Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0820

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0819 and Echvi_0820 are separated by 116 nucleotidesEchvi_0820 and Echvi_0821 are separated by 71 nucleotidesEchvi_0821 and Echvi_0822 are separated by 6 nucleotides Echvi_0819: Echvi_0819 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 937,141 to 937,662 _0819 Echvi_0820: Echvi_0820 - Membrane transporters of cations and cationic drugs, at 937,779 to 938,108 _0820 Echvi_0821: Echvi_0821 - Acetyltransferases, at 938,180 to 938,578 _0821 Echvi_0822: Echvi_0822 - Acetyltransferases, at 938,585 to 939,103 _0822 Position (kb) 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 936.906 kb on + strandat 936.907 kb on - strandat 936.907 kb on - strandat 936.907 kb on - strandat 936.947 kb on + strandat 936.979 kb on + strandat 936.979 kb on + strandat 936.984 kb on + strandat 937.002 kb on - strandat 937.002 kb on - strandat 937.012 kb on + strandat 937.012 kb on + strandat 937.020 kb on - strandat 937.053 kb on + strandat 937.071 kb on + strandat 937.072 kb on - strandat 937.087 kb on - strandat 937.087 kb on - strandat 937.091 kb on + strandat 937.149 kb on - strandat 937.226 kb on - strand, within Echvi_0819at 937.226 kb on - strand, within Echvi_0819at 937.241 kb on - strand, within Echvi_0819at 937.280 kb on - strand, within Echvi_0819at 937.306 kb on - strand, within Echvi_0819at 937.376 kb on + strand, within Echvi_0819at 937.387 kb on - strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.412 kb on - strand, within Echvi_0819at 937.412 kb on - strand, within Echvi_0819at 937.413 kb on + strand, within Echvi_0819at 937.414 kb on - strand, within Echvi_0819at 937.414 kb on - strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.422 kb on - strand, within Echvi_0819at 937.436 kb on + strand, within Echvi_0819at 937.585 kb on + strand, within Echvi_0819at 937.615 kb on + strandat 937.639 kb on + strandat 937.649 kb on + strandat 937.653 kb on + strandat 937.658 kb on - strandat 937.658 kb on - strandat 937.701 kb on - strandat 937.701 kb on - strandat 937.705 kb on - strandat 937.800 kb on - strandat 937.810 kb on + strandat 937.811 kb on - strandat 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.872 kb on + strand, within Echvi_0820at 937.873 kb on - strand, within Echvi_0820at 937.873 kb on - strand, within Echvi_0820at 937.873 kb on - strand, within Echvi_0820at 937.873 kb on - strand, within Echvi_0820at 937.873 kb on - strand, within Echvi_0820at 937.876 kb on + strand, within Echvi_0820at 937.877 kb on - strand, within Echvi_0820at 937.914 kb on - strand, within Echvi_0820at 937.921 kb on + strand, within Echvi_0820at 937.963 kb on - strand, within Echvi_0820at 938.015 kb on + strand, within Echvi_0820at 938.015 kb on + strand, within Echvi_0820at 938.015 kb on + strand, within Echvi_0820at 938.016 kb on - strand, within Echvi_0820at 938.018 kb on - strand, within Echvi_0820at 938.021 kb on + strand, within Echvi_0820at 938.021 kb on + strand, within Echvi_0820at 938.032 kb on + strand, within Echvi_0820at 938.068 kb on + strand, within Echvi_0820at 938.069 kb on - strand, within Echvi_0820at 938.069 kb on - strand, within Echvi_0820at 938.117 kb on - strandat 938.121 kb on - strandat 938.121 kb on - strandat 938.122 kb on + strandat 938.122 kb on + strandat 938.122 kb on + strandat 