Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0881

Experiment: m.b. Choline chloride 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0879 and B158DRAFT_0880 are separated by 2 nucleotidesB158DRAFT_0880 and B158DRAFT_0881 are separated by 152 nucleotidesB158DRAFT_0881 and B158DRAFT_0882 are separated by 26 nucleotides B158DRAFT_0879: B158DRAFT_0879 - Predicted S-adenosylmethionine-dependent methyltransferase, at 894,510 to 895,133 _0879 B158DRAFT_0880: B158DRAFT_0880 - PilZ domain., at 895,136 to 895,528 _0880 B158DRAFT_0881: B158DRAFT_0881 - ATP-binding cassette protein, ChvD family, at 895,681 to 897,348 _0881 B158DRAFT_0882: B158DRAFT_0882 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 897,375 to 899,090 _0882 Position (kb) 895 896 897 898Strain fitness (log2 ratio) -1 0 1at 894.685 kb on + strand, within B158DRAFT_0879at 894.758 kb on - strand, within B158DRAFT_0879at 894.777 kb on + strand, within B158DRAFT_0879at 894.780 kb on - strand, within B158DRAFT_0879at 894.910 kb on - strand, within B158DRAFT_0879at 894.943 kb on + strand, within B158DRAFT_0879at 894.951 kb on - strand, within B158DRAFT_0879at 894.954 kb on + strand, within B158DRAFT_0879at 894.970 kb on - strand, within B158DRAFT_0879at 894.996 kb on - strand, within B158DRAFT_0879at 895.056 kb on + strand, within B158DRAFT_0879at 895.082 kb on + strandat 895.205 kb on - strand, within B158DRAFT_0880at 895.239 kb on + strand, within B158DRAFT_0880at 895.457 kb on - strand, within B158DRAFT_0880at 895.459 kb on - strand, within B158DRAFT_0880at 895.586 kb on - strandat 895.622 kb on + strandat 895.623 kb on - strandat 895.630 kb on - strandat 895.663 kb on - strandat 895.701 kb on + strandat 895.784 kb on - strandat 895.790 kb on + strandat 895.798 kb on - strandat 895.834 kb on + strandat 895.863 kb on + strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.871 kb on - strand, within B158DRAFT_0881at 895.890 kb on - strand, within B158DRAFT_0881at 895.994 kb on + strand, within B158DRAFT_0881at 895.994 kb on + strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.002 kb on - strand, within B158DRAFT_0881at 896.027 kb on + strand, within B158DRAFT_0881at 896.082 kb on + strand, within B158DRAFT_0881at 896.110 kb on + strand, within B158DRAFT_0881at 896.167 kb on + strand, within B158DRAFT_0881at 896.167 kb on + strand, within B158DRAFT_0881at 896.167 kb on + strand, within B158DRAFT_0881at 896.167 kb on + strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.175 kb on - strand, within B158DRAFT_0881at 896.225 kb on + strand, within B158DRAFT_0881at 896.227 kb on - strand, within B158DRAFT_0881at 896.229 kb on + strand, within B158DRAFT_0881at 896.295 kb on + strand, within B158DRAFT_0881at 896.295 kb on + strand, within B158DRAFT_0881at 896.359 kb on + strand, within B158DRAFT_0881at 