Strain Fitness in Pseudomonas sp. RS175 around PFR28_00181

Experiment: Vanillic Acid (C) 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_00179 and PFR28_00180 overlap by 1 nucleotidesPFR28_00180 and PFR28_00181 overlap by 1 nucleotidesPFR28_00181 and PFR28_00182 are separated by 10 nucleotidesPFR28_00182 and PFR28_00183 overlap by 4 nucleotides PFR28_00179: PFR28_00179 - Intermembrane phospholipid transport system ATP-binding protein MlaF, at 203,330 to 204,139 _00179 PFR28_00180: PFR28_00180 - Intermembrane phospholipid transport system permease protein MlaE, at 204,139 to 204,936 _00180 PFR28_00181: PFR28_00181 - Intermembrane phospholipid transport system binding protein MlaD, at 204,936 to 205,403 _00181 PFR28_00182: PFR28_00182 - Intermembrane phospholipid transport system binding protein MlaC, at 205,414 to 206,067 _00182 PFR28_00183: PFR28_00183 - hypothetical protein, at 206,064 to 206,381 _00183 Position (kb) 204 205 206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 203.969 kb on + strand, within PFR28_00179at 203.969 kb on + strand, within PFR28_00179at 203.969 kb on + strand, within PFR28_00179at 203.969 kb on + strand, within PFR28_00179at 203.969 kb on + strand, within PFR28_00179at 203.970 kb on - strand, within PFR28_00179at 203.970 kb on - strand, within PFR28_00179at 203.970 kb on - strand, within PFR28_00179at 203.970 kb on - strand, within PFR28_00179at 203.970 kb on - strand, within PFR28_00179at 203.975 kb on + strand, within PFR28_00179at 203.975 kb on + strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 203.976 kb on - strand, within PFR28_00179at 204.111 kb on - strandat 204.159 kb on - strandat 204.198 kb on - strandat 204.198 kb on - strandat 204.392 kb on - strand, within PFR28_00180at 204.392 kb on - strand, within PFR28_00180at 204.392 kb on - strand, within PFR28_00180at 204.392 kb on - strand, within PFR28_00180at 204.392 kb on - strand, within PFR28_00180at 204.392 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.575 kb on - strand, within PFR28_00180at 204.580 kb on - strand, within PFR28_00180at 204.692 kb on - strand, within PFR28_00180at 204.692 kb on - strand, within PFR28_00180at 204.692 kb on - strand, within PFR28_00180at 204.692 kb on - strand, within PFR28_00180at 204.815 kb on - strand, within PFR28_00180at 204.815 kb on - strand, within PFR28_00180at 204.815 kb on - strand, within PFR28_00180at 204.872 kb on - strandat 204.872 kb on - strandat 204.904 kb on - strandat 205.050 kb on - strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.053 kb on + strand, within PFR28_00181at 205.054 kb on - strand, within PFR28_00181at 205.054 kb on - strand, within PFR28_00181at 205.054 kb on - strand, within PFR28_00181at 205.054 kb on - strand, within PFR28_00181at 205.054 kb on - strand, within PFR28_00181at 205.054 kb on - strand, within PFR28_00181at 205.062 kb on + strand, within PFR28_00181at 205.062 kb on + strand, within PFR28_00181at 205.062 kb on + strand, within PFR28_00181at 205.062 kb on + strand, within PFR28_00181at 205.062 kb on + strand, within PFR28_00181at 205.062 kb on + strand, within PFR28_00181at 205.063 kb on - strand, within PFR28_00181at 205.063 kb on - strand, within PFR28_00181at 205.063 kb on - strand, within PFR28_00181at 205.063 kb on - strand, within PFR28_00181at 205.063 kb on - strand, within PFR28_00181at 205.068 kb on + strand, within PFR28_00181at 205.068 kb on + strand, within