Strain Fitness in Agrobacterium fabrum C58 around Atu3161

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3159 and Atu3160 are separated by 53 nucleotidesAtu3160 and Atu3161 are separated by 17 nucleotidesAtu3161 and Atu3162 are separated by 151 nucleotides Atu3159: Atu3159 - 3-hydroxyisobutyrate dehydrogenase, at 168,140 to 169,024 Atu3159 Atu3160: Atu3160 - hypothetical protein, at 169,078 to 169,380 Atu3160 Atu3161: Atu3161 - hypothetical protein, at 169,398 to 170,867 Atu3161 Atu3162: Atu3162 - LacI family transcriptional regulator, at 171,019 to 172,032 Atu3162 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1at 168.482 kb on - strand, within Atu3159at 168.569 kb on - strand, within Atu3159at 168.586 kb on - strand, within Atu3159at 168.610 kb on - strand, within Atu3159at 168.619 kb on + strand, within Atu3159at 168.624 kb on + strand, within Atu3159at 168.640 kb on - strand, within Atu3159at 168.645 kb on - strand, within Atu3159at 168.689 kb on + strand, within Atu3159at 168.798 kb on + strand, within Atu3159at 168.820 kb on - strand, within Atu3159at 168.838 kb on - strand, within Atu3159at 168.853 kb on + strand, within Atu3159at 169.136 kb on - strand, within Atu3160at 169.166 kb on + strand, within Atu3160at 169.214 kb on - strand, within Atu3160at 169.370 kb on + strandat 169.450 kb on + strandat 169.518 kb on - strandat 169.541 kb on + strandat 169.541 kb on + strandat 169.607 kb on + strand, within Atu3161at 169.608 kb on - strand, within Atu3161at 169.688 kb on + strand, within Atu3161at 169.719 kb on - strand, within Atu3161at 169.719 kb on - strand, within Atu3161at 169.752 kb on - strand, within Atu3161at 169.833 kb on - strand, within Atu3161at 169.842 kb on + strand, within Atu3161at 169.895 kb on - strand, within Atu3161at 169.940 kb on - strand, within Atu3161at 169.995 kb on + strand, within Atu3161at 170.037 kb on + strand, within Atu3161at 170.037 kb on + strand, within Atu3161at 170.037 kb on + strand, within Atu3161at 170.045 kb on - strand, within Atu3161at 170.045 kb on - strand, within Atu3161at 170.128 kb on + strand, within Atu3161at 170.191 kb on + strand, within Atu3161at 170.191 kb on + strand, within Atu3161at 170.239 kb on - strand, within Atu3161at 170.249 kb on + strand, within Atu3161at 170.282 kb on - strand, within Atu3161at 170.305 kb on + strand, within Atu3161at 170.305 kb on + strand, within Atu3161at 170.317 kb on + strand, within Atu3161at 170.317 kb on + strand, within Atu3161at 170.361 kb on - strand, within Atu3161at 170.397 kb on - strand, within Atu3161at 170.506 kb on + strand, within Atu3161at 170.551 kb on + strand, within Atu3161at 170.686 kb on + strand, within Atu3161at 170.694 kb on - strand, within Atu3161at 170.710 kb on + strand, within Atu3161at 170.729 kb on - strandat 170.795 kb on + strandat 170.817 kb on - strandat 170.848 kb on - strandat 170.901 kb on + strandat 170.901 kb on + strandat 170.909 kb on - strandat 170.949 kb on + strandat 170.949 kb on + strandat 170.955 kb on - strandat 170.957 kb on - strandat 171.044 kb on - strandat 171.044 kb on - strandat 171.044 kb on - strandat 171.055 kb on - strandat 171.122 kb on + strand, within Atu3162at 171.122 kb on + strand, within Atu3162at 171.201 kb on + strand, within Atu3162at 171.253 kb on - strand, within Atu3162at 171.335 kb on + strand, within Atu3162at 171.338 kb on - strand, within Atu3162at 171.338 kb on - strand, within Atu3162at 171.415 kb on - strand, within Atu3162at 171.448 kb on + strand, within Atu3162at 171.487 kb on - strand, within Atu3162at 171.487 kb on - strand, within Atu3162at 171.595 kb on - strand, within Atu3162at 171.713 kb on - strand, within Atu3162at 171.774 kb on - strand, within Atu3162at 171.811 kb on - strand, within Atu3162

