Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0231

Experiment: m.b. Cholin acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0229 and B158DRAFT_0230 are separated by 131 nucleotidesB158DRAFT_0230 and B158DRAFT_0231 are separated by 56 nucleotidesB158DRAFT_0231 and B158DRAFT_0232 are separated by 230 nucleotides B158DRAFT_0229: B158DRAFT_0229 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 233,428 to 234,531 _0229 B158DRAFT_0230: B158DRAFT_0230 - hypothetical protein, at 234,663 to 235,394 _0230 B158DRAFT_0231: B158DRAFT_0231 - hypothetical protein, at 235,451 to 236,239 _0231 B158DRAFT_0232: B158DRAFT_0232 - Subtilisin-like serine proteases, at 236,470 to 237,606 _0232 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 234.586 kb on + strandat 234.604 kb on - strandat 234.604 kb on - strandat 234.604 kb on - strandat 234.754 kb on + strand, within B158DRAFT_0230at 234.764 kb on + strand, within B158DRAFT_0230at 234.804 kb on + strand, within B158DRAFT_0230at 234.812 kb on - strand, within B158DRAFT_0230at 234.812 kb on - strand, within B158DRAFT_0230at 234.862 kb on + strand, within B158DRAFT_0230at 234.877 kb on + strand, within B158DRAFT_0230at 234.885 kb on - strand, within B158DRAFT_0230at 234.885 kb on - strand, within B158DRAFT_0230at 234.973 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.068 kb on + strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.076 kb on - strand, within B158DRAFT_0230at 235.114 kb on + strand, within B158DRAFT_0230at 235.125 kb on + strand, within B158DRAFT_0230at 235.125 kb on + strand, within B158DRAFT_0230at 235.125 kb on + strand, within B158DRAFT_0230at 235.133 kb on - strand, within B158DRAFT_0230at 235.133 kb on - strand, within B158DRAFT_0230at 235.133 kb on - strand, within B158DRAFT_0230at 235.142 kb on + strand, within B158DRAFT_0230at 235.233 kb on - strand, within B158DRAFT_0230at 235.238 kb on - strand, within B158DRAFT_0230at 235.321 kb on + strandat 235.339 kb on - strandat 235.352 kb on + strandat 235.358 kb on - strandat 235.511 kb on + strandat 235.516 kb on + strandat 235.519 kb on - strandat 235.674 kb on + strand, within B158DRAFT_0231at 235.679 kb on + strand, within B158DRAFT_0231at 235.744 kb on + strand, within B158DRAFT_0231at 235.752 kb on - strand, within B158DRAFT_0231at 235.764 kb on + strand, within B158DRAFT_0231at 235.779 kb on - strand, within B158DRAFT_0231at 235.779 kb on - strand, within B158DRAFT_0231at 235.783 kb on + strand, within B158DRAFT_0231at 235.786 kb on - strand, within B158DRAFT_0231at 235.791 kb on - strand, within B158DRAFT_0231at 235.791 kb on - strand, within B158DRAFT_0231at 235.880 kb on + strand, within B158DRAFT_0231at 235.880 kb on + strand, within B158DRAFT_0231at 235.931 kb on - strand, within B158DRAFT_0231at 235.937 kb on - strand, within B158DRAFT_0231at 235.991 kb on - strand, within B158DRAFT_0231at 236.025 kb on + strand, within B158DRAFT_0231at 236.025 kb on + strand, within B158DRAFT_0231at 236.025 kb on + strand, within B158DRAFT_0231at 236.025 kb on + strand, within B158DRAFT_0231at 236.025 kb on + strand, within B158DRAFT_0231at 236.031 kb on - strand, within B158DRAFT_0231at 236.033 kb