Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3511

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3510 and Echvi_3511 are separated by 3 nucleotidesEchvi_3511 and Echvi_3512 are separated by 97 nucleotidesEchvi_3512 and Echvi_3513 are separated by 33 nucleotides Echvi_3510: Echvi_3510 - Site-specific recombinase XerD, at 4,160,405 to 4,161,547 _3510 Echvi_3511: Echvi_3511 - hypothetical protein, at 4,161,551 to 4,162,408 _3511 Echvi_3512: Echvi_3512 - DNA binding domain, excisionase family, at 4,162,506 to 4,162,784 _3512 Echvi_3513: Echvi_3513 - Predicted P-loop ATPase and inactivated derivatives, at 4,162,818 to 4,164,032 _3513 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4160.563 kb on + strand, within Echvi_3510at 4160.663 kb on - strand, within Echvi_3510at 4160.663 kb on - strand, within Echvi_3510at 4160.664 kb on + strand, within Echvi_3510at 4160.665 kb on - strand, within Echvi_3510at 4160.665 kb on - strand, within Echvi_3510at 4160.697 kb on - strand, within Echvi_3510at 4160.697 kb on - strand, within Echvi_3510at 4160.697 kb on - strand, within Echvi_3510at 4160.697 kb on - strand, within Echvi_3510at 4160.697 kb on - strand, within Echvi_3510at 4160.697 kb on - strand, within Echvi_3510at 4160.739 kb on - strand, within Echvi_3510at 4160.739 kb on - strand, within Echvi_3510at 4160.815 kb on + strand, within Echvi_3510at 4160.822 kb on - strand, within Echvi_3510at 4160.822 kb on - strand, within Echvi_3510at 4160.897 kb on + strand, within Echvi_3510at 4160.951 kb on + strand, within Echvi_3510at 4160.951 kb on + strand, within Echvi_3510at 4160.952 kb on - strand, within Echvi_3510at 4160.956 kb on - strand, within Echvi_3510at 4160.967 kb on - strand, within Echvi_3510at 4161.014 kb on + strandat 4161.014 kb on + strand, within Echvi_3510at 4161.033 kb on + strand, within Echvi_3510at 4161.058 kb on + strand, within Echvi_3510at 4161.058 kb on + strand, within Echvi_3510at 4161.062 kb on + strand, within Echvi_3510at 4161.109 kb on + strand, within Echvi_3510at 4161.109 kb on + strand, within Echvi_3510at 4161.109 kb on + strand, within Echvi_3510at 4161.110 kb on - strand, within Echvi_3510at 4161.134 kb on - strand, within Echvi_3510at 4161.134 kb on - strand, within Echvi_3510at 4161.134 kb on - strand, within Echvi_3510at 4161.134 kb on - strand, within Echvi_3510at 4161.134 kb on - strand, within Echvi_3510at 4161.163 kb on + strand, within Echvi_3510at 4161.212 kb on + strand, within Echvi_3510at 4161.213 kb on - strand, within Echvi_3510at 4161.216 kb on + strand, within Echvi_3510at 4161.216 kb on + strand, within Echvi_3510at 4161.217 kb on - strand, within Echvi_3510at 4161.217 kb on - strand, within Echvi_3510at 4161.217 kb on - strand, within Echvi_3510at 4161.218 kb on + strand, within Echvi_3510at 4161.281 kb on + strand, within Echvi_3510at 4161.289 kb on + strand, within Echvi_3510at 4161.293 kb on + strand, within Echvi_3510at 4161.293 kb on + strand, within Echvi_3510at 4161.294 kb on - strand, within Echvi_3510at 4161.306 kb on - strand, within Echvi_3510at 4161.306 kb on - strand, within Echvi_3510at 4161.308 kb on - strand, within Echvi_3510at 4161.310 kb on + strand, within Echvi_3510at 4161.417 kb on + strand, within Echvi_3510at 4161.418 kb on - strand, within Echvi_3510at 4161.418 kb on - strand, within Echvi_3510at 4161.438 kb on + strandat 4161.445 kb on + strandat 4161.446 kb on - strandat 4161.446 kb on - strandat 4161.446 kb on - strandat 4161.470 kb on + strandat 4161.475 kb on + strandat 4161.511 kb on + strandat 4161.512 kb on - strandat 4161.513 kb on + strandat 4161.514 kb on - strandat 4161.514 kb on - strandat 4161.531 kb on + strandat 4161.545 kb on + strandat 4161.545 kb on + strandat 4161.580 kb on - strandat 4161.597 kb on + strandat 4161.597 kb on + strandat 4161.615 kb on - strandat 4161.625 kb on - strandat 4161.628 kb on + strandat 4161.635 kb on + strandat 4161.647 kb on - strand, within Echvi_3511at 4161.655 kb on + strand, within Echvi_3511at 4161.656 kb on - strand, within Echvi_3511at 4161.656 kb on - strand, within Echvi_3511at 4161.659 kb on + strand, within Echvi_3511at 4161.696 kb on - strand, within Echvi_3511at 4161.701 kb on - strand, within Echvi_3511at 4161.744 kb on - strand, within Echvi_3511at 4161.744 kb on - strand, within Echvi_3511at 4161.745 kb on + strand, within Echvi_3511at 4161.745 kb on + strand, within Echvi_3511at 4161.745 kb on + strand, within Echvi_3511at 4161.745 kb on + strand, within Echvi_3511at 4161.746 kb on - strand, within Echvi_3511at 4161.746 kb on - strand, within Echvi_3511at 4161.746 kb on - strand, within Echvi_3511at 4161.746 kb on - strand, within Echvi_3511at 4161.751 kb on + strand, within Echvi_3511at 4161.887 kb on - strand, within Echvi_3511at 4161.887 kb on - strand, within Echvi_3511at 4161.887 kb on - strand, within Echvi_3511at 4161.888 kb on + strand, within Echvi_3511at 4161.888 kb on + strand, within Echvi_3511at 4161.888 kb on + strand, within Echvi_3511at 4161.888 kb on + strand, within Echvi_3511at 4161.889 kb on - strand, within Echvi_3511at 4161.889 kb on - strand, within Echvi_3511at 4161.889 kb on - strand, within Echvi_3511at 4161.889 kb on - strand, within Echvi_3511at 4161.889 kb on - strand, within Echvi_3511at 4161.919 kb on + strand, within Echvi_3511at 4162.009 kb on + strand, within Echvi_3511at 4162.094 kb on + strand, within Echvi_3511at 4162.181 kb on - strand, within Echvi_3511at 4162.181 kb on - strand, within Echvi_3511at 4162.212 kb on - strand, within Echvi_3511at 4162.235 kb on + strand, within Echvi_3511at 4162.235 kb on + strand, within Echvi_3511at 4162.235 kb on + strand, within Echvi_3511at 4162.236 kb on - strand, within Echvi_3511at 4162.236 kb on - strand, within Echvi_3511at 4162.236 kb on - strand, within Echvi_3511at 4162.236 kb on - strand, within Echvi_3511at 4162.236 kb on - strand, within Echvi_3511at 4162.236 kb on - strand, within Echvi_3511at 4162.243 kb on + strand, within Echvi_3511at 4162.244 kb on - strand, within Echvi_3511at 4162.313 kb on + strand, within Echvi_3511at 4162.333 kb on + strandat 4162.333 kb on + strandat 4162.334 kb on - strandat 4162.334 kb on - strandat 4162.340 kb on + strandat 4162.358 kb on + strandat 4162.359 kb on - strandat 4162.359 kb on - strandat 4162.361 kb on - strandat 4162.401 kb on + strandat 4162.401 kb on + strandat 4162.401 kb on + strandat 4162.402 kb on - strandat 4162.402 kb on - strandat 4162.402 kb on - strandat 4162.467 kb on + strandat 4162.520 kb on + strandat 4162.553 kb on + strand, within Echvi_3512at 4162.582 kb on + strand, within Echvi_3512at 4162.600 kb on - strand, within Echvi_3512at 4162.730 kb on + strand, within Echvi_3512at 4162.873 kb on + strandat 4162.874 kb on - strandat 4162.874 kb on - strandat 4162.877 kb on + strandat 4162.878 kb on - strandat 4162.878 kb on - strandat 4162.878 kb on - strandat 4162.917 kb on - strandat 4162.917 kb on - strandat 4162.986 kb on - strand, within Echvi_3513at 4162.992 kb on + strand, within Echvi_3513at 4162.992 kb on + strand, within Echvi_3513at 4162.992 kb on + strand, within Echvi_3513at 4162.993 kb on - strand, within Echvi_3513at 4162.993 kb on - strand, within Echvi_3513at 4162.996 kb on + strand, within Echvi_3513at 4162.996 kb on + strand, within Echvi_3513at 4162.996 kb on + strand, within Echvi_3513at 4162.996 kb on + strand, within Echvi_3513at 4162.997 kb on - strand, within Echvi_3513at 4162.997 kb on - strand, within Echvi_3513at 4162.997 kb on - strand, within Echvi_3513at 4162.997 kb on - strand, within Echvi_3513at 4162.997 kb on - strand, within Echvi_3513at 4162.997 kb on - strand, within Echvi_3513at 4163.038 kb on + strand, within Echvi_3513at 4163.039 kb on - strand, within Echvi_3513at 4163.061 kb on + strand, within Echvi_3513at 4163.061 kb on + strand, within Echvi_3513at 4163.062 kb on - strand, within Echvi_3513at 4163.062 kb on - strand, within Echvi_3513at 4163.064 kb on - strand, within Echvi_3513at 4163.091 kb on + strand, within Echvi_3513at 4163.092 kb on - strand, within Echvi_3513at 4163.092 kb on - strand, within Echvi_3513at 4163.113 kb on + strand, within Echvi_3513at 4163.139 kb on + strand, within Echvi_3513at 4163.139 kb on + strand, within Echvi_3513at 4163.139 kb on + strand, within Echvi_3513at 4163.140 kb on - strand, within Echvi_3513at 4163.141 kb on + strand, within Echvi_3513at 4163.141 kb on + strand, within Echvi_3513at 4163.142 kb on - strand, within Echvi_3513at 