896.359 kb on + strand, within B158DRAFT_0881at 896.359 kb on + strand, within B158DRAFT_0881at 896.359 kb on + strand, within B158DRAFT_0881at 896.367 kb on - strand, within B158DRAFT_0881at 896.373 kb on - strand, within B158DRAFT_0881at 896.383 kb on - strand, within B158DRAFT_0881at 896.387 kb on + strand, within B158DRAFT_0881at 896.403 kb on - strand, within B158DRAFT_0881at 896.403 kb on - strand, within B158DRAFT_0881at 896.403 kb on - strand, within B158DRAFT_0881at 896.447 kb on - strand, within B158DRAFT_0881at 896.518 kb on - strand, within B158DRAFT_0881at 896.546 kb on + strand, within B158DRAFT_0881at 896.557 kb on + strand, within B158DRAFT_0881at 896.707 kb on + strand, within B158DRAFT_0881at 896.845 kb on + strand, within B158DRAFT_0881at 896.852 kb on + strand, within B158DRAFT_0881at 896.893 kb on + strand, within B158DRAFT_0881at 896.952 kb on + strand, within B158DRAFT_0881at 896.960 kb on - strand, within B158DRAFT_0881at 896.972 kb on + strand, within B158DRAFT_0881at 896.990 kb on + strand, within B158DRAFT_0881at 897.021 kb on - strand, within B158DRAFT_0881at 897.021 kb on - strand, within B158DRAFT_0881at 897.023 kb on + strand, within B158DRAFT_0881at 897.023 kb on + strand, within B158DRAFT_0881at 897.023 kb on + strand, within B158DRAFT_0881at 897.023 kb on + strand, within B158DRAFT_0881at 897.023 kb on + strand, within B158DRAFT_0881at 897.031 kb on - strand, within B158DRAFT_0881at 897.031 kb on - strand, within B158DRAFT_0881at 897.031 kb on - strand, within B158DRAFT_0881at 897.061 kb on - strand, within B158DRAFT_0881at 897.061 kb on - strand, within B158DRAFT_0881at 897.083 kb on - strand, within B158DRAFT_0881at 897.095 kb on + strand, within B158DRAFT_0881at 897.095 kb on + strand, within B158DRAFT_0881at 897.095 kb on + strand, within B158DRAFT_0881at 897.095 kb on + strand, within B158DRAFT_0881at 897.095 kb on + strand, within B158DRAFT_0881at 897.103 kb on - strand, within B158DRAFT_0881at 897.103 kb on - strand, within B158DRAFT_0881at 897.160 kb on + strand, within B158DRAFT_0881at 897.168 kb on - strand, within B158DRAFT_0881at 897.168 kb on - strand, within B158DRAFT_0881at 897.168 kb on - strand, within B158DRAFT_0881at 897.226 kb on + strandat 897.308 kb on + strandat 897.355 kb on + strandat 897.390 kb on + strandat 897.408 kb on - strandat 897.408 kb on - strandat 897.408 kb on - strandat 897.466 kb on + strandat 897.502 kb on - strandat 897.510 kb on + strandat 897.513 kb on + strandat 897.555 kb on + strand, within B158DRAFT_0882at 897.566 kb on + strand, within B158DRAFT_0882at 897.574 kb on - strand, within B158DRAFT_0882at 897.575 kb on - strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.584 kb on + strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.592 kb on - strand, within B158DRAFT_0882at 897.658 