Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0705 and Echvi_0706 are separated by 99 nucleotides Echvi_0706 and Echvi_0707 are separated by 102 nucleotides Echvi_0707 and Echvi_0708 are separated by 5 nucleotides Echvi_0708 and Echvi_0709 are separated by 76 nucleotides
Echvi_0705: Echvi_0705 - hypothetical protein, at 797,254 to 797,748
_0705
Echvi_0706: Echvi_0706 - hypothetical protein, at 797,848 to 797,946
_0706
Echvi_0707: Echvi_0707 - Uncharacterized protein conserved in bacteria, at 798,049 to 798,519
_0707
Echvi_0708: Echvi_0708 - transcription termination factor NusA, at 798,525 to 799,772
_0708
Echvi_0709: Echvi_0709 - translation initiation factor IF-2, at 799,849 to 802,848
_0709
Position (kb) 798
799
800 Strain fitness (log2 ratio) -1
0
1
2 at 797.564 kb on + strand, within Echvi_0705 at 797.570 kb on + strand, within Echvi_0705 at 797.570 kb on + strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.594 kb on + strand, within Echvi_0705 at 797.594 kb on + strand, within Echvi_0705 at 797.595 kb on - strand, within Echvi_0705 at 797.608 kb on + strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.708 kb on - strand at 797.717 kb on + strand at 797.723 kb on + strand at 797.723 kb on + strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.747 kb on - strand at 797.823 kb on - strand at 797.946 kb on + strand at 797.950 kb on + strand at 797.993 kb on + strand at 798.035 kb on + strand at 798.035 kb on + strand at 798.039 kb on + strand at 798.039 kb on + strand at 798.204 kb on + strand, within Echvi_0707 at 798.262 kb on + strand, within Echvi_0707 at 799.810 kb on + strand at 799.812 kb on + strand at 799.812 kb on + strand at 799.812 kb on + strand at 799.812 kb on + strand at 799.816 kb on + strand at 799.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 797,564 + Echvi_0705 0.63 +0.2 797,570 + Echvi_0705 0.64 -1.7 797,570 + Echvi_0705 0.64 -0.0 797,571 - Echvi_0705 0.64 +0.7 797,571 - Echvi_0705 0.64 -0.3 797,571 - Echvi_0705 0.64 +0.4 797,594 + Echvi_0705 0.69 +0.7 797,594 + Echvi_0705 0.69 -0.3 797,595 - Echvi_0705 0.69 -0.9 797,608 + Echvi_0705 0.72 +0.0 797,658 - Echvi_0705 0.82 -0.4 797,658 - Echvi_0705 0.82 +0.4 797,658 - Echvi_0705 0.82 -1.3 797,708 - -0.2 797,717 + -0.0 797,723 + +0.7 797,723 + -0.4 797,724 - -0.9 797,724 - -0.3 797,724 - -0.1 797,724 - -0.6 797,724 - +0.1 797,747 - +2.5 797,823 - +0.0 797,946 + -1.3 797,950 + -0.3 797,993 + -1.0 798,035 + -0.2 798,035 + -0.6 798,039 + +1.2 798,039 + -1.1 798,204 + Echvi_0707 0.33 +0.8 798,262 + Echvi_0707 0.45 +0.3 799,810 + +1.9 799,812 + +0.4 799,812 + -0.2 799,812 + +1.2 799,812 + +1.7 799,816 + +0.6 799,816 + +1.2
Or see this region's nucleotide sequence