.1
2,032,744	+		PFR28_01813	0.21	+1.2
2,032,744	+		PFR28_01813	0.21	+0.5
2,032,744	+		PFR28_01813	0.21	-0.5
2,032,744	+		PFR28_01813	0.21	-0.2
2,032,744	+		PFR28_01813	0.21	-1.3
2,032,744	+		PFR28_01813	0.21	+0.1
2,032,745	-		PFR28_01813	0.21	-0.2
2,032,745	-		PFR28_01813	0.21	+1.0
2,032,778	-		PFR28_01813	0.23	-0.4
2,032,795	+		PFR28_01813	0.23	-1.9
2,032,796	-		PFR28_01813	0.23	-1.1
2,032,796	-		PFR28_01813	0.23	+2.2
2,032,796	-		PFR28_01813	0.23	-2.3
2,032,817	-		PFR28_01813	0.25	-0.2
2,032,846	+		PFR28_01813	0.26	-2.3
2,032,846	+		PFR28_01813	0.26	-2.2
2,032,847	-		PFR28_01813	0.26	-1.0
2,032,847	-		PFR28_01813	0.26	-0.2
2,032,847	-		PFR28_01813	0.26	-1.2
2,032,847	-		PFR28_01813	0.26	-2.2
2,032,847	-		PFR28_01813	0.26	-1.0
2,033,080	+		PFR28_01813	0.39	-0.8
2,033,081	-		PFR28_01813	0.39	-0.2
2,033,081	-		PFR28_01813	0.39	+0.9
2,033,143	+		PFR28_01813	0.42	-0.6
2,033,206	+		PFR28_01813	0.45	-0.5
2,033,260	+		PFR28_01813	0.48	-1.4
2,033,671	+		PFR28_01813	0.70	+1.0
2,033,672	-		PFR28_01813	0.70	+0.1
2,033,764	+		PFR28_01813	0.75	-0.2
2,033,765	-		PFR28_01813	0.75	+0.2
2,033,779	+		PFR28_01813	0.76	+0.8
2,033,779	+		PFR28_01813	0.76	-0.4
2,033,779	+		PFR28_01813	0.76	-0.1
2,033,779	+		PFR28_01813	0.76	+1.2
2,033,780	-		PFR28_01813	0.76	-0.5
2,033,780	-		PFR28_01813	0.76	-0.6
2,033,780	-		PFR28_01813	0.76	+0.4
2,033,780	-		PFR28_01813	0.76	-1.0
2,033,845	+		PFR28_01813	0.79	-0.3
2,033,845	+		PFR28_01813	0.79	+0.9
2,033,846	-		PFR28_01813	0.79	+0.9
2,033,846	-		PFR28_01813	0.79	+0.8
2,033,897	-		PFR28_01813	0.82	+1.6
2,033,911	+		PFR28_01813	0.83	-0.6
2,033,911	+		PFR28_01813	0.83	-0.5
2,033,911	+		PFR28_01813	0.83	-0.5
2,033,911	+		PFR28_01813	0.83	-1.2
2,033,912	-		PFR28_01813	0.83	-0.8
2,033,977	+		PFR28_01813	0.86	-0.4
2,033,978	-		PFR28_01813	0.87	-0.8
2,033,978	-		PFR28_01813	0.87	-0.3
2,034,065	-				-0.3
2,034,222	+				+1.6
2,034,222	+				+0.4
2,034,223	-				-0.7
2,034,223	-				+0.4
2,034,223	-				-1.5
2,034,223	-				-2.4
2,034,223	-				-0.1
2,034,264	+				+0.5
2,034,265	-				-0.1
2,034,265	-				+0.1
2,034,379	+				-0.7
2,034,380	-				+0.1
2,034,426	+				+0.2
2,034,426	+				-1.4
2,034,427	-				-0.6
2,034,427	-				+0.6
2,034,427	-				+4.2
2,034,479	-				-1.2
2,034,479	-				+0.4
2,034,479	-				-1.7
2,034,568	+		PFR28_01814	0.18	-1.2
2,034,568	+		PFR28_01814	0.18	-0.9
2,034,568	+		PFR28_01814	0.18	+1.6
2,034,568	+		PFR28_01814	0.18	-0.8
2,034,569	-		PFR28_01814	0.19	-2.0
2,034,569	-		PFR28_01814	0.19	-1.5
2,034,569	-		PFR28_01814	0.19	-2.0
2,034,711	+		PFR28_01814	0.49	-0.1
2,034,711	+		PFR28_01814	0.49	-1.4
2,034,711	+		PFR28_01814	0.49	+1.3
2,034,712	-		PFR28_01814	0.50	-0.8
2,034,712	-		PFR28_01814	0.50	-1.1
2,034,858	+		PFR28_01814	0.81	+0.2
2,034,858	+		PFR28_01814	0.81	-0.3
2,034,859	-		PFR28_01814	0.81	-0.3
2,034,859	-		PFR28_01814	0.81	-1.3
2,034,859	-		PFR28_01814	0.81	-1.4
2,034,880	-		PFR28_01814	0.86	-0.1
2,034,880	-		PFR28_01814	0.86	-0.1
2,034,915	+				-0.6
2,034,915	+				-1.0
2,034,916	-				-0.4
2,034,977	+				-0.8
2,034,977	+				-1.2
2,034,977	+				-0.1
2,034,977	+				+1.9
2,034,977	+				-0.6
2,034,978	-				-1.3
2,035,065	-		PFR28_01815	0.13	+0.8
2,035,082	+		PFR28_01815	0.15	-1.6
2,035,082	+		PFR28_01815	0.15	-2.8
2,035,217	+		PFR28_01815	0.30	-2.7
2,035,218	-		PFR28_01815	0.31	-1.8
2,035,218	-		PFR28_01815	0.31	-2.1
2,035,218	-		PFR28_01815	0.31	+0.4
2,035,218	-		PFR28_01815	0.31	-1.4