kb on - strand, within B158DRAFT_0882at 897.661 kb on + strand, within B158DRAFT_0882at 897.669 kb on - strand, within B158DRAFT_0882at 897.710 kb on + strand, within B158DRAFT_0882at 897.710 kb on + strand, within B158DRAFT_0882at 897.718 kb on - strand, within B158DRAFT_0882at 897.718 kb on - strand, within B158DRAFT_0882at 897.718 kb on - strand, within B158DRAFT_0882at 897.718 kb on - strand, within B158DRAFT_0882at 897.730 kb on - strand, within B158DRAFT_0882at 897.730 kb on - strand, within B158DRAFT_0882at 897.730 kb on - strand, within B158DRAFT_0882at 897.730 kb on - strand, within B158DRAFT_0882at 897.779 kb on + strand, within B158DRAFT_0882at 897.779 kb on + strand, within B158DRAFT_0882at 897.779 kb on + strand, within B158DRAFT_0882at 897.787 kb on - strand, within B158DRAFT_0882at 897.789 kb on + strand, within B158DRAFT_0882at 897.790 kb on + strand, within B158DRAFT_0882at 897.798 kb on - strand, within B158DRAFT_0882at 897.802 kb on - strand, within B158DRAFT_0882at 897.845 kb on - strand, within B158DRAFT_0882at 897.874 kb on - strand, within B158DRAFT_0882at 897.891 kb on + strand, within B158DRAFT_0882at 897.899 kb on - strand, within B158DRAFT_0882at 897.906 kb on - strand, within B158DRAFT_0882at 897.938 kb on - strand, within B158DRAFT_0882at 898.041 kb on + strand, within B158DRAFT_0882at 898.099 kb on + strand, within B158DRAFT_0882at 898.107 kb on - strand, within B158DRAFT_0882at 898.107 kb on - strand, within B158DRAFT_0882at 898.107 kb on - strand, within B158DRAFT_0882at 898.107 kb on - strand, within B158DRAFT_0882at 898.112 kb on - strand, within B158DRAFT_0882at 898.142 kb on - strand, within B158DRAFT_0882at 898.205 kb on - strand, within B158DRAFT_0882at 898.212 kb on + strand, within B158DRAFT_0882at 898.217 kb on + strand, within B158DRAFT_0882at 898.233 kb on + strand, within B158DRAFT_0882at 898.233 kb on + strand, within B158DRAFT_0882at 898.234 kb on - strand, within B158DRAFT_0882at 898.235 kb on - strand, within B158DRAFT_0882at 898.246 kb on - strand, within B158DRAFT_0882at 898.246 kb on - strand, within B158DRAFT_0882at 898.251 kb on - strand, within B158DRAFT_0882at 898.277 kb on - strand, within B158DRAFT_0882at 898.333 kb on - strand, within B158DRAFT_0882

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 15 mM
remove
894,685 + B158DRAFT_0879 0.28 -0.1
894,758 - B158DRAFT_0879 0.40 -0.1
894,777 + B158DRAFT_0879 0.43 -0.2
894,780 - B158DRAFT_0879 0.43 -0.4
894,910 - B158DRAFT_0879 0.64 -0.4
894,943 + B158DRAFT_0879 0.69 -0.0
894,951 - B158DRAFT_0879 0.71 +0.2
894,954 + B158DRAFT_0879 0.71 -0.3
894,970 - B158DRAFT_0879 0.74 -0.0
894,996 - B158DRAFT_0879 0.78 +0.2
895,056 + B158DRAFT_0879 0.88 +0.1
895,082 + -0.3
895,205 - B158DRAFT_0880 0.18 -0.1
895,239 + B158DRAFT_0880 0.26 +0.5
895,457 - B158DRAFT_0880 0.82 +0.7