on - strand, within B158DRAFT_0231at 236.033 kb on - strand, within B158DRAFT_0231at 236.033 kb on - strand, within B158DRAFT_0231at 236.033 kb on - strand, within B158DRAFT_0231at 236.033 kb on - strand, within B158DRAFT_0231at 236.033 kb on - strand, within B158DRAFT_0231at 236.033 kb on - strand, within B158DRAFT_0231at 236.053 kb on + strand, within B158DRAFT_0231at 236.053 kb on + strand, within B158DRAFT_0231at 236.061 kb on - strand, within B158DRAFT_0231at 236.150 kb on + strand, within B158DRAFT_0231at 236.171 kb on - strandat 236.191 kb on + strandat 236.191 kb on + strandat 236.193 kb on + strandat 236.199 kb on - strandat 236.204 kb on - strandat 236.222 kb on - strandat 236.308 kb on - strandat 236.468 kb on - strandat 236.500 kb on + strandat 236.500 kb on - strandat 236.568 kb on + strandat 236.590 kb on + strand, within B158DRAFT_0232at 236.590 kb on + strand, within B158DRAFT_0232at 236.646 kb on + strand, within B158DRAFT_0232at 236.646 kb on + strand, within B158DRAFT_0232at 236.651 kb on + strand, within B158DRAFT_0232at 236.654 kb on - strand, within B158DRAFT_0232at 236.659 kb on - strand, within B158DRAFT_0232at 236.676 kb on + strand, within B158DRAFT_0232at 236.722 kb on + strand, within B158DRAFT_0232at 236.776 kb on + strand, within B158DRAFT_0232at 236.787 kb on - strand, within B158DRAFT_0232at 236.803 kb on + strand, within B158DRAFT_0232at 236.803 kb on + strand, within B158DRAFT_0232at 236.803 kb on + strand, within B158DRAFT_0232at 236.811 kb on - strand, within B158DRAFT_0232at 236.815 kb on + strand, within B158DRAFT_0232at 236.815 kb on + strand, within B158DRAFT_0232at 236.816 kb on - strand, within B158DRAFT_0232at 236.818 kb on - strand, within B158DRAFT_0232at 236.823 kb on - strand, within B158DRAFT_0232at 236.878 kb on - strand, within B158DRAFT_0232at 236.925 kb on - strand, within B158DRAFT_0232at 236.954 kb on - strand, within B158DRAFT_0232at 237.041 kb on - strand, within B158DRAFT_0232at 237.097 kb on - strand, within B158DRAFT_0232at 237.155 kb on - strand, within B158DRAFT_0232at 237.189 kb on - strand, within B158DRAFT_0232at 237.226 kb on + strand, within B158DRAFT_0232at 237.226 kb on + strand, within B158DRAFT_0232at 237.234 kb on - strand, within B158DRAFT_0232at 237.234 kb on - strand, within B158DRAFT_0232at 237.235 kb on + strand, within B158DRAFT_0232at 237.235 kb on + strand, within B158DRAFT_0232

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
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234,586 + +1.7
234,604 - +0.4
234,604 - -0.8
234,604 - -0.5
234,754 + B158DRAFT_0230 0.12 -1.0
234,764 + B158DRAFT_0230 0.14 +1.9
234,804 + B158DRAFT_0230 0.19 +0.2
234,812 - B158DRAFT_0230 0.20 +1.2
234,812 - B158DRAFT_0230 0.20 -0.8
234,862 + B158DRAFT_0230 0.27 -1.9
234,877 + B158DRAFT_0230 0.29 -0.7
234,885 - B158DRAFT_0230 0.30 -0.4
234,885 - B158DRAFT_0230 0.30 -1.9
234,973 + B158DRAFT_0230 0.42 -2.0
235,068 + B158DRAFT_0230 0.55 -0.6
235,068 + B158DRAFT_0230 0.55 +1.2
235,068 + B158DRAFT_0230 0.55 +3.8
235,068 + B158DRAFT_0230 0.55 -0.6
235,068 + B158DRAFT_0230 0.55 -1.4
235,068 + B158DRAFT_0230 0.55 -3.4
235,076 - B158DRAFT_0230 0.56 -1.2