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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168,482 - Atu3159 0.39 +0.2
168,569 - Atu3159 0.48 +0.0
168,586 - Atu3159 0.50 -0.7
168,610 - Atu3159 0.53 +0.1
168,619 + Atu3159 0.54 +0.2
168,624 + Atu3159 0.55 -2.6
168,640 - Atu3159 0.56 +0.2
168,645 - Atu3159 0.57 +0.3
168,689 + Atu3159 0.62 -0.3
168,798 + Atu3159 0.74 +0.0
168,820 - Atu3159 0.77 -0.3
168,838 - Atu3159 0.79 -0.4
168,853 + Atu3159 0.81 +0.3
169,136 - Atu3160 0.19 +0.3
169,166 + Atu3160 0.29 +0.1
169,214 - Atu3160 0.45 +0.6
169,370 + -0.2
169,450 + +0.3
169,518 - +0.1
169,541 + +0.2
169,541 + -0.0
169,607 + Atu3161 0.14 +0.2
169,608 - Atu3161 0.14 +0.1
169,688 + Atu3161 0.20 +0.7
169,719 - Atu3161 0.22 +0.3
169,719 - Atu3161 0.22 -0.2
169,752 - Atu3161 0.24 -0.4
169,833 - Atu3161 0.30 -0.9
169,842 + Atu3161 0.30 -0.2
169,895 - Atu3161 0.34 -0.1
169,940 - Atu3161 0.37 +0.5
169,995 + Atu3161 0.41 +0.1
170,037 + Atu3161 0.43 -0.2
170,037 + Atu3161 0.43 +0.3
170,037 + Atu3161 0.43 +0.5
170,045 - Atu3161 0.44 +0.2
170,045 - Atu3161 0.44 +0.7
170,128 + Atu3161 0.50 -0.2
170,191 + Atu3161 0.54 +0.0
170,191 + Atu3161 0.54 -0.2
170,239 - Atu3161 0.57 +0.2
170,249 + Atu3161 0.58 +0.2
170,282 - Atu3161 0.60 +1.1
170,305 + Atu3161 0.62 +0.3
170,305 + Atu3161 0.62 -0.4
170,317 + Atu3161 0.63 -0.4
170,317 + Atu3161 0.63 +0.3
170,361 - Atu3161 0.66 -0.8
170,397 - Atu3161 0.68 +0.1
170,506 + Atu3161 0.75 +0.1
170,551 + Atu3161 0.78 +0.2
170,686 + Atu3161 0.88 -0.3
170,694 - Atu3161 0.88 +0.2
170,710 + Atu3161 0.89 +0.4
170,729 - +0.5
170,795 + -0.5
170,817 - +0.0
170,848 - +0.5
170,901 + -0.0
170,901 + +0.4
170,909 - +0.0
170,949 + +0.3
170,949 + -0.1
170,955 - +0.2
170,957 - -0.1
171,044 - +0.2
171,044 - +0.9
171,044 - +0.4
171,055 - -0.1
171,122 + Atu3162 0.10 -0.5
171,122 + Atu3162 0.10 -1.4
171,201 + Atu3162 0.18 +0.3
171,253 - Atu3162 0.23 +0.1
171,335 + Atu3162 0.31 +0.0
171,338 - Atu3162 0.31 +1.3
171,338 - Atu3162 0.31 -0.1
171,415 - Atu3162 0.39 -0.0
171,448 + Atu3162 0.42 +0.0
171,487 - Atu3162 0.46 -0.3
171,487 - Atu3162 0.46 -0.1
171,595 - Atu3162 0.57 -0.2
171,713 - Atu3162 0.68 -0.1
171,774 - Atu3162 0.74 -0.1
171,811 - Atu3162 0.78 +0.3

Or see this region's nucleotide sequence