895,459 - B158DRAFT_0880 0.82 +0.5
895,586 - -0.0
895,622 + -0.6
895,623 - -0.4
895,630 - -0.4
895,663 - -0.1
895,701 + +0.1
895,784 - +0.1
895,790 + +0.6
895,798 - +0.1
895,834 + +0.3
895,863 + B158DRAFT_0881 0.11 +0.6
895,871 - B158DRAFT_0881 0.11 +0.8
895,871 - B158DRAFT_0881 0.11 -0.6
895,871 - B158DRAFT_0881 0.11 +0.8
895,871 - B158DRAFT_0881 0.11 +0.6
895,890 - B158DRAFT_0881 0.13 +0.3
895,994 + B158DRAFT_0881 0.19 +1.0
895,994 + B158DRAFT_0881 0.19 +0.3
896,002 - B158DRAFT_0881 0.19 +0.7
896,002 - B158DRAFT_0881 0.19 +1.4
896,002 - B158DRAFT_0881 0.19 +0.4
896,002 - B158DRAFT_0881 0.19 +0.4
896,027 + B158DRAFT_0881 0.21 +0.7
896,082 + B158DRAFT_0881 0.24 +0.8
896,110 + B158DRAFT_0881 0.26 +0.3
896,167 + B158DRAFT_0881 0.29 +0.2
896,167 + B158DRAFT_0881 0.29 +0.3
896,167 + B158DRAFT_0881 0.29 +0.7
896,167 + B158DRAFT_0881 0.29 -0.0
896,175 - B158DRAFT_0881 0.30 +0.2
896,175 - B158DRAFT_0881 0.30 +0.6
896,175 - B158DRAFT_0881 0.30 +0.3
896,175 - B158DRAFT_0881 0.30 +0.4
896,175 - B158DRAFT_0881 0.30 +0.4
896,175 - B158DRAFT_0881 0.30 +0.7
896,175 - B158DRAFT_0881 0.30 +0.6
896,175 - B158DRAFT_0881 0.30 +0.8
896,175 - B158DRAFT_0881 0.30 +0.6
896,225 + B158DRAFT_0881 0.33 +0.4
896,227 - B158DRAFT_0881 0.33 +0.2
896,229 + B158DRAFT_0881 0.33 +0.9
896,295 + B158DRAFT_0881 0.37 +1.0
896,295 + B158DRAFT_0881 0.37 +0.5
896,359 + B158DRAFT_0881 0.41 +0.5
896,359 + B158DRAFT_0881 0.41 +0.3
896,359 + B158DRAFT_0881 0.41 +0.4
896,359 + B158DRAFT_0881 0.41 +0.5
896,367 - B158DRAFT_0881 0.41 +0.4
896,373 - B158DRAFT_0881 0.41 +0.3
896,383 - B158DRAFT_0881 0.42 +0.3
896,387 + B158DRAFT_0881 0.42 +0.6
896,403 - B158DRAFT_0881 0.43 +0.5
896,403 - B158DRAFT_0881 0.43 +0.3
896,403 - B158DRAFT_0881 0.43 -0.6
896,447 - B158DRAFT_0881 0.46 +0.7
896,518 - B158DRAFT_0881 0.50 -0.3
896,546 + B158DRAFT_0881 0.52 +0.9
896,557 + B158DRAFT_0881 0.53 +0.4
896,707 + B158DRAFT_0881 0.62 -0.2
896,845 + B158DRAFT_0881 0.70 +0.7
896,852 + B158DRAFT_0881 0.70 +0.9
896,893 + B158DRAFT_0881 0.73 +0.0
896,952 + B158DRAFT_0881 0.76 +0.3
896,960 - B158DRAFT_0881 0.77 +0.4
896,972 + B158DRAFT_0881 0.77 +0.5
896,990 + B158DRAFT_0881 0.78 +0.3
897,021 - B158DRAFT_0881 0.80 +0.3
897,021 - B158DRAFT_0881 0.80 +0.7
897,023 + B158DRAFT_0881 0.80 -0.3
897,023 + B158DRAFT_0881 0.80 +0.4
897,023 + B158DRAFT_0881 0.80 +1.0
897,023 + B158DRAFT_0881 0.80 +0.1
897,023 + B158DRAFT_0881 0.80 -0.1
897,031 - B158DRAFT_0881 0.81 +0.6
897,031 - B158DRAFT_0881 0.81 +0.0
897,031 - B158DRAFT_0881 0.81 +0.4
897,061 - B158DRAFT_0881 0.83 +0.3
897,061 - B158DRAFT_0881 0.83 +0.4
897,083 - B158DRAFT_0881 0.84 +0.2
897,095 + B158DRAFT_0881 0.85 +0.4
897,095 + B158DRAFT_0881 0.85 +0.3
897,095 + B158DRAFT_0881 0.85 +0.2
897,095 + B158DRAFT_0881 0.85 +0.3
897,095 + B158DRAFT_0881 0.85 +0.4
897,103 - B158DRAFT_0881 0.85 +0.4
897,103 - B158DRAFT_0881 0.85 +0.3