938.123 kb on - strandat 938.123 kb on - strandat 938.123 kb on - strandat 938.128 kb on + strandat 938.128 kb on + strandat 938.128 kb on + strandat 938.128 kb on + strandat 938.129 kb on - strandat 938.129 kb on - strandat 938.131 kb on - strandat 938.131 kb on - strandat 938.197 kb on - strandat 938.207 kb on + strandat 938.207 kb on + strandat 938.208 kb on - strandat 938.222 kb on - strand, within Echvi_0821at 938.239 kb on - strand, within Echvi_0821at 938.313 kb on + strand, within Echvi_0821at 938.317 kb on + strand, within Echvi_0821at 938.317 kb on + strand, within Echvi_0821at 938.317 kb on + strand, within Echvi_0821at 938.318 kb on - strand, within Echvi_0821at 938.318 kb on - strand, within Echvi_0821at 938.318 kb on - strand, within Echvi_0821at 938.323 kb on + strand, within Echvi_0821at 938.323 kb on + strand, within Echvi_0821at 938.323 kb on + strand, within Echvi_0821at 938.323 kb on + strand, within Echvi_0821at 938.324 kb on - strand, within Echvi_0821at 938.324 kb on - strand, within Echvi_0821at 938.324 kb on - strand, within Echvi_0821at 938.327 kb on + strand, within Echvi_0821at 938.327 kb on + strand, within Echvi_0821at 938.331 kb on - strand, within Echvi_0821at 938.331 kb on - strand, within Echvi_0821at 938.331 kb on - strand, within Echvi_0821at 938.343 kb on - strand, within Echvi_0821at 938.344 kb on + strand, within Echvi_0821at 938.344 kb on + strand, within Echvi_0821at 938.344 kb on + strand, within Echvi_0821at 938.344 kb on + strand, within Echvi_0821at 938.345 kb on - strand, within Echvi_0821at 938.468 kb on - strand, within Echvi_0821at 938.468 kb on - strand, within Echvi_0821at 938.519 kb on + strand, within Echvi_0821at 938.520 kb on - strand, within Echvi_0821at 938.561 kb on + strandat 938.562 kb on - strandat 938.572 kb on + strandat 938.596 kb on - strandat 938.644 kb on + strand, within Echvi_0822at 938.723 kb on - strand, within Echvi_0822at 938.732 kb on - strand, within Echvi_0822at 938.748 kb on - strand, within Echvi_0822at 938.808 kb on + strand, within Echvi_0822at 938.877 kb on - strand, within Echvi_0822at 938.963 kb on + strand, within Echvi_0822at 938.966 kb on - strand, within Echvi_0822at 939.002 kb on - strand, within Echvi_0822at 939.041 kb on - strand, within Echvi_0822at 939.080 kb on - strandat 939.080 kb on - strandat 939.094 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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936,906 + -0.4
936,907 - +0.5
936,907 - +0.4
936,907 - -0.3
936,947 + +0.2
936,979 + +1.0
936,979 + +1.0
936,984 + +0.4
937,002 - +0.7
937,002 - +0.1
937,012 + -1.0
937,012 + +0.4
937,020 - +0.4
937,053 + -0.1
937,071 + -0.7
937,072 - +0.7
937,087 - +1.2
937,087 - +0.9
937,091 + +0.1
937,149 - -0.3
937,226 - Echvi_0819 0.16 -2.5
937,226 - Echvi_0819 0.16 -0.4
937,241 - Echvi_0819 0.19 +0.6
937,280 - Echvi_0819 0.27 +0.2
937,306 - Echvi_0819 0.32 +0.3
937,376 + Echvi_0819 0.45 -2.2
937,387 - Echvi_0819 0.47 +0.9
937,411 + Echvi_0819 0.52 -1.4
937,411 + Echvi_0819 0.52 +0.1
937,411 + Echvi_0819 0.52 -1.9
937,411 + Echvi_0819 0.52 +0.3
937,411 + Echvi_0819 0.52 -0.5
937,411 + Echvi_0819 0.52 +0.6
937,412 - Echvi_0819 0.52 +1.9
937,412 - Echvi_0819 0.52 -1.0
937,413 + Echvi_0819 0.52 +0.3
937,414 - Echvi_0819 0.52 -0.6
937,414 - Echvi_0819 0.52 -2.6
937,415 + Echvi_0819 0.52 -1.1
937,415 + Echvi_0819 0.52 +0.9
937,415 + Echvi_0819 0.52 -0.5
