Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5501 and Atu5502 are separated by 114 nucleotides Atu5502 and Atu5503 are separated by 109 nucleotides Atu5503 and Atu5504 are separated by 185 nucleotides Atu5504 and Atu5505 are separated by 3 nucleotides
Atu5501: Atu5501 - hypothetical protein, at 492,412 to 493,074
Atu5501
Atu5502: Atu5502 - hypothetical protein, at 493,189 to 493,944
Atu5502
Atu5503: Atu5503 - hypothetical protein, at 494,054 to 495,511
Atu5503
Atu5504: Atu5504 - hypothetical protein, at 495,697 to 496,290
Atu5504
Atu5505: Atu5505 - two component response regulator, at 496,294 to 496,959
Atu5505
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1
2 at 493.089 kb on + strand at 493.089 kb on + strand at 493.218 kb on + strand at 493.417 kb on + strand, within Atu5502 at 493.417 kb on + strand, within Atu5502 at 493.478 kb on - strand, within Atu5502 at 493.483 kb on - strand, within Atu5502 at 493.766 kb on + strand, within Atu5502 at 493.766 kb on + strand, within Atu5502 at 493.768 kb on + strand, within Atu5502 at 493.823 kb on + strand, within Atu5502 at 493.825 kb on + strand, within Atu5502 at 493.833 kb on + strand, within Atu5502 at 494.030 kb on - strand at 494.066 kb on + strand at 494.066 kb on - strand at 494.066 kb on - strand at 494.072 kb on - strand at 494.090 kb on + strand at 494.109 kb on + strand at 494.116 kb on - strand at 494.186 kb on + strand at 494.196 kb on + strand at 494.204 kb on - strand, within Atu5503 at 494.219 kb on + strand, within Atu5503 at 494.221 kb on + strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.239 kb on - strand, within Atu5503 at 494.242 kb on + strand, within Atu5503 at 494.354 kb on + strand, within Atu5503 at 494.355 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.376 kb on - strand, within Atu5503 at 494.407 kb on + strand, within Atu5503 at 494.407 kb on + strand, within Atu5503 at 494.407 kb on + strand, within Atu5503 at 494.407 kb on - strand, within Atu5503 at 494.488 kb on - strand, within Atu5503 at 494.692 kb on - strand, within Atu5503 at 494.766 kb on - strand, within Atu5503 at 494.771 kb on - strand, within Atu5503 at 494.771 kb on - strand, within Atu5503 at 494.783 kb on + strand, within Atu5503 at 494.810 kb on - strand, within Atu5503 at 494.821 kb on + strand, within Atu5503 at 494.900 kb on - strand, within Atu5503 at 494.903 kb on - strand, within Atu5503 at 494.939 kb on + strand, within Atu5503 at 494.963 kb on - strand, within Atu5503 at 494.974 kb on + strand, within Atu5503 at 494.982 kb on - strand, within Atu5503 at 495.062 kb on + strand, within Atu5503 at 495.072 kb on + strand, within Atu5503 at 495.072 kb on + strand, within Atu5503 at 495.072 kb on + strand, within Atu5503 at 495.153 kb on + strand, within Atu5503 at 495.158 kb on + strand, within Atu5503 at 495.158 kb on + strand, within Atu5503 at 495.161 kb on - strand, within Atu5503 at 495.161 kb on - strand, within Atu5503 at 495.166 kb on - strand, within Atu5503 at 495.245 kb on + strand, within Atu5503 at 495.253 kb on - strand, within Atu5503 at 495.388 kb on + strand at 495.388 kb on + strand at 495.497 kb on - strand at 495.497 