4163.160 kb on + strand, within Echvi_3513at 4163.160 kb on + strand, within Echvi_3513at 4163.160 kb on + strand, within Echvi_3513at 4163.160 kb on + strand, within Echvi_3513at 4163.160 kb on + strand, within Echvi_3513at 4163.160 kb on + strand, within Echvi_3513at 4163.161 kb on - strand, within Echvi_3513at 4163.161 kb on - strand, within Echvi_3513at 4163.161 kb on - strand, within Echvi_3513at 4163.161 kb on - strand, within Echvi_3513at 4163.163 kb on - strand, within Echvi_3513at 4163.190 kb on - strand, within Echvi_3513at 4163.195 kb on - strand, within Echvi_3513at 4163.195 kb on - strand, within Echvi_3513at 4163.195 kb on - strand, within Echvi_3513at 4163.234 kb on + strand, within Echvi_3513at 4163.234 kb on + strand, within Echvi_3513at 4163.234 kb on + strand, within Echvi_3513at 4163.235 kb on - strand, within Echvi_3513at 4163.236 kb on + strand, within Echvi_3513at 4163.237 kb on - strand, within Echvi_3513at 4163.237 kb on - strand, within Echvi_3513at 4163.247 kb on + strand, within Echvi_3513at 4163.248 kb on - strand, within Echvi_3513at 4163.250 kb on + strand, within Echvi_3513at 4163.251 kb on - strand, within Echvi_3513at 4163.251 kb on - strand, within Echvi_3513at 4163.343 kb on + strand, within Echvi_3513at 4163.343 kb on + strand, within Echvi_3513at 4163.344 kb on - strand, within Echvi_3513at 4163.346 kb on + strand, within Echvi_3513at 4163.346 kb on + strand, within Echvi_3513at 4163.346 kb on + strand, within Echvi_3513at 4163.347 kb on - strand, within Echvi_3513at 4163.358 kb on - strand, within Echvi_3513

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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4,160,563 + Echvi_3510 0.14 +2.1
4,160,663 - Echvi_3510 0.23 -0.8
4,160,663 - Echvi_3510 0.23 -2.4
4,160,664 + Echvi_3510 0.23 -0.5
4,160,665 - Echvi_3510 0.23 -0.4
4,160,665 - Echvi_3510 0.23 +0.3
4,160,697 - Echvi_3510 0.26 -1.2
4,160,697 - Echvi_3510 0.26 -1.0
4,160,697 - Echvi_3510 0.26 +3.1
4,160,697 - Echvi_3510 0.26 -0.1
4,160,697 - Echvi_3510 0.26 +1.5
4,160,697 - Echvi_3510 0.26 +0.6
4,160,739 - Echvi_3510 0.29 -0.9
4,160,739 - Echvi_3510 0.29 +0.2
4,160,815 + Echvi_3510 0.36 +2.5
4,160,822 - Echvi_3510 0.36 +1.1
4,160,822 - Echvi_3510 0.36 +0.1
4,160,897 + Echvi_3510 0.43 +0.2
4,160,951 + Echvi_3510 0.48 +0.3
4,160,951 + Echvi_3510 0.48 +0.7
4,160,952 - Echvi_3510 0.48 +0.4
4,160,956 - Echvi_3510 0.48 -1.3
4,160,967 - Echvi_3510 0.49 +0.9
4,161,014 + +1.5
4,161,014 + Echvi_3510 0.53 -0.8
4,161,033 + Echvi_3510 0.55 -2.2
4,161,058 + Echvi_3510 0.57 +0.1
4,161,058 + Echvi_3510 0.57 +0.3
4,161,062 + Echvi_3510 0.57 +0.5
4,161,109 + Echvi_3510 0.62 +1.3
4,161,109 + Echvi_3510 0.62 -1.0
4,161,109 + Echvi_3510 0.62 -0.7
4,161,110 - Echvi_3510 0.62 -0.7
4,161,134 - Echvi_3510 0.64 -0.7
4,161,134 - Echvi_3510 0.64 +0.5