937,415 + Echvi_0819 0.52 -0.5
937,415 + Echvi_0819 0.52 -0.6
937,415 + Echvi_0819 0.52 +0.1
937,415 + Echvi_0819 0.52 +0.2
937,415 + Echvi_0819 0.52 -0.1
937,415 + Echvi_0819 0.52 +1.0
937,415 + Echvi_0819 0.52 +0.6
937,416 - Echvi_0819 0.53 -0.0
937,416 - Echvi_0819 0.53 -0.6
937,416 - Echvi_0819 0.53 +0.2
937,416 - Echvi_0819 0.53 -0.5
937,416 - Echvi_0819 0.53 +0.9
937,416 - Echvi_0819 0.53 -0.2
937,422 - Echvi_0819 0.54 -0.6
937,436 + Echvi_0819 0.57 +0.5
937,585 + Echvi_0819 0.85 -0.6
937,615 + -0.2
937,639 + +0.6
937,649 + +1.3
937,653 + +0.5
937,658 - -0.6
937,658 - -0.4
937,701 - +1.6
937,701 - -0.4
937,705 - -0.8
937,800 - -0.9
937,810 + -0.0
937,811 - +1.6
937,872 + Echvi_0820 0.28 -2.1
937,872 + Echvi_0820 0.28 -0.6
937,872 + Echvi_0820 0.28 -0.6
937,872 + Echvi_0820 0.28 -0.0
937,872 + Echvi_0820 0.28 -0.8
937,872 + Echvi_0820 0.28 -0.4
937,872 + Echvi_0820 0.28 -0.1
937,872 + Echvi_0820 0.28 +0.9
937,872 + Echvi_0820 0.28 +0.4
937,872 + Echvi_0820 0.28 -0.4
937,873 - Echvi_0820 0.28 +0.5
937,873 - Echvi_0820 0.28 -0.8
937,873 - Echvi_0820 0.28 -1.0
937,873 - Echvi_0820 0.28 -1.1
937,873 - Echvi_0820 0.28 +0.3
937,876 + Echvi_0820 0.29 +0.8
937,877 - Echvi_0820 0.30 -1.7
937,914 - Echvi_0820 0.41 -1.4
937,921 + Echvi_0820 0.43 +0.2
937,963 - Echvi_0820 0.56 -0.2
938,015 + Echvi_0820 0.72 -0.8
938,015 + Echvi_0820 0.72 -1.4
938,015 + Echvi_0820 0.72 +0.2
938,016 - Echvi_0820 0.72 +1.4
938,018 - Echvi_0820 0.72 -0.9
938,021 + Echvi_0820 0.73 -1.3
938,021 + Echvi_0820 0.73 +0.7
938,032 + Echvi_0820 0.77 -2.6
938,068 + Echvi_0820 0.88 +1.6
938,069 - Echvi_0820 0.88 -0.4
938,069 - Echvi_0820 0.88 -0.4
938,117 - -0.7
938,121 - -0.3
938,121 - +0.5
938,122 + +2.2
938,122 + -0.8
938,122 + +0.8
938,123 - -1.6
938,123 - -1.6
938,123 - +0.0
938,128 + +0.4
938,128 + +0.3
938,128 + -0.1
938,128 + +0.6
938,129 - -0.2
938,129 - +1.9
938,131 - -1.3
938,131 - +0.2
938,197 - -0.1
938,207 + -1.6
938,207 + +0.8
938,208 - -0.3
938,222 - Echvi_0821 0.11 +0.9
938,239 - Echvi_0821 0.15 -0.4
938,313 + Echvi_0821 0.33 -2.2
938,317 + Echvi_0821 0.34 +0.6
938,317 + Echvi_0821 0.34 +0.9
938,317 + Echvi_0821 0.34 -0.3
938,318 - Echvi_0821 0.35 +0.0
938,318 - Echvi_0821 0.35 -2.3
938,318 - Echvi_0821 0.35 +0.4
938,323 + Echvi_0821 0.36 -2.9
938,323 + Echvi_0821 0.36 +1.0
938,323 + Echvi_0821 0.36 -0.4
938,323 + Echvi_0821 0.36 +0.1
938,324 - Echvi_0821 0.36 -2.8
938,324 - Echvi_0821 0.36 +1.1
938,324 - Echvi_0821 0.36 +0.6
938,327 + Echvi_0821 0.37 -0.4
938,327 + Echvi_0821 0.37 +0.4
938,331 - Echvi_0821 0.38 +1.2
938,331 - Echvi_0821 0.38 -0.4
938,331 - Echvi_0821 0.38 -0.3
938,343 - Echvi_0821 0.41 +0.3
938,344 + Echvi_0821 0.41 +0.6
938,344 + Echvi_0821 0.41 +0.4
938,344 + Echvi_0821 0.41 -2.3
938,344 + Echvi_0821 0.41 +0.2
938,345 - Echvi_0821 0.41 +0.5
938,468 - Echvi_0821 0.72 +0.1
938,468 - Echvi_0821 0.72 -2.1
938,519 + Echvi_0821 0.85 +1.6
938,520 - Echvi_0821 0.85 -0.7
938,561 + +0.7
938,562 - -0.1
938,572 + -0.7
938,596 - -0.6
938,644 + Echvi_0822 0.11 +0.3
938,723 - Echvi_0822 0.27 -0.5
938,732 - Echvi_0822 0.28 +1.0
938,748 - Echvi_0822 0.31 +0.2
938,808 + Echvi_0822 0.43 +0.9
938,877 - Echvi_0822 0.56 +0.1
938,963 + Echvi_0822 0.73 -1.0
938,966 - Echvi_0822 0.73 +1.3
939,002 - Echvi_0822 0.80 -0.6
939,041 - Echvi_0822 0.88 -2.3
939,080 - -0.3
939,080 - -0.5
939,094 - -1.1

Or see this region's nucleotide sequence