Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2160

Experiment: m.b. Cholin acetate 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2158 and B158DRAFT_2159 are separated by 4 nucleotidesB158DRAFT_2159 and B158DRAFT_2160 are separated by 116 nucleotidesB158DRAFT_2160 and B158DRAFT_2161 overlap by 1 nucleotides B158DRAFT_2158: B158DRAFT_2158 - Predicted SAM-dependent methyltransferase, at 297,085 to 298,161 _2158 B158DRAFT_2159: B158DRAFT_2159 - 7-cyano-7-deazaguanine reductase, at 298,166 to 299,002 _2159 B158DRAFT_2160: B158DRAFT_2160 - sulfite reductase (NADPH) alpha subunit (EC 1.8.1.2), at 299,119 to 300,960 _2160 B158DRAFT_2161: B158DRAFT_2161 - sulfite reductase (NADPH) beta subunit (EC 1.8.1.2), at 300,960 to 302,666 _2161 Position (kb) 299 300 301Strain fitness (log2 ratio) -2 -1 0 1 2 3at 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.156 kb on + strandat 298.164 kb on - strandat 298.164 kb on - strandat 298.164 kb on - strandat 298.164 kb on - strandat 298.164 kb on - strandat 298.164 kb on - strandat 298.164 kb on - strandat 298.164 kb on - strandat 298.187 kb on + strandat 298.200 kb on - strandat 298.233 kb on + strandat 298.336 kb on - strand, within B158DRAFT_2159at 298.374 kb on + strand, within B158DRAFT_2159at 298.410 kb on + strand, within B158DRAFT_2159at 298.428 kb on + strand, within B158DRAFT_2159at 298.449 kb on + strand, within B158DRAFT_2159at 298.517 kb on + strand, within B158DRAFT_2159at 298.552 kb on + strand, within B158DRAFT_2159at 298.574 kb on + strand, within B158DRAFT_2159at 298.625 kb on - strand, within B158DRAFT_2159at 298.625 kb on - strand, within B158DRAFT_2159at 298.625 kb on - strand, within B158DRAFT_2159at 298.625 kb on - strand, within B158DRAFT_2159at 298.652 kb on - strand, within B158DRAFT_2159at 298.705 kb on + strand, within B158DRAFT_2159at 298.887 kb on + strand, within B158DRAFT_2159at 298.887 kb on + strand, within B158DRAFT_2159at 298.974 kb on + strandat 298.974 kb on + strandat 298.979 kb on + strandat 298.979 kb on + strandat 298.979 kb on + strandat 298.982 kb on - strandat 298.984 kb on + strandat 298.987 kb on - strandat 299.101 kb on - strandat 299.102 kb on - strandat 299.146 kb on + strandat 299.196 kb on + strandat 299.201 kb on + strandat 299.204 kb on - strandat 299.204 kb on - strandat 299.204 kb on - strandat 299.204 kb on - strandat 299.204 kb on - strandat 299.204 kb on - strandat 299.209 kb on - strandat 299.234 kb on + strandat 299.234 kb on + strandat 299.234 kb on + strandat 299.234 kb on + strandat 299.234 kb on + strandat 299.242 kb on - strandat 299.242 kb on - strandat 299.242 kb on - strandat 299.288 kb on + strandat 299.288 kb on + strandat 299.288 kb on + strandat 299.296 kb on - strandat 299.398 kb on + strand, within B158DRAFT_2160at 