Strain Fitness in Pseudomonas sp. RS175 around PFR28_00812

Experiment: p-Coumaric (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00811 and PFR28_00812 are separated by 260 nucleotidesPFR28_00812 and PFR28_00813 overlap by 19 nucleotides PFR28_00811: PFR28_00811 - hypothetical protein, at 880,506 to 884,078 _00811 PFR28_00812: PFR28_00812 - Glucose-1-phosphate cytidylyltransferase, at 884,339 to 885,112 _00812 PFR28_00813: PFR28_00813 - CDP-glucose 4,6-dehydratase, at 885,094 to 886,176 _00813 Position (kb) 884 885 886Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 883.348 kb on - strand, within PFR28_00811at 883.348 kb on - strand, within PFR28_00811at 883.348 kb on - strand, within PFR28_00811at 883.374 kb on - strand, within PFR28_00811at 883.444 kb on + strand, within PFR28_00811at 883.444 kb on + strand, within PFR28_00811at 883.445 kb on - strand, within PFR28_00811at 883.484 kb on + strand, within PFR28_00811at 883.484 kb on + strand, within PFR28_00811at 883.485 kb on - strand, within PFR28_00811at 883.485 kb on - strand, within PFR28_00811at 883.485 kb on - strand, within PFR28_00811at 883.514 kb on + strand, within PFR28_00811at 883.514 kb on + strand, within PFR28_00811at 883.514 kb on + strand, within PFR28_00811at 883.514 kb on + strand, within PFR28_00811at 883.514 kb on + strand, within PFR28_00811at 883.515 kb on - strand, within PFR28_00811at 883.515 kb on - strand, within PFR28_00811at 883.515 kb on - strand, within PFR28_00811at 883.515 kb on - strand, within PFR28_00811at 883.515 kb on - strand, within PFR28_00811at 883.701 kb on + strand, within PFR28_00811at 883.701 kb on + strand, within PFR28_00811at 883.701 kb on + strand, within PFR28_00811at 883.701 kb on + strand, within PFR28_00811at 883.702 kb on - strand, within PFR28_00811at 883.740 kb on + strandat 883.800 kb on - strandat 883.840 kb on - strandat 883.884 kb on + strandat 883.884 kb on + strandat 883.884 kb on + strandat 883.904 kb on + strandat 883.904 kb on + strandat 883.904 kb on + strandat 883.904 kb on + strandat 883.905 kb on - strandat 883.905 kb on - strandat 883.905 kb on - strandat 883.912 kb on + strandat 883.912 kb on + strandat 883.912 kb on + strandat 883.912 kb on + strandat 883.912 kb on + strandat 883.912 kb on + strandat 883.912 kb on + strandat 883.913 kb on - strandat 883.913 kb on - strandat 884.049 kb on + strandat 884.050 kb on - strandat 884.085 kb on + strandat 884.086 kb on - strandat 884.132 kb on + strandat 884.132 kb on + strandat 884.132 kb on + strandat 884.132 kb on + strandat 884.132 kb on + strandat 884.133 kb on - strandat 884.133 kb on - strandat 884.133 kb on - strandat 884.133 kb on - strandat 884.133 kb on - strandat 884.133 kb on - strandat 884.133 kb on - strandat 884.213 kb on + strandat 884.273 kb on + strandat 884.274 kb on - strandat 884.274 kb on - strandat 884.274 kb on - strandat 884.274 kb on - strandat 884.350 kb on + strandat 884.350 kb on + strandat 884.350 kb on + strandat 884.351 kb on - strandat 884.351 kb on - strandat 884.351 kb on - strandat 884.459 kb on + strand, within PFR28_00812at 884.459 kb on + strand, within PFR28_00812at 884.459 kb on + strand, within PFR28_00812at 884.460 kb on - strand, within PFR28_00812at 884.460 kb on - strand, within PFR28_00812at 884.490 kb on + strand, within PFR28_00812at 884.490 kb on + strand, within PFR28_00812at 884.490 kb on + strand, within PFR28_00812at 884.490 kb on + strand, within PFR28_00812at 884.490 kb on + strand, within PFR28_00812at 884.490 kb on + strand, within PFR28_00812at 884.510 kb on + strand, within PFR28_00812at 884.537 kb on + strand, within PFR28_00812at 884.537 kb on + strand, within PFR28_00812at 884.537 kb on + strand, within PFR28_00812at 