Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2312

Experiment: m.b. Cholin acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2311 and B158DRAFT_2312 are separated by 114 nucleotidesB158DRAFT_2312 and B158DRAFT_2313 are separated by 15 nucleotides B158DRAFT_2311: B158DRAFT_2311 - ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-), at 471,340 to 472,143 _2311 B158DRAFT_2312: B158DRAFT_2312 - polyphosphate kinase 1, at 472,258 to 474,393 _2312 B158DRAFT_2313: B158DRAFT_2313 - Exopolyphosphatase, at 474,409 to 475,956 _2313 Position (kb) 472 473 474 475Strain fitness (log2 ratio) -2 -1 0 1 2at 471.294 kb on - strandat 471.344 kb on - strandat 471.384 kb on - strandat 471.384 kb on - strandat 471.384 kb on - strandat 471.384 kb on - strandat 471.390 kb on - strandat 471.537 kb on + strand, within B158DRAFT_2311at 471.549 kb on + strand, within B158DRAFT_2311at 471.549 kb on + strand, within B158DRAFT_2311at 471.697 kb on + strand, within B158DRAFT_2311at 471.809 kb on - strand, within B158DRAFT_2311at 471.860 kb on - strand, within B158DRAFT_2311at 471.904 kb on + strand, within B158DRAFT_2311at 471.904 kb on + strand, within B158DRAFT_2311at 471.904 kb on + strand, within B158DRAFT_2311at 471.904 kb on + strand, within B158DRAFT_2311at 471.911 kb on + strand, within B158DRAFT_2311at 471.912 kb on - strand, within B158DRAFT_2311at 471.912 kb on - strand, within B158DRAFT_2311at 471.912 kb on - strand, within B158DRAFT_2311at 471.912 kb on - strand, within B158DRAFT_2311at 471.912 kb on - strand, within B158DRAFT_2311at 471.952 kb on - strand, within B158DRAFT_2311at 472.027 kb on - strand, within B158DRAFT_2311at 472.255 kb on + strandat 472.304 kb on + strandat 472.304 kb on + strandat 472.312 kb on - strandat 472.312 kb on - strandat 472.312 kb on - strandat 472.317 kb on - strandat 472.318 kb on + strandat 472.550 kb on + strand, within B158DRAFT_2312at 472.558 kb on + strand, within B158DRAFT_2312at 472.563 kb on - strand, within B158DRAFT_2312at 472.601 kb on - strand, within B158DRAFT_2312at 472.632 kb on - strand, within B158DRAFT_2312at 472.749 kb on + strand, within B158DRAFT_2312at 472.756 kb on + strand, within B158DRAFT_2312at 472.764 kb on - strand, within B158DRAFT_2312at 472.775 kb on + strand, within B158DRAFT_2312at 472.783 kb on - strand, within B158DRAFT_2312at 472.783 kb on - strand, within B158DRAFT_2312at 472.879 kb on + strand, within B158DRAFT_2312at 472.887 kb on - strand, within B158DRAFT_2312at 473.083 kb on + strand, within B158DRAFT_2312at 473.083 kb on + strand, within B158DRAFT_2312at 473.091 kb on - strand, within B158DRAFT_2312at 473.095 kb on + strand, within B158DRAFT_2312at 473.142 kb on - strand, within B158DRAFT_2312at 473.157 kb on + strand, within B158DRAFT_2312at 