299.408 kb on - strand, within B158DRAFT_2160at 299.486 kb on + strand, within B158DRAFT_2160at 299.486 kb on + strand, within B158DRAFT_2160at 299.486 kb on + strand, within B158DRAFT_2160at 299.486 kb on + strand, within B158DRAFT_2160at 299.494 kb on - strand, within B158DRAFT_2160at 299.517 kb on - strand, within B158DRAFT_2160at 299.539 kb on + strand, within B158DRAFT_2160at 299.584 kb on + strand, within B158DRAFT_2160at 299.696 kb on + strand, within B158DRAFT_2160at 299.729 kb on + strand, within B158DRAFT_2160at 299.907 kb on - strand, within B158DRAFT_2160at 300.022 kb on + strand, within B158DRAFT_2160at 300.085 kb on + strand, within B158DRAFT_2160at 300.293 kb on - strand, within B158DRAFT_2160at 300.418 kb on + strand, within B158DRAFT_2160at 300.418 kb on + strand, within B158DRAFT_2160at 300.426 kb on - strand, within B158DRAFT_2160at 300.428 kb on + strand, within B158DRAFT_2160at 300.428 kb on + strand, within B158DRAFT_2160at 300.512 kb on - strand, within B158DRAFT_2160at 300.512 kb on - strand, within B158DRAFT_2160at 300.524 kb on + strand, within B158DRAFT_2160at 300.688 kb on + strand, within B158DRAFT_2160at 300.747 kb on + strand, within B158DRAFT_2160at 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.785 kb on + strandat 300.793 kb on - strandat 300.793 kb on - strandat 300.793 kb on - strandat 300.793 kb on - strandat 300.810 kb on + strandat 300.880 kb on + strandat 300.921 kb on + strandat 300.921 kb on + strandat 300.921 kb on + strandat 300.921 kb on + strandat 300.929 kb on - strandat 300.948 kb on - strandat 300.967 kb on + strandat 301.123 kb on + strandat 301.123 kb on + strandat 301.149 kb on - strand, within B158DRAFT_2161at 301.194 kb on + strand, within B158DRAFT_2161at 301.200 kb on - strand, within B158DRAFT_2161at 301.416 kb on + strand, within B158DRAFT_2161at 301.505 kb on + strand, within B158DRAFT_2161at 301.553 kb on - strand, within B158DRAFT_2161at 301.562 kb on + strand, within B158DRAFT_2161at 301.728 kb on + strand, within B158DRAFT_2161at 301.751 kb on + strand, within B158DRAFT_2161at 301.803 kb on - strand, within B158DRAFT_2161at 301.843 kb on + strand, within B158DRAFT_2161at 301.851 kb on - strand, within B158DRAFT_2161at 301.851 kb on - strand, within B158DRAFT_2161at 301.897 kb on - strand, within B158DRAFT_2161

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
remove
298,156 + -0.6
298,156 + -0.3
298,156 + +0.5
298,156 + -0.6
298,156 + -0.3
298,156 + +2.3
298,156 + -0.2
298,156 + -0.8
298,156 + -0.4
298,156 + -1.1
298,164 - +0.5
298,164 - -1.4
298,164 - -1.5
298,164 - +0.7
298,164 - -0.9
298,164 - -0.9
298,164 - -1.3
298,164 - +0.0
298,187 + +0.3
298,200 - -1.9
298,233 + +0.1
298,336 - B158DRAFT_2159 0.20 -0.2
298,374 + B158DRAFT_2159 0.25 -1.9
