Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1069

Experiment: m.b. Cholin acetate 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1067 and B158DRAFT_1068 are separated by 32 nucleotidesB158DRAFT_1068 and B158DRAFT_1069 are separated by 21 nucleotidesB158DRAFT_1069 and B158DRAFT_1070 are separated by 12 nucleotidesB158DRAFT_1070 and B158DRAFT_1071 are separated by 11 nucleotides B158DRAFT_1067: B158DRAFT_1067 - hypothetical protein, at 1,107,469 to 1,107,729 _1067 B158DRAFT_1068: B158DRAFT_1068 - D-alanyl-D-alanine carboxypeptidase, at 1,107,762 to 1,108,472 _1068 B158DRAFT_1069: B158DRAFT_1069 - succinyldiaminopimelate desuccinylase (EC 3.5.1.18), at 1,108,494 to 1,109,639 _1069 B158DRAFT_1070: B158DRAFT_1070 - transcriptional regulator, Spx/MgsR family, at 1,109,652 to 1,110,017 _1070 B158DRAFT_1071: B158DRAFT_1071 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,110,029 to 1,110,853 _1071 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1107.610 kb on - strand, within B158DRAFT_1067at 1107.615 kb on + strand, within B158DRAFT_1067at 1107.621 kb on + strand, within B158DRAFT_1067at 1107.631 kb on + strand, within B158DRAFT_1067at 1107.712 kb on + strandat 1107.714 kb on - strandat 1107.736 kb on - strandat 1107.762 kb on + strandat 1107.770 kb on - strandat 1107.777 kb on - strandat 1107.814 kb on - strandat 1108.487 kb on - strandat 1108.509 kb on - strandat 1109.732 kb on - strand, within B158DRAFT_1070at 1109.755 kb on - strand, within B158DRAFT_1070at 1109.760 kb on - strand, within B158DRAFT_1070at 1109.828 kb on - strand, within B158DRAFT_1070at 1109.828 kb on - strand, within B158DRAFT_1070at 1109.867 kb on - strand, within B158DRAFT_1070at 1109.972 kb on + strand, within B158DRAFT_1070at 1109.972 kb on + strand, within B158DRAFT_1070at 1109.982 kb on - strandat 1110.005 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
remove
1,107,610 - B158DRAFT_1067 0.54 +4.6
1,107,615 + B158DRAFT_1067 0.56 +1.3
1,107,621 + B158DRAFT_1067 0.58 -1.8
1,107,631 + B158DRAFT_1067 0.62 -2.0
1,107,712 + -0.6
1,107,714 - -1.7
1,107,736 - +0.6
1,107,762 + -2.0
1,107,770 - -0.3
1,107,777 - +1.5
1,107,814 - +1.4
1,108,487 - +0.0
1,108,509 - -0.9
1,109,732 - B158DRAFT_1070 0.22 +0.0
1,109,755 - B158DRAFT_1070 0.28 -0.2
1,109,760 - B158DRAFT_1070 0.30 -0.0
1,109,828 - B158DRAFT_1070 0.48 -1.8
1,109,828 - B158DRAFT_1070 0.48 -1.2
1,109,867 - B158DRAFT_1070 0.59 -1.5
1,109,972 + B158DRAFT_1070 0.87 -0.3
1,109,972 + B158DRAFT_1070 0.87 -0.6
1,109,982 - +1.1
1,110,005 - -0.9

Or see this region's nucleotide sequence