884.537 kb on + strand, within PFR28_00812at 884.537 kb on + strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.538 kb on - strand, within PFR28_00812at 884.603 kb on + strand, within PFR28_00812at 884.603 kb on + strand, within PFR28_00812at 884.603 kb on + strand, within PFR28_00812at 884.603 kb on + strand, within PFR28_00812at 884.603 kb on + strand, within PFR28_00812at 884.604 kb on - strand, within PFR28_00812at 884.604 kb on - strand, within PFR28_00812at 884.604 kb on - strand, within PFR28_00812at 884.684 kb on + strand, within PFR28_00812at 884.717 kb on + strand, within PFR28_00812at 884.718 kb on - strand, within PFR28_00812at 884.718 kb on - strand, within PFR28_00812at 884.933 kb on + strand, within PFR28_00812at 884.933 kb on + strand, within PFR28_00812at 884.933 kb on + strand, within PFR28_00812at 884.934 kb on - strand, within PFR28_00812at 884.934 kb on - strand, within PFR28_00812at 884.934 kb on - strand, within PFR28_00812at 884.934 kb on - strand, within PFR28_00812at 884.934 kb on - strand, within PFR28_00812at 884.934 kb on - strand, within PFR28_00812at 885.053 kb on - strandat 885.157 kb on - strandat 885.157 kb on - strandat 885.411 kb on + strand, within PFR28_00813at 885.412 kb on - strand, within PFR28_00813at 885.412 kb on - strand, within PFR28_00813at 885.412 kb on - strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.415 kb on + strand, within PFR28_00813at 885.416 kb on - strand, within PFR28_00813at 885.416 kb on - strand, within PFR28_00813at 885.416 kb on - strand, within PFR28_00813at 885.416 kb on - strand, within PFR28_00813at 885.416 kb on - strand, within PFR28_00813at 885.416 kb on - strand, within PFR28_00813at 885.456 kb on + strand, within PFR28_00813at 885.456 kb on + strand, within PFR28_00813at 885.456 kb on + strand, within PFR28_00813at 885.457 kb on - strand, within PFR28_00813at 885.457 kb on - strand, within PFR28_00813at 885.457 kb on - strand, within PFR28_00813at 885.512 kb on - strand, within PFR28_00813at 885.539 kb on - strand, within PFR28_00813at 885.575 kb on - strand, within PFR28_00813at 885.576 kb on + strand, within PFR28_00813at 885.576 kb on + strand, within PFR28_00813at 885.576 kb on + strand, within PFR28_00813at 885.577 kb on - strand, within PFR28_00813at 885.577 kb on - strand, within PFR28_00813at 885.577 kb on - strand, within PFR28_00813at 885.577 kb on - strand, within PFR28_00813at 885.577 kb on - strand, within PFR28_00813at 885.577 kb on - strand, within PFR28_00813at 885.616 kb on + strand, within PFR28_00813at 885.617 kb on - strand, within PFR28_00813at 885.830 kb on - strand, within PFR28_00813

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C) 2.5 mM
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883,348 - PFR28_00811 0.80 +1.1
883,348 - PFR28_00811 0.80 +0.2
883,348 - PFR28_00811 0.80 +0.2
883,374 - PFR28_00811 0.80 +2.7
883,444 + PFR28_00811 0.82 -0.1
883,444 + PFR28_00811 0.82 +1.1
883,445 - PFR28_00811 0.82 -0.5
883,484 + PFR28_00811 0.83 +0.5
883,484 + PFR28_00811 0.83 -0.0
883,485 - PFR28_00811 0.83 -0.9
883,485 - PFR28_00811 0.83 +0.3
883,485 - PFR28_00811 0.83 -0.6
883,514 + PFR28_00811 0.84 +1.0
883,514 + PFR28_00811 0.84 -0.2
883,514 + PFR28_00811 0.84 +1.2
883,514 + PFR28_00811 0.84 -1.0
883,514 + PFR28_00811 0.84 +1.9
883,515 - PFR28_00811 0.84 -0.0
883,515 - PFR28_00811 0.84 -0.5
883,515 - PFR28_00811 0.84 -1.0
883,515 - PFR28_00811 0.84 -0.1
883,515 - PFR28_00811 0.84 -0.3
883,701 + PFR28_00811 0.89 +0.9
883,701 + PFR28_00811 0.89 -0.1
883,701 + PFR28_00811 0.89 -0.1
883,701 + PFR28_00811 0.89 -0.7
883,702 - PFR28_00811 0.89 -1.3
883,740 + +1.7
883,800 - -0.2
883,840 - -0.8
883,884 + -0.2
883,884 + +0.7
883,884 + -0.3