298,410 + B158DRAFT_2159 0.29 -1.4
298,428 + B158DRAFT_2159 0.31 +0.7
298,449 + B158DRAFT_2159 0.34 -1.1
298,517 + B158DRAFT_2159 0.42 -0.5
298,552 + B158DRAFT_2159 0.46 -2.1
298,574 + B158DRAFT_2159 0.49 +0.4
298,625 - B158DRAFT_2159 0.55 -0.1
298,625 - B158DRAFT_2159 0.55 +1.3
298,625 - B158DRAFT_2159 0.55 +0.4
298,625 - B158DRAFT_2159 0.55 -0.8
298,652 - B158DRAFT_2159 0.58 +0.1
298,705 + B158DRAFT_2159 0.64 -1.0
298,887 + B158DRAFT_2159 0.86 +0.2
298,887 + B158DRAFT_2159 0.86 -2.4
298,974 + -1.8
298,974 + +0.6
298,979 + -1.4
298,979 + +0.9
298,979 + -1.0
298,982 - -0.5
298,984 + -0.3
298,987 - -2.5
299,101 - +0.4
299,102 - -0.1
299,146 + -1.2
299,196 + +2.8
299,201 + -1.0
299,204 - -0.1
299,204 - -1.5
299,204 - -0.5
299,204 - +0.2
299,204 - +0.1
299,204 - -0.6
299,209 - +2.9
299,234 + -1.0
299,234 + +0.5
299,234 + +0.4
299,234 + +0.3
299,234 + -0.4
299,242 - -0.8
299,242 - -0.3
299,242 - -1.3
299,288 + -1.2
299,288 + -1.2
299,288 + -2.3
299,296 - +0.8
299,398 + B158DRAFT_2160 0.15 +2.2
299,408 - B158DRAFT_2160 0.16 -0.3
299,486 + B158DRAFT_2160 0.20 -2.1
299,486 + B158DRAFT_2160 0.20 -0.4
299,486 + B158DRAFT_2160 0.20 -1.2
299,486 + B158DRAFT_2160 0.20 -1.1
299,494 - B158DRAFT_2160 0.20 +1.2
299,517 - B158DRAFT_2160 0.22 -1.0
299,539 + B158DRAFT_2160 0.23 +0.2
299,584 + B158DRAFT_2160 0.25 +1.2
299,696 + B158DRAFT_2160 0.31 -0.4
299,729 + B158DRAFT_2160 0.33 -0.4
299,907 - B158DRAFT_2160 0.43 -0.7
300,022 + B158DRAFT_2160 0.49 +1.5
300,085 + B158DRAFT_2160 0.52 +0.5
300,293 - B158DRAFT_2160 0.64 +0.3
300,418 + B158DRAFT_2160 0.71 +2.5
300,418 + B158DRAFT_2160 0.71 -1.5
300,426 - B158DRAFT_2160 0.71 -0.1
300,428 + B158DRAFT_2160 0.71 -1.5
300,428 + B158DRAFT_2160 0.71 -0.1
300,512 - B158DRAFT_2160 0.76 -1.0
300,512 - B158DRAFT_2160 0.76 -1.3
300,524 + B158DRAFT_2160 0.76 -1.1
300,688 + B158DRAFT_2160 0.85 -1.3
300,747 + B158DRAFT_2160 0.88 -0.7
300,785 + -1.0
300,785 + -0.7
300,785 + -1.1
300,785 + -2.5
300,785 + +0.5
300,785 + -0.8
300,785 + -0.0
300,785 + +1.1
300,785 + -0.1
300,785 + -0.3
300,785 + -0.1
300,793 - -0.3
300,793 - -0.1
300,793 - -0.9
300,793 - -1.3
300,810 + +0.2
300,880 + +2.2
300,921 + -0.3
300,921 + +0.7
300,921 + -0.5
300,921 + +0.0
300,929 - +0.5
300,948 - +0.3
300,967 + -0.8
301,123 + -1.6
301,123 + +0.9
301,149 - B158DRAFT_2161 0.11 -0.7
301,194 + B158DRAFT_2161 0.14 -2.2
301,200 - B158DRAFT_2161 0.14 -0.9
301,416 + B158DRAFT_2161 0.27 -0.6
301,505 + B158DRAFT_2161 0.32 -0.1
301,553 - B158DRAFT_2161 0.35 +0.2
301,562 + B158DRAFT_2161 0.35 -0.5
301,728 + B158DRAFT_2161 0.45 -0.9
301,751 + B158DRAFT_2161 0.46 -1.2
301,803 - B158DRAFT_2161 0.49 -0.6
301,843 + B158DRAFT_2161 0.52 -0.2
301,851 - B158DRAFT_2161 0.52 -0.1
301,851 - B158DRAFT_2161 0.52 -0.1
301,897 - B158DRAFT_2161 0.55 -1.1

Or see this region's nucleotide sequence