PFR28_00181at 205.068 kb on + strand, within PFR28_00181at 205.068 kb on + strand, within PFR28_00181at 205.068 kb on + strand, within PFR28_00181at 205.068 kb on + strand, within PFR28_00181at 205.069 kb on - strand, within PFR28_00181at 205.069 kb on - strand, within PFR28_00181at 205.069 kb on - strand, within PFR28_00181at 205.069 kb on - strand, within PFR28_00181at 205.080 kb on - strand, within PFR28_00181at 205.266 kb on + strand, within PFR28_00181at 205.266 kb on + strand, within PFR28_00181at 205.266 kb on + strand, within PFR28_00181at 205.266 kb on + strand, within PFR28_00181at 205.266 kb on + strand, within PFR28_00181at 205.266 kb on + strand, within PFR28_00181at 205.266 kb on + strand, within PFR28_00181at 205.267 kb on - strand, within PFR28_00181at 205.267 kb on - strand, within PFR28_00181at 205.267 kb on - strand, within PFR28_00181at 205.401 kb on + strandat 205.402 kb on - strandat 205.561 kb on + strand, within PFR28_00182at 205.562 kb on - strand, within PFR28_00182at 205.562 kb on - strand, within PFR28_00182at 205.562 kb on - strand, within PFR28_00182at 205.585 kb on + strand, within PFR28_00182at 205.585 kb on + strand, within PFR28_00182at 205.586 kb on - strand, within PFR28_00182at 205.586 kb on - strand, within PFR28_00182at 205.632 kb on + strand, within PFR28_00182at 205.632 kb on + strand, within PFR28_00182at 205.660 kb on + strand, within PFR28_00182at 205.660 kb on + strand, within PFR28_00182at 205.661 kb on - strand, within PFR28_00182at 205.661 kb on - strand, within PFR28_00182at 205.732 kb on + strand, within PFR28_00182at 205.732 kb on + strand, within PFR28_00182at 205.733 kb on - strand, within PFR28_00182at 205.733 kb on - strand, within PFR28_00182at 205.753 kb on + strand, within PFR28_00182at 205.753 kb on + strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.807 kb on - strand, within PFR28_00182at 205.861 kb on + strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.864 kb on - strand, within PFR28_00182at 205.864 kb on - strand, within PFR28_00182at 205.864 kb on - strand, within PFR28_00182at 205.899 kb on + strand, within PFR28_00182at 206.371 kb on + strandat 206.371 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vanillic Acid (C) 2.5 mM
remove
203,969 + PFR28_00179 0.79 -0.8
203,969 + PFR28_00179 0.79 -0.6
203,969 + PFR28_00179 0.79 -0.4
203,969 + PFR28_00179 0.79 -0.8
203,969 + PFR28_00179 0.79 +0.4
203,970 - PFR28_00179 0.79 -0.3
203,970 - PFR28_00179 0.79 +1.2
203,970 - PFR28_00179 0.79 -1.8
203,970 - PFR28_00179 0.79 -1.0
203,970 - PFR28_00179 0.79 -0.4
203,975 + PFR28_00179 0.80 -0.7
203,975 + PFR28_00179 0.80 -1.5
203,976 - PFR28_00179 0.80 -1.1
203,976 - PFR28_00179 0.80 -1.2
203,976 - PFR28_00179 0.80 -4.1
203,976 - PFR28_00179 0.80 +1.7
203,976 - PFR28_00179 0.80 -1.0
203,976 - PFR28_00179 0.80 -1.7
203,976 - PFR28_00179 0.80 -1.5
203,976 - PFR28_00179 0.80 -0.4
203,976 - PFR28_00179 0.80 -0.3
203,976 - PFR28_00179 0.80 -1.5
203,976 - PFR28_00179 0.80 +0.2
203,976 - PFR28_00179 0.80 -3.7
203,976 - PFR28_00179 0.80 -1.2
204,111 - -1.3
204,159 - -2.4
204,198 - -1.1
204,198 - -2.4
204,392 - PFR28_00180 0.32 -2.2
204,392 - PFR28_00180 0.32 -0.6
204,392 - PFR28_00180 0.32 -1.6
204,392 - PFR28_00180 0.32 -0.4
204,392 - PFR28_00180 0.32 -2.4
204,392 - PFR28_00180 0.32 -1.8
204,575 - PFR28_00180 0.55 -2.2
204,575 - PFR28_00180 0.55 +0.2
204,575 - PFR28_00180 0.55 +2.7