235,076 - B158DRAFT_0230 0.56 -0.4
235,076 - B158DRAFT_0230 0.56 +1.3
235,076 - B158DRAFT_0230 0.56 -0.7
235,076 - B158DRAFT_0230 0.56 -1.0
235,076 - B158DRAFT_0230 0.56 -0.1
235,076 - B158DRAFT_0230 0.56 +0.1
235,114 + B158DRAFT_0230 0.62 -0.9
235,125 + B158DRAFT_0230 0.63 -1.1
235,125 + B158DRAFT_0230 0.63 -0.9
235,125 + B158DRAFT_0230 0.63 +0.2
235,133 - B158DRAFT_0230 0.64 -1.9
235,133 - B158DRAFT_0230 0.64 -0.6
235,133 - B158DRAFT_0230 0.64 -0.1
235,142 + B158DRAFT_0230 0.65 -1.8
235,233 - B158DRAFT_0230 0.78 -0.0
235,238 - B158DRAFT_0230 0.79 -0.0
235,321 + -0.8
235,339 - +0.5
235,352 + +1.4
235,358 - -0.2
235,511 + -0.0
235,516 + -2.1
235,519 - -0.8
235,674 + B158DRAFT_0231 0.28 -0.3
235,679 + B158DRAFT_0231 0.29 +3.3
235,744 + B158DRAFT_0231 0.37 -0.7
235,752 - B158DRAFT_0231 0.38 -0.1
235,764 + B158DRAFT_0231 0.40 +0.3
235,779 - B158DRAFT_0231 0.42 -0.6
235,779 - B158DRAFT_0231 0.42 -2.0
235,783 + B158DRAFT_0231 0.42 +0.4
235,786 - B158DRAFT_0231 0.42 -0.7
235,791 - B158DRAFT_0231 0.43 +0.6
235,791 - B158DRAFT_0231 0.43 -0.4
235,880 + B158DRAFT_0231 0.54 -1.5
235,880 + B158DRAFT_0231 0.54 -0.9
235,931 - B158DRAFT_0231 0.61 +0.3
235,937 - B158DRAFT_0231 0.62 -1.7
235,991 - B158DRAFT_0231 0.68 +1.4
236,025 + B158DRAFT_0231 0.73 +1.5
236,025 + B158DRAFT_0231 0.73 +0.4
236,025 + B158DRAFT_0231 0.73 -1.2
236,025 + B158DRAFT_0231 0.73 -1.3
236,025 + B158DRAFT_0231 0.73 -0.9
236,031 - B158DRAFT_0231 0.74 -0.5
236,033 - B158DRAFT_0231 0.74 +4.6
236,033 - B158DRAFT_0231 0.74 -1.0
236,033 - B158DRAFT_0231 0.74 +1.1
236,033 - B158DRAFT_0231 0.74 +1.4
236,033 - B158DRAFT_0231 0.74 -0.7
236,033 - B158DRAFT_0231 0.74 -0.6
236,033 - B158DRAFT_0231 0.74 +1.0
236,053 + B158DRAFT_0231 0.76 -0.2
236,053 + B158DRAFT_0231 0.76 +1.2
236,061 - B158DRAFT_0231 0.77 -0.3
236,150 + B158DRAFT_0231 0.89 -0.3
236,171 - -0.2
236,191 + -0.5
236,191 + -0.2
236,193 + -0.1
236,199 - -1.6
236,204 - +0.8
236,222 - -1.1
236,308 - -0.1
236,468 - +0.3
236,500 + +0.4
236,500 - -1.2
236,568 + -0.4
236,590 + B158DRAFT_0232 0.11 +0.7
236,590 + B158DRAFT_0232 0.11 -1.1
236,646 + B158DRAFT_0232 0.15 +1.4
236,646 + B158DRAFT_0232 0.15 -1.3
236,651 + B158DRAFT_0232 0.16 -1.6
236,654 - B158DRAFT_0232 0.16 -1.2
236,659 - B158DRAFT_0232 0.17 -1.2
236,676 + B158DRAFT_0232 0.18 -0.6
236,722 + B158DRAFT_0232 0.22 -1.1
236,776 + B158DRAFT_0232 0.27 +0.3
236,787 - B158DRAFT_0232 0.28 -0.6
236,803 + B158DRAFT_0232 0.29 -0.8
236,803 + B158DRAFT_0232 0.29 +0.5
236,803 + B158DRAFT_0232 0.29 -0.9
236,811 - B158DRAFT_0232 0.30 -1.6
236,815 + B158DRAFT_0232 0.30 -1.6
236,815 + B158DRAFT_0232 0.30 -0.5
236,816 - B158DRAFT_0232 0.30 +0.5
236,818 - B158DRAFT_0232 0.31 +0.5
236,823 - B158DRAFT_0232 0.31 -1.1
236,878 - B158DRAFT_0232 0.36 -0.7
236,925 - B158DRAFT_0232 0.40 +1.1
236,954 - B158DRAFT_0232 0.43 -1.3
237,041 - B158DRAFT_0232 0.50 -1.8
237,097 - B158DRAFT_0232 0.55 -0.7
237,155 - B158DRAFT_0232 0.60 +0.3
237,189 - B158DRAFT_0232 0.63 -1.7
237,226 + B158DRAFT_0232 0.66 -0.3
237,226 + B158DRAFT_0232 0.66 -0.3
237,234 - B158DRAFT_0232 0.67 -0.8
237,234 - B158DRAFT_0232 0.67 -1.1
237,235 + B158DRAFT_0232 0.67 +0.5
237,235 + B158DRAFT_0232 0.67 -0.0

Or see this region's nucleotide sequence