Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1285 and Echvi_1286 overlap by 4 nucleotides Echvi_1286 and Echvi_1287 are separated by 102 nucleotides
Echvi_1285: Echvi_1285 - Transketolase, C-terminal subunit, at 1,473,525 to 1,474,484
_1285
Echvi_1286: Echvi_1286 - Transketolase, N-terminal subunit, at 1,474,481 to 1,475,323
_1286
Echvi_1287: Echvi_1287 - L-fucose isomerase and related proteins, at 1,475,426 to 1,476,853
_1287
Position (kb)
1474
1475
1476 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1473.522 kb on + strand at 1473.526 kb on + strand at 1473.526 kb on + strand at 1473.527 kb on - strand at 1473.585 kb on + strand at 1473.609 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.615 kb on - strand at 1473.703 kb on + strand, within Echvi_1285 at 1473.783 kb on + strand, within Echvi_1285 at 1473.783 kb on + strand, within Echvi_1285 at 1473.783 kb on + strand, within Echvi_1285 at 1473.883 kb on - strand, within Echvi_1285 at 1474.033 kb on + strand, within Echvi_1285 at 1474.033 kb on + strand, within Echvi_1285 at 1474.033 kb on + strand, within Echvi_1285 at 1474.311 kb on + strand, within Echvi_1285 at 1474.311 kb on + strand, within Echvi_1285 at 1474.328 kb on - strand, within Echvi_1285 at 1474.438 kb on - strand at 1474.545 kb on + strand at 1474.749 kb on - strand, within Echvi_1286 at 1474.799 kb on - strand, within Echvi_1286 at 1474.803 kb on + strand, within Echvi_1286 at 1474.803 kb on + strand, within Echvi_1286 at 1474.803 kb on + strand, within Echvi_1286 at 1474.804 kb on - strand, within Echvi_1286 at 1474.834 kb on + strand, within Echvi_1286 at 1474.835 kb on - strand, within Echvi_1286 at 1474.837 kb on - strand, within Echvi_1286 at 1474.952 kb on + strand, within Echvi_1286 at 1474.952 kb on + strand, within Echvi_1286 at 1475.017 kb on + strand, within Echvi_1286 at 1475.139 kb on + strand, within Echvi_1286 at 1475.139 kb on + strand, within Echvi_1286 at 1475.265 kb on + strand at 1475.266 kb on - strand at 1475.346 kb on + strand at 1475.347 kb on - strand at 1475.439 kb on + strand at 1475.440 kb on - strand at 1475.455 kb on + strand at 1475.457 kb on + strand at 1475.482 kb on + strand at 1475.491 kb on + strand at 1475.539 kb on + strand at 1475.539 kb on + strand at 1475.596 kb on + strand, within Echvi_1287 at 1475.634 kb on + strand, within Echvi_1287 at 1475.844 kb on + strand, within Echvi_1287 at 1475.844 kb on + strand, within Echvi_1287 at 1475.845 kb on - strand, within Echvi_1287 at 1475.901 kb on + strand, within Echvi_1287 at 1475.901 kb on + strand, within Echvi_1287 at 1475.902 kb on - strand, within Echvi_1287 at 1475.971 kb on + strand, within Echvi_1287 at 1475.986 kb on + strand, within Echvi_1287 at 1476.056 kb on - strand, within Echvi_1287 at 1476.130 kb on - strand, within Echvi_1287 at 1476.248 kb on + strand, within Echvi_1287 at 1476.274 kb on + strand, within Echvi_1287
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,473,522 + -2.0 1,473,526 + -0.2 1,473,526 + +0.2 1,473,527 - +0.8 1,473,585 + -1.0 1,473,609 + +0.2 1,473,614 + +1.6 1,473,614 + -1.3 1,473,614 + -1.0 1,473,614 + +0.4 1,473,614 + +0.5 1,473,614 + +0.1 1,473,614 + -2.2 1,473,614 + +0.3 1,473,615 - -0.1 1,473,703 + Echvi_1285 0.19 +0.8 1,473,783 + Echvi_1285 0.27 -0.1 1,473,783 + Echvi_1285 0.27 -0.3 1,473,783 + Echvi_1285 0.27 +0.4 1,473,883 - Echvi_1285 0.37 +2.1 1,474,033 + Echvi_1285 0.53 -1.0 1,474,033 + Echvi_1285 0.53 -1.1 1,474,033 + Echvi_1285 0.53 +0.8 1,474,311 + Echvi_1285 0.82 -1.4 1,474,311 + Echvi_1285 0.82 +0.4 1,474,328 - Echvi_1285 0.84 -0.2 1,474,438 - -0.3 1,474,545 + -0.2 1,474,749 - Echvi_1286 0.32 +0.3 1,474,799 - Echvi_1286 0.38 +0.1 1,474,803 + Echvi_1286 0.38 -0.7 1,474,803 + Echvi_1286 0.38 +1.0 1,474,803 + Echvi_1286 0.38 +0.9 1,474,804 - Echvi_1286 0.38 +1.0 1,474,834 + Echvi_1286 0.42 +1.8 1,474,835 - Echvi_1286 0.42 +1.0 1,474,837 - Echvi_1286 0.42 -0.3 1,474,952 + Echvi_1286 0.56 +0.6 1,474,952 + Echvi_1286 0.56 +0.5 1,475,017 + Echvi_1286 0.64 -1.0 1,475,139 + Echvi_1286 0.78 +1.0 1,475,139 + Echvi_1286 0.78 +0.3 1,475,265 + -0.0 1,475,266 - -1.7 1,475,346 + -1.0 1,475,347 - +2.1 1,475,439 + +0.5 1,475,440 - -1.8 1,475,455 + -1.5 1,475,457 + +0.1 1,475,482 + -1.3 1,475,491 + -1.0 1,475,539 + -1.3 1,475,539 + +0.7 1,475,596 + Echvi_1287 0.12 +1.1 1,475,634 + Echvi_1287 0.15 -1.3 1,475,844 + Echvi_1287 0.29 -0.3 1,475,844 + Echvi_1287 0.29 -1.8 1,475,845 - Echvi_1287 0.29 -0.1 1,475,901 + Echvi_1287 0.33 +0.1 1,475,901 + Echvi_1287 0.33 -1.3 1,475,902 - Echvi_1287 0.33 -1.2 1,475,971 + Echvi_1287 0.38 -1.7 1,475,986 + Echvi_1287 0.39 +1.4 1,476,056 - Echvi_1287 0.44 -1.5 1,476,130 - Echvi_1287 0.49 -0.2 1,476,248 + Echvi_1287 0.58 -1.1 1,476,274 + Echvi_1287 0.59 +0.5
Or see this region's nucleotide sequence