473.287 kb on + strand, within B158DRAFT_2312at 473.295 kb on - strand, within B158DRAFT_2312at 473.317 kb on - strand, within B158DRAFT_2312at 473.438 kb on + strand, within B158DRAFT_2312at 473.469 kb on + strand, within B158DRAFT_2312at 473.510 kb on - strand, within B158DRAFT_2312at 473.535 kb on + strand, within B158DRAFT_2312at 473.701 kb on + strand, within B158DRAFT_2312at 473.708 kb on - strand, within B158DRAFT_2312at 473.710 kb on + strand, within B158DRAFT_2312at 473.718 kb on - strand, within B158DRAFT_2312at 473.718 kb on - strand, within B158DRAFT_2312at 473.748 kb on + strand, within B158DRAFT_2312at 473.748 kb on + strand, within B158DRAFT_2312at 473.748 kb on + strand, within B158DRAFT_2312at 473.748 kb on + strand, within B158DRAFT_2312at 473.756 kb on - strand, within B158DRAFT_2312at 473.756 kb on - strand, within B158DRAFT_2312at 473.756 kb on - strand, within B158DRAFT_2312at 473.972 kb on - strand, within B158DRAFT_2312at 473.992 kb on + strand, within B158DRAFT_2312at 473.992 kb on + strand, within B158DRAFT_2312at 473.992 kb on + strand, within B158DRAFT_2312at 473.992 kb on + strand, within B158DRAFT_2312at 473.992 kb on + strand, within B158DRAFT_2312at 473.992 kb on + strand, within B158DRAFT_2312at 474.000 kb on - strand, within B158DRAFT_2312at 474.000 kb on - strand, within B158DRAFT_2312at 474.000 kb on - strand, within B158DRAFT_2312at 474.005 kb on - strand, within B158DRAFT_2312at 474.086 kb on + strand, within B158DRAFT_2312at 474.116 kb on + strand, within B158DRAFT_2312at 474.204 kb on + strandat 474.232 kb on + strandat 474.237 kb on + strandat 474.294 kb on + strandat 474.386 kb on - strandat 474.390 kb on - strandat 474.409 kb on + strandat 474.454 kb on + strandat 474.671 kb on + strand, within B158DRAFT_2313at 474.671 kb on + strand, within B158DRAFT_2313at 474.671 kb on + strand, within B158DRAFT_2313at 474.671 kb on + strand, within B158DRAFT_2313at 474.679 kb on - strand, within B158DRAFT_2313at 474.679 kb on - strand, within B158DRAFT_2313at 474.679 kb on - strand, within B158DRAFT_2313at 474.744 kb on - strand, within B158DRAFT_2313at 474.749 kb on - strand, within B158DRAFT_2313at 474.772 kb on + strand, within B158DRAFT_2313at 474.780 kb on - strand, within B158DRAFT_2313at 474.780 kb on - strand, within B158DRAFT_2313at 474.780 kb on - strand, within B158DRAFT_2313at 474.780 kb on - strand, within B158DRAFT_2313at 474.791 kb on - strand, within B158DRAFT_2313at 474.908 kb on + strand, within B158DRAFT_2313at 474.916 kb on - strand, within B158DRAFT_2313at 474.923 kb on + strand, within B158DRAFT_2313at 474.961 kb on - strand, within B158DRAFT_2313at 474.963 kb on + strand, within B158DRAFT_2313at 474.963 kb on + strand, within B158DRAFT_2313at 474.971 kb on - strand, within B158DRAFT_2313at 474.976 kb on - strand, within B158DRAFT_2313at 474.997 kb on - strand, within B158DRAFT_2313at 475.025 kb on - strand, within B158DRAFT_2313at 475.054 kb on - strand, within B158DRAFT_2313at 475.093 kb on + strand, within B158DRAFT_2313at 475.210 kb on + strand, within B158DRAFT_2313at 475.210 kb on + strand, within B158DRAFT_2313at 475.217 kb on - strand, within B158DRAFT_2313at 475.218 kb on - strand, within B158DRAFT_2313at 475.218 kb on - strand, within B158DRAFT_2313at 475.218 kb on - strand, within B158DRAFT_2313at 475.218 kb on - strand, within B158DRAFT_2313at 475.218 kb on - strand, within B158DRAFT_2313at 475.224 kb on - strand, within B158DRAFT_2313at 475.236 kb on - strand, within B158DRAFT_2313at 475.238 kb on + strand, within B158DRAFT_2313at 475.283 kb on - strand, within B158DRAFT_2313at 475.283 kb on - strand, within B158DRAFT_2313at 475.297 kb on + strand, within B158DRAFT_2313at 475.305 kb on - strand, within B158DRAFT_2313at 475.305 kb on - strand, within B158DRAFT_2313at 475.305 kb on - strand, within B158DRAFT_2313

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
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471,294 - -0.8
471,344 - -0.2
471,384 - -1.1
471,384 - -0.0
471,384 - -0.8
471,384 - -1.2
471,390 - -0.1
471,537 + B158DRAFT_2311 0.25 -0.9
471,549 + B158DRAFT_2311 0.26 -0.5
471,549 + B158DRAFT_2311 0.26 +1.1
471,697 + B158DRAFT_2311 0.44 -0.9
471,809 - B158DRAFT_2311 0.58 -0.2
471,860 - B158DRAFT_2311 0.65 +1.2
471,904 + B158DRAFT_2311 0.70 -0.4
471,904 + B158DRAFT_2311 0.70 -1.3
471,904 + B158DRAFT_2311 0.70 -1.0
471,904 + B158DRAFT_2311 0.70 -1.5
471,911 + B158DRAFT_2311 0.71 +1.2
471,912 - B158DRAFT_2311 0.71 -0.1
471,912 - B158DRAFT_2311 0.71 +0.5
471,912 - B158DRAFT_2311 0.71 +0.9
471,912 - B158DRAFT_2311 0.71 -1.4
471,912 - B158DRAFT_2311 0.71 +0.9
471,952 - B158DRAFT_2311 0.76 -0.4
472,027 - B158DRAFT_2311 0.85 +0.6
472,255 + +1.6
472,304 + -0.7
472,304 + -1.4
472,312 - +0.6
472,312 - +1.8
472,312 - -0.1
472,317 - -0.5
472,318 + -1.3
472,550 + B158DRAFT_2312 0.14 -0.2
472,558 + B158DRAFT_2312 0.14 -1.7
472,563 - B158DRAFT_2312 0.14 +0.7
472,601 - B158DRAFT_2312 0.16 -1.0
472,632 - B158DRAFT_2312 0.18 +1.9
472,749 + B158DRAFT_2312 0.23 -0.8
472,756 + B158DRAFT_2312 0.23 -0.8
472,764 - B158DRAFT_2312 0.24 -2.3
472,775 + B158DRAFT_2312 0.24 +0.2
472,783 - B158DRAFT_2312 0.25 -0.5
472,783 - B158DRAFT_2312 0.25 -0.3
472,879 + B158DRAFT_2312 0.29 +0.3
472,887 - B158DRAFT_2312 0.29 -0.6
473,083 + B158DRAFT_2312 0.39 -0.5
473,083 + B158DRAFT_2312 0.39 +0.5
473,091 - B158DRAFT_2312 0.39 -0.2
473,095 + B158DRAFT_2312 0.39 -1.3
473,142 - B158DRAFT_2312 0.41 -1.8
473,157 + B158DRAFT_2312 0.42 -1.4
473,287 + B158DRAFT_2312 0.48 +0.1
473,295 - B158DRAFT_2312 0.49 +0.0