204,575 - PFR28_00180 0.55 -2.2
204,575 - PFR28_00180 0.55 -2.4
204,575 - PFR28_00180 0.55 -1.7
204,575 - PFR28_00180 0.55 -1.0
204,575 - PFR28_00180 0.55 -2.4
204,575 - PFR28_00180 0.55 -1.8
204,580 - PFR28_00180 0.55 -2.1
204,692 - PFR28_00180 0.69 -0.7
204,692 - PFR28_00180 0.69 -2.3
204,692 - PFR28_00180 0.69 -1.7
204,692 - PFR28_00180 0.69 +1.0
204,815 - PFR28_00180 0.85 +0.2
204,815 - PFR28_00180 0.85 -0.4
204,815 - PFR28_00180 0.85 -1.4
204,872 - -0.3
204,872 - -0.4
204,904 - -0.6
205,050 - PFR28_00181 0.24 +0.1
205,053 + PFR28_00181 0.25 -0.3
205,053 + PFR28_00181 0.25 -2.3
205,053 + PFR28_00181 0.25 -1.1
205,053 + PFR28_00181 0.25 -1.8
205,053 + PFR28_00181 0.25 +0.1
205,053 + PFR28_00181 0.25 +0.1
205,053 + PFR28_00181 0.25 +0.7
205,053 + PFR28_00181 0.25 -1.4
205,054 - PFR28_00181 0.25 -2.0
205,054 - PFR28_00181 0.25 +1.7
205,054 - PFR28_00181 0.25 -0.8
205,054 - PFR28_00181 0.25 +2.7
205,054 - PFR28_00181 0.25 -3.8
205,054 - PFR28_00181 0.25 -1.5
205,062 + PFR28_00181 0.27 -1.8
205,062 + PFR28_00181 0.27 -1.8
205,062 + PFR28_00181 0.27 -1.5
205,062 + PFR28_00181 0.27 -2.2
205,062 + PFR28_00181 0.27 -1.3
205,062 + PFR28_00181 0.27 -1.3
205,063 - PFR28_00181 0.27 -1.4
205,063 - PFR28_00181 0.27 -2.5
205,063 - PFR28_00181 0.27 -1.4
205,063 - PFR28_00181 0.27 -0.7
205,063 - PFR28_00181 0.27 +0.7
205,068 + PFR28_00181 0.28 -0.6
205,068 + PFR28_00181 0.28 +0.7
205,068 + PFR28_00181 0.28 -1.3
205,068 + PFR28_00181 0.28 -1.2
205,068 + PFR28_00181 0.28 +1.1
205,068 + PFR28_00181 0.28 +0.7
205,069 - PFR28_00181 0.28 -0.8
205,069 - PFR28_00181 0.28 -0.7
205,069 - PFR28_00181 0.28 -1.0
205,069 - PFR28_00181 0.28 +0.1
205,080 - PFR28_00181 0.31 +1.7
205,266 + PFR28_00181 0.71 -1.4
205,266 + PFR28_00181 0.71 -0.3
205,266 + PFR28_00181 0.71 -1.0
205,266 + PFR28_00181 0.71 -1.7
205,266 + PFR28_00181 0.71 -0.9
205,266 + PFR28_00181 0.71 -0.1
205,266 + PFR28_00181 0.71 -2.3
205,267 - PFR28_00181 0.71 -1.5
205,267 - PFR28_00181 0.71 -0.4
205,267 - PFR28_00181 0.71 -0.1
205,401 + +0.8
205,402 - -1.2
205,561 + PFR28_00182 0.22 -0.3
205,562 - PFR28_00182 0.23 -0.1
205,562 - PFR28_00182 0.23 -2.5
205,562 - PFR28_00182 0.23 +1.7
205,585 + PFR28_00182 0.26 -1.5
205,585 + PFR28_00182 0.26 -2.0
205,586 - PFR28_00182 0.26 -1.3
205,586 - PFR28_00182 0.26 -3.4
205,632 + PFR28_00182 0.33 -1.8
205,632 + PFR28_00182 0.33 -0.5
205,660 + PFR28_00182 0.38 +0.7
205,660 + PFR28_00182 0.38 -1.4
205,661 - PFR28_00182 0.38 +0.7
205,661 - PFR28_00182 0.38 -1.4
205,732 + PFR28_00182 0.49 -1.3
205,732 + PFR28_00182 0.49 -2.1
205,733 - PFR28_00182 0.49 -1.3
205,733 - PFR28_00182 0.49 -0.7
205,753 + PFR28_00182 0.52 +0.4
205,753 + PFR28_00182 0.52 +0.4
205,754 - PFR28_00182 0.52 +0.1
205,754 - PFR28_00182 0.52 -0.8
205,754 - PFR28_00182 0.52 -2.1
205,754 - PFR28_00182 0.52 +0.4
205,754 - PFR28_00182 0.52 -1.3
205,754 - PFR28_00182 0.52 +0.4
205,807 - PFR28_00182 0.60 -1.1
205,861 + PFR28_00182 0.68 +0.2
205,862 - PFR28_00182 0.69 +0.4
205,862 - PFR28_00182 0.69 -1.4
205,862 - PFR28_00182 0.69 -1.0
205,862 - PFR28_00182 0.69 -2.5
205,862 - PFR28_00182 0.69 -0.6
205,863 + PFR28_00182 0.69 +0.9
205,863 + PFR28_00182 0.69 -0.0
205,863 + PFR28_00182 0.69 -2.2
205,863 + PFR28_00182 0.69 -1.4
205,863 + PFR28_00182 0.69 -0.1
205,864 - PFR28_00182 0.69 -1.7
205,864 - PFR28_00182 0.69 +0.2
205,864 - PFR28_00182 0.69 -1.1
205,899 + PFR28_00182 0.74 -2.2
206,371 + -0.3
206,371 + -1.2

Or see this region's nucleotide sequence