Strain Fitness in Agrobacterium fabrum C58 around Atu0945

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0944 and Atu0945 are separated by 258 nucleotidesAtu0945 and Atu0946 are separated by 150 nucleotides Atu0944: Atu0944 - sucrose hydrolase, at 931,736 to 933,367 Atu0944 Atu0945: Atu0945 - hypothetical protein, at 933,626 to 935,086 Atu0945 Atu0946: Atu0946 - dehydrogenase, at 935,237 to 936,337 Atu0946 Position (kb) 933 934 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1at 932.695 kb on + strand, within Atu0944at 932.735 kb on - strand, within Atu0944at 932.742 kb on + strand, within Atu0944at 932.750 kb on - strand, within Atu0944at 932.750 kb on - strand, within Atu0944at 932.752 kb on + strand, within Atu0944at 932.760 kb on - strand, within Atu0944at 932.796 kb on - strand, within Atu0944at 932.838 kb on - strand, within Atu0944at 932.855 kb on + strand, within Atu0944at 932.903 kb on - strand, within Atu0944at 932.905 kb on - strand, within Atu0944at 932.932 kb on - strand, within Atu0944at 932.982 kb on + strand, within Atu0944at 933.030 kb on - strand, within Atu0944at 933.058 kb on - strand, within Atu0944at 933.117 kb on + strand, within Atu0944at 933.130 kb on - strand, within Atu0944at 933.171 kb on - strand, within Atu0944at 933.213 kb on + strandat 933.226 kb on - strandat 933.313 kb on + strandat 933.375 kb on - strandat 933.440 kb on - strandat 933.690 kb on - strandat 933.956 kb on - strand, within Atu0945at 933.999 kb on + strand, within Atu0945at 934.007 kb on - strand, within Atu0945at 934.007 kb on - strand, within Atu0945at 934.007 kb on - strand, within Atu0945at 934.007 kb on - strand, within Atu0945at 934.007 kb on - strand, within Atu0945at 934.124 kb on + strand, within Atu0945at 934.124 kb on + strand, within Atu0945at 934.132 kb on - strand, within Atu0945at 934.140 kb on + strand, within Atu0945at 934.153 kb on - strand, within Atu0945at 934.154 kb on - strand, within Atu0945at 934.154 kb on - strand, within Atu0945at 934.279 kb on + strand, within Atu0945at 934.343 kb on - strand, within Atu0945at 934.343 kb on - strand, within Atu0945at 934.355 kb on - strand, within Atu0945at 934.469 kb on + strand, within Atu0945at 934.578 kb on - strand, within Atu0945at 934.698 kb on - strand, within Atu0945at 934.727 kb on - strand, within Atu0945at 934.835 kb on - strand, within Atu0945at 934.923 kb on + strand, within Atu0945at 934.952 kb on - strandat 935.025 kb on - strandat 935.039 kb on - strandat 935.169 kb on - strandat 935.173 kb on + strandat 935.173 kb on + strandat 935.230 kb on + strandat 935.257 kb on + strandat 935.276 kb on - strandat 935.276 kb on - strandat 935.366 kb on + strand, within Atu0946at 935.374 kb on - strand, within Atu0946at 935.374 kb on - strand, within Atu0946at 935.399 kb on + strand, within Atu0946at 935.529 kb on + strand, within Atu0946at 935.529 kb on + strand, within Atu0946at 935.537 kb on - strand, within Atu0946at 935.628 kb on + strand, within Atu0946at 935.970 kb on + strand, within Atu0946at 935.973 kb on - strand, within Atu0946at 936.014 kb on + strand, within Atu0946at 936.014 kb on + strand, within Atu0946at 936.022 kb on - strand, within Atu0946at 936.050 kb on - strand, within Atu0946at 936.060 kb on - strand, within Atu0946

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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932,695 + Atu0944 0.59 -0.2
932,735 - Atu0944 0.61 +0.1
932,742 + Atu0944 0.62 -0.2
932,750 - Atu0944 0.62 -0.3
932,750 - Atu0944 0.62 -0.3
932,752 + Atu0944 0.62 -0.2
932,760 - Atu0944 0.63 -1.1
932,796 - Atu0944 0.65 -0.3
932,838 - Atu0944 0.68 +0.2
932,855 + Atu0944 0.69 +0.2
932,903 - Atu0944 0.72 +0.7
932,905 - Atu0944 0.72 +0.8
932,932 - Atu0944 0.73 +0.9
932,982 + Atu0944 0.76 -0.4
933,030 - Atu0944 0.79 +0.0
933,058 - Atu0944 0.81 +0.4
933,117 + Atu0944 0.85 +0.1
933,130 - Atu0944 0.85 +0.2
933,171 - Atu0944 0.88 -0.0
933,213 + +0.2
933,226 - +0.3
933,313 + +0.5
933,375 - +0.5
933,440 - +0.2
933,690 - +0.8
933,956 - Atu0945 0.23 -0.2
933,999 + Atu0945 0.26 +0.1
934,007 - Atu0945 0.26 -0.1
934,007 - Atu0945 0.26 -0.1
934,007 - Atu0945 0.26 -0.2
934,007 - Atu0945 0.26 -0.1
934,007 - Atu0945 0.26 +0.3
934,124 + Atu0945 0.34 +0.5
934,124 + Atu0945 0.34 +0.2
934,132 - Atu0945 0.35 -0.2
934,140 + Atu0945 0.35 +1.5
934,153 - Atu0945 0.36 +0.0
934,154 - Atu0945 0.36 -0.2
934,154 - Atu0945 0.36 -0.1
934,279 + Atu0945 0.45 +1.1
934,343 - Atu0945 0.49 -0.1
934,343 - Atu0945 0.49 +0.3
934,355 - Atu0945 0.50 +0.2
934,469 + Atu0945 0.58 +0.7
934,578 - Atu0945 0.65 -0.4
934,698 - Atu0945 0.73 +0.4
934,727 - Atu0945 0.75 +0.3
934,835 - Atu0945 0.83 +0.1
934,923 + Atu0945 0.89 -0.0
934,952 - +0.4
935,025 - +0.1
935,039 - +0.7
935,169 - +0.3
935,173 + +0.3
935,173 + -0.7
935,230 + -0.4
935,257 + -1.7
935,276 - -0.8
935,276 - -0.5
935,366 + Atu0946 0.12 -1.7
935,374 - Atu0946 0.12 -2.7
935,374 - Atu0946 0.12 -2.3
935,399 + Atu0946 0.15 -2.7
935,529 + Atu0946 0.27 -3.2
935,529 + Atu0946 0.27 -3.2
935,537 - Atu0946 0.27 -2.5
935,628 + Atu0946 0.36 -2.5
935,970 + Atu0946 0.67 -2.3
935,973 - Atu0946 0.67 -1.1
936,014 + Atu0946 0.71 -2.5
936,014 + Atu0946 0.71 -2.0
936,022 - Atu0946 0.71 -3.3
936,050 - Atu0946 0.74 -3.0
936,060 - Atu0946 0.75 -2.6

Or see this region's nucleotide sequence