kb on - strand at 495.569 kb on - strand at 495.589 kb on - strand at 495.589 kb on - strand at 495.645 kb on + strand at 495.653 kb on - strand at 495.702 kb on - strand at 495.709 kb on + strand at 495.754 kb on + strand at 495.762 kb on - strand, within Atu5504 at 495.849 kb on - strand, within Atu5504 at 495.870 kb on - strand, within Atu5504 at 496.081 kb on + strand, within Atu5504 at 496.081 kb on + strand, within Atu5504 at 496.110 kb on - strand, within Atu5504 at 496.184 kb on - strand, within Atu5504 at 496.292 kb on - strand at 496.323 kb on + strand at 496.324 kb on + strand at 496.333 kb on - strand at 496.338 kb on - strand at 496.370 kb on + strand, within Atu5505 at 496.453 kb on - strand, within Atu5505 at 496.468 kb on + strand, within Atu5505
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 493,089 + -0.3 493,089 + +0.0 493,218 + +0.4 493,417 + Atu5502 0.30 +0.2 493,417 + Atu5502 0.30 -1.0 493,478 - Atu5502 0.38 -0.8 493,483 - Atu5502 0.39 +0.4 493,766 + Atu5502 0.76 +0.4 493,766 + Atu5502 0.76 +0.1 493,768 + Atu5502 0.77 +2.0 493,823 + Atu5502 0.84 +0.2 493,825 + Atu5502 0.84 +1.1 493,833 + Atu5502 0.85 +0.5 494,030 - +0.7 494,066 + -0.1 494,066 - +0.4 494,066 - +0.4 494,072 - +0.8 494,090 + +0.6 494,109 + +0.7 494,116 - -0.3 494,186 + +0.1 494,196 + +0.9 494,204 - Atu5503 0.10 +2.4 494,219 + Atu5503 0.11 +0.0 494,221 + Atu5503 0.11 -1.4 494,229 - Atu5503 0.12 +0.5 494,229 - Atu5503 0.12 -0.5 494,229 - Atu5503 0.12 +0.2 494,229 - Atu5503 0.12 +0.5 494,239 - Atu5503 0.13 +0.8 494,242 + Atu5503 0.13 -0.5 494,354 + Atu5503 0.21 +1.8 494,355 + Atu5503 0.21 -0.7 494,368 + Atu5503 0.22 +1.1 494,368 + Atu5503 0.22 +1.8 494,368 + Atu5503 0.22 -0.4 494,368 + Atu5503 0.22 +1.2 494,376 - Atu5503 0.22 -1.7 494,407 + Atu5503 0.24 +0.3 494,407 + Atu5503 0.24 +0.2 494,407 + Atu5503 0.24 +1.0 494,407 - Atu5503 0.24 +0.5 494,488 - Atu5503 0.30 +0.3 494,692 - Atu5503 0.44 +0.2 494,766 - Atu5503 0.49 +1.4 494,771 - Atu5503 0.49 +1.3 494,771 - Atu5503 0.49 +0.1 494,783 + Atu5503 0.50 +1.6 494,810 - Atu5503 0.52 +0.1 494,821 + Atu5503 0.53 +1.4 494,900 - Atu5503 0.58 +0.5 494,903 - Atu5503 0.58 +1.0 494,939 + Atu5503 0.61 +1.0 494,963 - Atu5503 0.62 -0.3 494,974 + Atu5503 0.63 +0.4 494,982 - Atu5503 0.64 +1.0 495,062 + Atu5503 0.69 +1.1 495,072 + Atu5503 0.70 +1.4 495,072 + Atu5503 0.70 +0.9 495,072 + Atu5503 0.70 +0.3 495,153 + Atu5503 0.75 -0.9 495,158 + Atu5503 0.76 +0.8 495,158 + Atu5503 0.76 +0.5 495,161 - Atu5503 0.76 +1.2 495,161 - Atu5503 0.76 +0.7 495,166 - Atu5503 0.76 -0.2 495,245 + Atu5503 0.82 +1.2 495,253 - Atu5503 0.82 +0.8 495,388 + +0.0 495,388 + +1.8 495,497 - +0.5 495,497 - +1.6 495,569 - +0.4 495,589 - +0.5 495,589 - +1.6 495,645 + +2.0 495,653 - +0.4 495,702 - +0.1 495,709 + -0.5 495,754 + -0.1 495,762 - Atu5504 0.11 +0.1 495,849 - Atu5504 0.26 -0.1 495,870 - Atu5504 0.29 +0.6 496,081 + Atu5504 0.65 +0.2 496,081 + Atu5504 0.65 -0.2 496,110 - Atu5504 0.70 +2.4 496,184 - Atu5504 0.82 -0.4 496,292 - +0.7 496,323 + -1.3 496,324 + +0.2 496,333 - +0.0 496,338 - +0.3 496,370 + Atu5505 0.11 -1.2 496,453 - Atu5505 0.24 +0.8 496,468 + Atu5505 0.26 +0.2
Or see this region's nucleotide sequence