Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1067 and B158DRAFT_1068 are separated by 32 nucleotides B158DRAFT_1068 and B158DRAFT_1069 are separated by 21 nucleotides B158DRAFT_1069 and B158DRAFT_1070 are separated by 12 nucleotides B158DRAFT_1070 and B158DRAFT_1071 are separated by 11 nucleotides
B158DRAFT_1067: B158DRAFT_1067 - hypothetical protein, at 1,107,469 to 1,107,729
_1067
B158DRAFT_1068: B158DRAFT_1068 - D-alanyl-D-alanine carboxypeptidase, at 1,107,762 to 1,108,472
_1068
B158DRAFT_1069: B158DRAFT_1069 - succinyldiaminopimelate desuccinylase (EC 3.5.1.18), at 1,108,494 to 1,109,639
_1069
B158DRAFT_1070: B158DRAFT_1070 - transcriptional regulator, Spx/MgsR family, at 1,109,652 to 1,110,017
_1070
B158DRAFT_1071: B158DRAFT_1071 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,110,029 to 1,110,853
_1071
Position (kb)
1108
1109
1110 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1107.610 kb on - strand, within B158DRAFT_1067 at 1107.615 kb on + strand, within B158DRAFT_1067 at 1107.621 kb on + strand, within B158DRAFT_1067 at 1107.631 kb on + strand, within B158DRAFT_1067 at 1107.712 kb on + strand at 1107.714 kb on - strand at 1107.736 kb on - strand at 1107.762 kb on + strand at 1107.770 kb on - strand at 1107.777 kb on - strand at 1107.814 kb on - strand at 1108.487 kb on - strand at 1108.509 kb on - strand at 1109.732 kb on - strand, within B158DRAFT_1070 at 1109.755 kb on - strand, within B158DRAFT_1070 at 1109.760 kb on - strand, within B158DRAFT_1070 at 1109.828 kb on - strand, within B158DRAFT_1070 at 1109.828 kb on - strand, within B158DRAFT_1070 at 1109.867 kb on - strand, within B158DRAFT_1070 at 1109.972 kb on + strand, within B158DRAFT_1070 at 1109.972 kb on + strand, within B158DRAFT_1070 at 1109.982 kb on - strand at 1110.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 1,107,610 - B158DRAFT_1067 0.54 +4.6 1,107,615 + B158DRAFT_1067 0.56 +1.3 1,107,621 + B158DRAFT_1067 0.58 -1.8 1,107,631 + B158DRAFT_1067 0.62 -2.0 1,107,712 + -0.6 1,107,714 - -1.7 1,107,736 - +0.6 1,107,762 + -2.0 1,107,770 - -0.3 1,107,777 - +1.5 1,107,814 - +1.4 1,108,487 - +0.0 1,108,509 - -0.9 1,109,732 - B158DRAFT_1070 0.22 +0.0 1,109,755 - B158DRAFT_1070 0.28 -0.2 1,109,760 - B158DRAFT_1070 0.30 -0.0 1,109,828 - B158DRAFT_1070 0.48 -1.8 1,109,828 - B158DRAFT_1070 0.48 -1.2 1,109,867 - B158DRAFT_1070 0.59 -1.5 1,109,972 + B158DRAFT_1070 0.87 -0.3 1,109,972 + B158DRAFT_1070 0.87 -0.6 1,109,982 - +1.1 1,110,005 - -0.9
Or see this region's nucleotide sequence