4,161,134 - Echvi_3510 0.64 +0.6
4,161,134 - Echvi_3510 0.64 -1.0
4,161,134 - Echvi_3510 0.64 -1.9
4,161,163 + Echvi_3510 0.66 +0.2
4,161,212 + Echvi_3510 0.71 +0.4
4,161,213 - Echvi_3510 0.71 -0.7
4,161,216 + Echvi_3510 0.71 +2.6
4,161,216 + Echvi_3510 0.71 -0.5
4,161,217 - Echvi_3510 0.71 -1.9
4,161,217 - Echvi_3510 0.71 -0.9
4,161,217 - Echvi_3510 0.71 +2.6
4,161,218 + Echvi_3510 0.71 -1.1
4,161,281 + Echvi_3510 0.77 +0.6
4,161,289 + Echvi_3510 0.77 -0.2
4,161,293 + Echvi_3510 0.78 -1.9
4,161,293 + Echvi_3510 0.78 -0.6
4,161,294 - Echvi_3510 0.78 +0.0
4,161,306 - Echvi_3510 0.79 -1.4
4,161,306 - Echvi_3510 0.79 +0.1
4,161,308 - Echvi_3510 0.79 -0.5
4,161,310 + Echvi_3510 0.79 -0.3
4,161,417 + Echvi_3510 0.89 +0.1
4,161,418 - Echvi_3510 0.89 -0.1
4,161,418 - Echvi_3510 0.89 +1.1
4,161,438 + +0.7
4,161,445 + +0.2
4,161,446 - +0.6
4,161,446 - +1.4
4,161,446 - +1.0
4,161,470 + +0.5
4,161,475 + -0.6
4,161,511 + +0.7
4,161,512 - -1.6
4,161,513 + +0.7
4,161,514 - +1.8
4,161,514 - +0.1
4,161,531 + -0.3
4,161,545 + -2.3
4,161,545 + -1.4
4,161,580 - +0.7
4,161,597 + -1.3
4,161,597 + +0.6
4,161,615 - +0.4
4,161,625 - +0.4
4,161,628 + -1.1
4,161,635 + -0.8
4,161,647 - Echvi_3511 0.11 -2.1
4,161,655 + Echvi_3511 0.12 +0.0
4,161,656 - Echvi_3511 0.12 +0.8
4,161,656 - Echvi_3511 0.12 -0.8
4,161,659 + Echvi_3511 0.13 +0.5
4,161,696 - Echvi_3511 0.17 +0.7
4,161,701 - Echvi_3511 0.17 -0.1
4,161,744 - Echvi_3511 0.22 -1.0
4,161,744 - Echvi_3511 0.22 -0.7
4,161,745 + Echvi_3511 0.23 -1.0
4,161,745 + Echvi_3511 0.23 -3.2
4,161,745 + Echvi_3511 0.23 -0.8
4,161,745 + Echvi_3511 0.23 -0.1
4,161,746 - Echvi_3511 0.23 +1.0
4,161,746 - Echvi_3511 0.23 -0.1
4,161,746 - Echvi_3511 0.23 -1.9
4,161,746 - Echvi_3511 0.23 +1.5
4,161,751 + Echvi_3511 0.23 +0.4
4,161,887 - Echvi_3511 0.39 -0.7
4,161,887 - Echvi_3511 0.39 +0.3
4,161,887 - Echvi_3511 0.39 +0.4
4,161,888 + Echvi_3511 0.39 -0.5
4,161,888 + Echvi_3511 0.39 -0.4
4,161,888 + Echvi_3511 0.39 -0.7
4,161,888 + Echvi_3511 0.39 +0.5
4,161,889 - Echvi_3511 0.39 -1.1
4,161,889 - Echvi_3511 0.39 +0.7
4,161,889 - Echvi_3511 0.39 -0.4
4,161,889 - Echvi_3511 0.39 -1.6
4,161,889 - Echvi_3511 0.39 -0.0
4,161,919 + Echvi_3511 0.43 +0.7
4,162,009 + Echvi_3511 0.53 -0.0
4,162,094 + Echvi_3511 0.63 -0.2
4,162,181 - Echvi_3511 0.73 -0.2
4,162,181 - Echvi_3511 0.73 +1.6
4,162,212 - Echvi_3511 0.77 -0.3
4,162,235 + Echvi_3511 0.80 -1.2
4,162,235 + Echvi_3511 0.80 -0.4
4,162,235 + Echvi_3511 0.80 +0.6
4,162,236 - Echvi_3511 0.80 +1.3
4,162,236 - Echvi_3511 0.80 +0.3
4,162,236 - Echvi_3511 0.80 -1.3
4,162,236 - Echvi_3511 0.80 +3.5
4,162,236 - Echvi_3511 0.80 -1.5
4,162,236 - Echvi_3511 0.80 +0.1
4,162,243 + Echvi_3511 0.81 +0.5
4,162,244 - Echvi_3511 0.81 +0.3
4,162,313 + Echvi_3511 0.89 +0.1
4,162,333 + -0.1
4,162,333 + +0.9
4,162,334 - -0.6
4,162,334 - +1.0