883,904 + +0.8
883,904 + +0.0
883,904 + -0.1
883,904 + -0.9
883,905 - +0.9
883,905 - +2.7
883,905 - +0.9
883,912 + -0.1
883,912 + +0.6
883,912 + +1.8
883,912 + +0.8
883,912 + +0.3
883,912 + -1.6
883,912 + +0.9
883,913 - -0.5
883,913 - +2.1
884,049 + -0.9
884,050 - +3.1
884,085 + +0.5
884,086 - -1.5
884,132 + +0.3
884,132 + +0.7
884,132 + +1.1
884,132 + -1.1
884,132 + -0.8
884,133 - -0.1
884,133 - -0.3
884,133 - -0.4
884,133 - -0.4
884,133 - -0.5
884,133 - -0.2
884,133 - -0.6
884,213 + +1.1
884,273 + +0.4
884,274 - -2.0
884,274 - -2.3
884,274 - -3.0
884,274 - -1.8
884,350 + -0.9
884,350 + -1.3
884,350 + +0.2
884,351 - +0.2
884,351 - -0.5
884,351 - -0.3
884,459 + PFR28_00812 0.16 -2.9
884,459 + PFR28_00812 0.16 -1.0
884,459 + PFR28_00812 0.16 -1.5
884,460 - PFR28_00812 0.16 -0.8
884,460 - PFR28_00812 0.16 -2.1
884,490 + PFR28_00812 0.20 +0.3
884,490 + PFR28_00812 0.20 +0.3
884,490 + PFR28_00812 0.20 +0.3
884,490 + PFR28_00812 0.20 +0.6
884,490 + PFR28_00812 0.20 +0.2
884,490 + PFR28_00812 0.20 +0.6
884,510 + PFR28_00812 0.22 +0.3
884,537 + PFR28_00812 0.26 -0.2
884,537 + PFR28_00812 0.26 -0.5
884,537 + PFR28_00812 0.26 +1.5
884,537 + PFR28_00812 0.26 -1.2
884,537 + PFR28_00812 0.26 -0.4
884,538 - PFR28_00812 0.26 -2.1
884,538 - PFR28_00812 0.26 -0.9
884,538 - PFR28_00812 0.26 -2.0
884,538 - PFR28_00812 0.26 -0.6
884,538 - PFR28_00812 0.26 -2.1
884,538 - PFR28_00812 0.26 -2.0
884,538 - PFR28_00812 0.26 -1.1
884,538 - PFR28_00812 0.26 -1.5
884,538 - PFR28_00812 0.26 -1.5
884,538 - PFR28_00812 0.26 -1.8
884,603 + PFR28_00812 0.34 -0.3
884,603 + PFR28_00812 0.34 -0.1
884,603 + PFR28_00812 0.34 -1.1
884,603 + PFR28_00812 0.34 +1.5
884,603 + PFR28_00812 0.34 +1.3
884,604 - PFR28_00812 0.34 -1.5
884,604 - PFR28_00812 0.34 -1.8
884,604 - PFR28_00812 0.34 -1.5
884,684 + PFR28_00812 0.45 -1.2
884,717 + PFR28_00812 0.49 -0.4
884,718 - PFR28_00812 0.49 -0.8
884,718 - PFR28_00812 0.49 -2.0
884,933 + PFR28_00812 0.77 -0.6
884,933 + PFR28_00812 0.77 -0.6
884,933 + PFR28_00812 0.77 -0.6
884,934 - PFR28_00812 0.77 -2.4
884,934 - PFR28_00812 0.77 -1.5
884,934 - PFR28_00812 0.77 -2.1
884,934 - PFR28_00812 0.77 -1.9
884,934 - PFR28_00812 0.77 -2.7
884,934 - PFR28_00812 0.77 -1.4
885,053 - -0.3
885,157 - +0.0
885,157 - -1.1
885,411 + PFR28_00813 0.29 -0.1
885,412 - PFR28_00813 0.29 -0.3
885,412 - PFR28_00813 0.29 -0.1
885,412 - PFR28_00813 0.29 -0.5
885,415 + PFR28_00813 0.30 +0.6
885,415 + PFR28_00813 0.30 -0.5
885,415 + PFR28_00813 0.30 -2.1
885,415 + PFR28_00813 0.30 -0.1
885,415 + PFR28_00813 0.30 -0.2
885,415 + PFR28_00813 0.30 -0.4
885,415 + PFR28_00813 0.30 -2.3
885,415 + PFR28_00813 0.30 +0.1
885,415 + PFR28_00813 0.30 +0.3
885,415 + PFR28_00813 0.30 -0.6
885,415 + PFR28_00813 0.30 -0.9
885,415 + PFR28_00813 0.30 -0.9
885,415 + PFR28_00813 0.30 -1.0
885,415 + PFR28_00813 0.30 +0.0
885,416 - PFR28_00813 0.30 -1.4
885,416 - PFR28_00813 0.30 -1.9
885,416 - PFR28_00813 0.30 -2.4
885,416 - PFR28_00813 0.30 -1.4
885,416 - PFR28_00813 0.30 -2.3
885,416 - PFR28_00813 0.30 -2.3
885,456 + PFR28_00813 0.33 -1.5
885,456 + PFR28_00813 0.33 -0.6
885,456 + PFR28_00813 0.33 -0.3
885,457 - PFR28_00813 0.34 -1.6
885,457 - PFR28_00813 0.34 -0.9
885,457 - PFR28_00813 0.34 -1.5
885,512 - PFR28_00813 0.39 -4.0
885,539 - PFR28_00813 0.41 -1.4
885,575 - PFR28_00813 0.44 -3.0
885,576 + PFR28_00813 0.45 -0.3
885,576 + PFR28_00813 0.45 -0.3
885,576 + PFR28_00813 0.45 +0.7
885,577 - PFR28_00813 0.45 -1.0
885,577 - PFR28_00813 0.45 -0.9
885,577 - PFR28_00813 0.45 +0.9
885,577 - PFR28_00813 0.45 -0.5
885,577 - PFR28_00813 0.45 -0.3
885,577 - PFR28_00813 0.45 -0.6
885,616 + PFR28_00813 0.48 -0.9
885,617 - PFR28_00813 0.48 -2.7
885,830 - PFR28_00813 0.68 +1.1

Or see this region's nucleotide sequence