473,317 - B158DRAFT_2312 0.50 -0.1
473,438 + B158DRAFT_2312 0.55 +1.4
473,469 + B158DRAFT_2312 0.57 -0.3
473,510 - B158DRAFT_2312 0.59 -0.8
473,535 + B158DRAFT_2312 0.60 -1.0
473,701 + B158DRAFT_2312 0.68 -0.2
473,708 - B158DRAFT_2312 0.68 +1.6
473,710 + B158DRAFT_2312 0.68 -1.0
473,718 - B158DRAFT_2312 0.68 -0.3
473,718 - B158DRAFT_2312 0.68 -1.2
473,748 + B158DRAFT_2312 0.70 -0.6
473,748 + B158DRAFT_2312 0.70 -0.3
473,748 + B158DRAFT_2312 0.70 +0.7
473,748 + B158DRAFT_2312 0.70 -0.6
473,756 - B158DRAFT_2312 0.70 +0.2
473,756 - B158DRAFT_2312 0.70 -0.5
473,756 - B158DRAFT_2312 0.70 +0.5
473,972 - B158DRAFT_2312 0.80 +0.6
473,992 + B158DRAFT_2312 0.81 -0.7
473,992 + B158DRAFT_2312 0.81 -0.6
473,992 + B158DRAFT_2312 0.81 -0.6
473,992 + B158DRAFT_2312 0.81 +0.2
473,992 + B158DRAFT_2312 0.81 -1.0
473,992 + B158DRAFT_2312 0.81 -0.6
474,000 - B158DRAFT_2312 0.82 -1.0
474,000 - B158DRAFT_2312 0.82 -0.4
474,000 - B158DRAFT_2312 0.82 -0.3
474,005 - B158DRAFT_2312 0.82 -0.6
474,086 + B158DRAFT_2312 0.86 -1.3
474,116 + B158DRAFT_2312 0.87 -0.3
474,204 + -0.8
474,232 + -0.4
474,237 + +0.5
474,294 + +1.1
474,386 - -0.0
474,390 - -0.7
474,409 + -0.9
474,454 + -0.7
474,671 + B158DRAFT_2313 0.17 -0.7
474,671 + B158DRAFT_2313 0.17 -0.1
474,671 + B158DRAFT_2313 0.17 -0.4
474,671 + B158DRAFT_2313 0.17 -0.6
474,679 - B158DRAFT_2313 0.17 -1.8
474,679 - B158DRAFT_2313 0.17 -0.0
474,679 - B158DRAFT_2313 0.17 -1.4
474,744 - B158DRAFT_2313 0.22 -1.0
474,749 - B158DRAFT_2313 0.22 -2.5
474,772 + B158DRAFT_2313 0.23 -1.1
474,780 - B158DRAFT_2313 0.24 -1.1
474,780 - B158DRAFT_2313 0.24 -0.6
474,780 - B158DRAFT_2313 0.24 -1.2
474,780 - B158DRAFT_2313 0.24 -0.7
474,791 - B158DRAFT_2313 0.25 -0.8
474,908 + B158DRAFT_2313 0.32 +0.2
474,916 - B158DRAFT_2313 0.33 +0.4
474,923 + B158DRAFT_2313 0.33 -0.8
474,961 - B158DRAFT_2313 0.36 -0.6
474,963 + B158DRAFT_2313 0.36 -1.1
474,963 + B158DRAFT_2313 0.36 -1.0
474,971 - B158DRAFT_2313 0.36 -0.7
474,976 - B158DRAFT_2313 0.37 +0.2
474,997 - B158DRAFT_2313 0.38 -1.4
475,025 - B158DRAFT_2313 0.40 -0.9
475,054 - B158DRAFT_2313 0.42 -0.7
475,093 + B158DRAFT_2313 0.44 -0.7
475,210 + B158DRAFT_2313 0.52 -0.9
475,210 + B158DRAFT_2313 0.52 -1.8
475,217 - B158DRAFT_2313 0.52 +0.2
475,218 - B158DRAFT_2313 0.52 -1.9
475,218 - B158DRAFT_2313 0.52 -0.2
475,218 - B158DRAFT_2313 0.52 -0.4
475,218 - B158DRAFT_2313 0.52 +0.4
475,218 - B158DRAFT_2313 0.52 +1.1
475,224 - B158DRAFT_2313 0.53 -1.2
475,236 - B158DRAFT_2313 0.53 -1.3
475,238 + B158DRAFT_2313 0.54 -2.3
475,283 - B158DRAFT_2313 0.56 +0.1
475,283 - B158DRAFT_2313 0.56 -0.7
475,297 + B158DRAFT_2313 0.57 -0.7
475,305 - B158DRAFT_2313 0.58 -0.6
475,305 - B158DRAFT_2313 0.58 -0.0
475,305 - B158DRAFT_2313 0.58 -0.4

Or see this region's nucleotide sequence