4,162,340 + -0.3
4,162,358 + +0.1
4,162,359 - -0.3
4,162,359 - +0.3
4,162,361 - -2.2
4,162,401 + -0.6
4,162,401 + +0.7
4,162,401 + -0.7
4,162,402 - -0.4
4,162,402 - +2.1
4,162,402 - +4.9
4,162,467 + +0.7
4,162,520 + -1.3
4,162,553 + Echvi_3512 0.17 +0.1
4,162,582 + Echvi_3512 0.27 +1.1
4,162,600 - Echvi_3512 0.34 -2.2
4,162,730 + Echvi_3512 0.80 +1.1
4,162,873 + -0.3
4,162,874 - -0.6
4,162,874 - +2.1
4,162,877 + +0.2
4,162,878 - -2.1
4,162,878 - +0.3
4,162,878 - +0.8
4,162,917 - -0.8
4,162,917 - -0.6
4,162,986 - Echvi_3513 0.14 -1.1
4,162,992 + Echvi_3513 0.14 +1.5
4,162,992 + Echvi_3513 0.14 -0.4
4,162,992 + Echvi_3513 0.14 -0.6
4,162,993 - Echvi_3513 0.14 +0.6
4,162,993 - Echvi_3513 0.14 +1.3
4,162,996 + Echvi_3513 0.15 -1.2
4,162,996 + Echvi_3513 0.15 +1.4
4,162,996 + Echvi_3513 0.15 -1.7
4,162,996 + Echvi_3513 0.15 +0.0
4,162,997 - Echvi_3513 0.15 -1.6
4,162,997 - Echvi_3513 0.15 +0.9
4,162,997 - Echvi_3513 0.15 +1.7
4,162,997 - Echvi_3513 0.15 +1.8
4,162,997 - Echvi_3513 0.15 -2.5
4,162,997 - Echvi_3513 0.15 -0.4
4,163,038 + Echvi_3513 0.18 -1.3
4,163,039 - Echvi_3513 0.18 +0.4
4,163,061 + Echvi_3513 0.20 -0.4
4,163,061 + Echvi_3513 0.20 +1.1
4,163,062 - Echvi_3513 0.20 +0.7
4,163,062 - Echvi_3513 0.20 +0.6
4,163,064 - Echvi_3513 0.20 +0.6
4,163,091 + Echvi_3513 0.22 -2.4
4,163,092 - Echvi_3513 0.23 -1.1
4,163,092 - Echvi_3513 0.23 -0.7
4,163,113 + Echvi_3513 0.24 -0.1
4,163,139 + Echvi_3513 0.26 -0.3
4,163,139 + Echvi_3513 0.26 +1.5
4,163,139 + Echvi_3513 0.26 -0.3
4,163,140 - Echvi_3513 0.27 -0.5
4,163,141 + Echvi_3513 0.27 +0.3
4,163,141 + Echvi_3513 0.27 -0.5
4,163,142 - Echvi_3513 0.27 -0.4
4,163,160 + Echvi_3513 0.28 -1.5
4,163,160 + Echvi_3513 0.28 -0.1
4,163,160 + Echvi_3513 0.28 -0.0
4,163,160 + Echvi_3513 0.28 +0.7
4,163,160 + Echvi_3513 0.28 +0.9
4,163,160 + Echvi_3513 0.28 +0.7
4,163,161 - Echvi_3513 0.28 +0.6
4,163,161 - Echvi_3513 0.28 +0.8
4,163,161 - Echvi_3513 0.28 +1.6
4,163,161 - Echvi_3513 0.28 -0.3
4,163,163 - Echvi_3513 0.28 +2.1
4,163,190 - Echvi_3513 0.31 -0.1
4,163,195 - Echvi_3513 0.31 +0.2
4,163,195 - Echvi_3513 0.31 +1.8
4,163,195 - Echvi_3513 0.31 -1.7
4,163,234 + Echvi_3513 0.34 +1.0
4,163,234 + Echvi_3513 0.34 -0.4
4,163,234 + Echvi_3513 0.34 +0.2
4,163,235 - Echvi_3513 0.34 +1.0
4,163,236 + Echvi_3513 0.34 -2.3
4,163,237 - Echvi_3513 0.34 +1.2
4,163,237 - Echvi_3513 0.34 +1.3
4,163,247 + Echvi_3513 0.35 -0.6
4,163,248 - Echvi_3513 0.35 +0.4
4,163,250 + Echvi_3513 0.36 -2.2
4,163,251 - Echvi_3513 0.36 -0.8
4,163,251 - Echvi_3513 0.36 +1.1
4,163,343 + Echvi_3513 0.43 +0.7
4,163,343 + Echvi_3513 0.43 +0.3
4,163,344 - Echvi_3513 0.43 -0.9
4,163,346 + Echvi_3513 0.43 +3.1
4,163,346 + Echvi_3513 0.43 +1.1
4,163,346 + Echvi_3513 0.43 -2.5
4,163,347 - Echvi_3513 0.44 -0.4
4,163,358 - Echvi_3513 0.44 -0.6

Or see this region's nucleotide sequence