Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0890

Experiment: m.b. Cholin acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0889 and B158DRAFT_0890 are separated by 194 nucleotidesB158DRAFT_0890 and B158DRAFT_0891 are separated by 248 nucleotides B158DRAFT_0889: B158DRAFT_0889 - Small-conductance mechanosensitive channel, at 908,622 to 909,707 _0889 B158DRAFT_0890: B158DRAFT_0890 - Phosphate-selective porin, at 909,902 to 911,038 _0890 B158DRAFT_0891: B158DRAFT_0891 - ABC-type uncharacterized transport system, permease component, at 911,287 to 913,527 _0891 Position (kb) 909 910 911 912Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 908.998 kb on - strand, within B158DRAFT_0889at 909.000 kb on + strand, within B158DRAFT_0889at 909.028 kb on - strand, within B158DRAFT_0889at 909.043 kb on + strand, within B158DRAFT_0889at 909.063 kb on + strand, within B158DRAFT_0889at 909.071 kb on - strand, within B158DRAFT_0889at 909.118 kb on + strand, within B158DRAFT_0889at 909.145 kb on + strand, within B158DRAFT_0889at 909.161 kb on - strand, within B158DRAFT_0889at 909.244 kb on + strand, within B158DRAFT_0889at 909.325 kb on - strand, within B158DRAFT_0889at 909.346 kb on + strand, within B158DRAFT_0889at 909.354 kb on - strand, within B158DRAFT_0889at 909.354 kb on - strand, within B158DRAFT_0889at 909.354 kb on - strand, within B158DRAFT_0889at 909.370 kb on + strand, within B158DRAFT_0889at 909.378 kb on - strand, within B158DRAFT_0889at 909.435 kb on + strand, within B158DRAFT_0889at 909.435 kb on + strand, within B158DRAFT_0889at 909.435 kb on + strand, within B158DRAFT_0889at 909.435 kb on + strand, within B158DRAFT_0889at 909.443 kb on - strand, within B158DRAFT_0889at 909.443 kb on - strand, within B158DRAFT_0889at 909.443 kb on - strand, within B158DRAFT_0889at 909.448 kb on - strand, within B158DRAFT_0889at 909.664 kb on + strandat 909.664 kb on + strandat 909.664 kb on + strandat 909.664 kb on + strandat 909.664 kb on + strandat 909.667 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.672 kb on - strandat 909.677 kb on - strandat 909.678 kb on + strandat 909.764 kb on - strandat 909.764 kb on - strandat 909.801 kb on + strandat 909.801 kb on + strandat 909.809 kb on - strandat 909.809 kb on - strandat 910.056 kb on - strand, within B158DRAFT_0890at 910.107 kb on + strand, within B158DRAFT_0890at 910.161 kb on + strand, within B158DRAFT_0890at 910.166 kb on + strand, within B158DRAFT_0890at 910.174 kb on - strand, within B158DRAFT_0890at 910.275 kb on - strand, within B158DRAFT_0890at 910.456 kb on + strand, within B158DRAFT_0890at 910.731 kb on + strand, within B158DRAFT_0890at 910.731 kb on + strand, within B158DRAFT_0890at 910.912 kb on - strand, within B158DRAFT_0890at 910.997 kb on + strandat 911.328 kb on - strandat 911.398 kb on - strandat 911.398 kb on - strandat 911.537 kb on - strand, within B158DRAFT_0891at 911.807 kb on + strand, within B158DRAFT_0891at 911.807 kb on + strand, within B158DRAFT_0891at 911.807 kb on + strand, within B158DRAFT_0891at 911.815 kb on - strand, within B158DRAFT_0891at 911.815 kb on - strand, within B158DRAFT_0891at 911.815 kb on - strand, within B158DRAFT_0891at 911.815 kb on - strand, within B158DRAFT_0891at 911.815 kb on - strand, within B158DRAFT_0891

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
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908,998 - B158DRAFT_0889 0.35 -1.7
909,000 + B158DRAFT_0889 0.35 +0.1
909,028 - B158DRAFT_0889 0.37 -0.4
909,043 + B158DRAFT_0889 0.39 +0.2
909,063 + B158DRAFT_0889 0.41 -0.3
909,071 - B158DRAFT_0889 0.41 -0.4
909,118 + B158DRAFT_0889 0.46 -0.2
909,145 + B158DRAFT_0889 0.48 -2.7
909,161 - B158DRAFT_0889 0.50 +0.4
909,244 + B158DRAFT_0889 0.57 -0.6
909,325 - B158DRAFT_0889 0.65 +2.4
909,346 + B158DRAFT_0889 0.67 +0.7
909,354 - B158DRAFT_0889 0.67 -1.6
909,354 - B158DRAFT_0889 0.67 -0.3
909,354 - B158DRAFT_0889 0.67 -0.7
909,370 + B158DRAFT_0889 0.69 -0.7
909,378 - B158DRAFT_0889 0.70 -1.7
909,435 + B158DRAFT_0889 0.75 +0.5
909,435 + B158DRAFT_0889 0.75 +0.6
909,435 + B158DRAFT_0889 0.75 +1.1
909,435 + B158DRAFT_0889 0.75 +1.4
909,443 - B158DRAFT_0889 0.76 +0.0
909,443 - B158DRAFT_0889 0.76 -0.6
909,443 - B158DRAFT_0889 0.76 +0.2
909,448 - B158DRAFT_0889 0.76 +0.1
909,664 + -0.4
909,664 + -0.7
909,664 + -0.8
909,664 + +0.0
909,664 + +0.2
909,667 - -1.6
909,672 - -1.6
909,672 - -0.7
909,672 - -1.5
909,672 - -1.4
909,672 - -1.3
909,672 - +0.2
909,672 - +0.3
909,672 - +4.7
909,672 - -1.4
909,677 - -0.5
909,678 + -2.2
909,764 - -0.9
909,764 - -0.9
909,801 + +0.5
909,801 + -0.6
909,809 - -2.1
909,809 - +0.1
910,056 - B158DRAFT_0890 0.14 +1.8
910,107 + B158DRAFT_0890 0.18 +1.8
910,161 + B158DRAFT_0890 0.23 +1.8
910,166 + B158DRAFT_0890 0.23 +1.5
910,174 - B158DRAFT_0890 0.24 +2.8
910,275 - B158DRAFT_0890 0.33 +0.7
910,456 + B158DRAFT_0890 0.49 +2.1
910,731 + B158DRAFT_0890 0.73 +2.4
910,731 + B158DRAFT_0890 0.73 +1.6
910,912 - B158DRAFT_0890 0.89 +1.9
910,997 + +1.4
911,328 - +0.2
911,398 - +2.5
911,398 - +1.6
911,537 - B158DRAFT_0891 0.11 +1.0
911,807 + B158DRAFT_0891 0.23 +0.7
911,807 + B158DRAFT_0891 0.23 +2.6
911,807 + B158DRAFT_0891 0.23 +2.2
911,815 - B158DRAFT_0891 0.24 +1.0
911,815 - B158DRAFT_0891 0.24 +2.2
911,815 - B158DRAFT_0891 0.24 +2.2
911,815 - B158DRAFT_0891 0.24 +2.5
911,815 - B158DRAFT_0891 0.24 +3.5

Or see this region's nucleotide sequence