897,160 + B158DRAFT_0881 0.89 +0.8
897,168 - B158DRAFT_0881 0.89 +0.5
897,168 - B158DRAFT_0881 0.89 +0.5
897,168 - B158DRAFT_0881 0.89 +0.4
897,226 + +0.1
897,308 + +0.4
897,355 + +0.5
897,390 + +0.2
897,408 - +0.1
897,408 - +1.0
897,408 - +0.6
897,466 + +0.1
897,502 - -0.4
897,510 + -0.0
897,513 + -0.1
897,555 + B158DRAFT_0882 0.10 -0.4
897,566 + B158DRAFT_0882 0.11 -0.4
897,574 - B158DRAFT_0882 0.12 -1.3
897,575 - B158DRAFT_0882 0.12 +0.3
897,584 + B158DRAFT_0882 0.12 -0.0
897,584 + B158DRAFT_0882 0.12 +0.1
897,584 + B158DRAFT_0882 0.12 -0.2
897,584 + B158DRAFT_0882 0.12 -0.3
897,584 + B158DRAFT_0882 0.12 -0.0
897,584 + B158DRAFT_0882 0.12 +0.2
897,584 + B158DRAFT_0882 0.12 +0.0
897,584 + B158DRAFT_0882 0.12 -0.3
897,584 + B158DRAFT_0882 0.12 -0.3
897,584 + B158DRAFT_0882 0.12 -0.2
897,584 + B158DRAFT_0882 0.12 -0.3
897,584 + B158DRAFT_0882 0.12 -0.7
897,584 + B158DRAFT_0882 0.12 +0.0
897,584 + B158DRAFT_0882 0.12 +0.1
897,584 + B158DRAFT_0882 0.12 +0.1
897,584 + B158DRAFT_0882 0.12 +0.7
897,584 + B158DRAFT_0882 0.12 -0.5
897,584 + B158DRAFT_0882 0.12 -0.0
897,584 + B158DRAFT_0882 0.12 -0.0
897,584 + B158DRAFT_0882 0.12 -0.4
897,584 + B158DRAFT_0882 0.12 +0.3
897,584 + B158DRAFT_0882 0.12 -0.5
897,592 - B158DRAFT_0882 0.13 +0.2
897,592 - B158DRAFT_0882 0.13 -0.0
897,592 - B158DRAFT_0882 0.13 -0.2
897,592 - B158DRAFT_0882 0.13 -0.2
897,592 - B158DRAFT_0882 0.13 +0.2
897,592 - B158DRAFT_0882 0.13 -0.1
897,592 - B158DRAFT_0882 0.13 -0.1
897,592 - B158DRAFT_0882 0.13 -0.0
897,592 - B158DRAFT_0882 0.13 -0.4
897,592 - B158DRAFT_0882 0.13 -0.2
897,658 - B158DRAFT_0882 0.16 -0.1
897,661 + B158DRAFT_0882 0.17 -0.4
897,669 - B158DRAFT_0882 0.17 +0.1
897,710 + B158DRAFT_0882 0.20 -0.1
897,710 + B158DRAFT_0882 0.20 -0.6
897,718 - B158DRAFT_0882 0.20 +0.0
897,718 - B158DRAFT_0882 0.20 +0.0
897,718 - B158DRAFT_0882 0.20 -0.0
897,718 - B158DRAFT_0882 0.20 -0.8
897,730 - B158DRAFT_0882 0.21 -0.3
897,730 - B158DRAFT_0882 0.21 -0.2
897,730 - B158DRAFT_0882 0.21 +0.3
897,730 - B158DRAFT_0882 0.21 +0.6
897,779 + B158DRAFT_0882 0.24 +0.1
897,779 + B158DRAFT_0882 0.24 +0.2
897,779 + B158DRAFT_0882 0.24 -0.2
897,787 - B158DRAFT_0882 0.24 -0.1
897,789 + B158DRAFT_0882 0.24 -0.2
897,790 + B158DRAFT_0882 0.24 -0.2
897,798 - B158DRAFT_0882 0.25 +0.3
897,802 - B158DRAFT_0882 0.25 -0.9
897,845 - B158DRAFT_0882 0.27 +0.2
897,874 - B158DRAFT_0882 0.29 +0.1
897,891 + B158DRAFT_0882 0.30 +0.2
897,899 - B158DRAFT_0882 0.31 -0.5
897,906 - B158DRAFT_0882 0.31 +0.2
897,938 - B158DRAFT_0882 0.33 -0.2
898,041 + B158DRAFT_0882 0.39 -0.6
898,099 + B158DRAFT_0882 0.42 +0.4
898,107 - B158DRAFT_0882 0.43 -0.3
898,107 - B158DRAFT_0882 0.43 -0.0
898,107 - B158DRAFT_0882 0.43 -0.3
898,107 - B158DRAFT_0882 0.43 -0.0
898,112 - B158DRAFT_0882 0.43 +0.1
898,142 - B158DRAFT_0882 0.45 +0.0
898,205 - B158DRAFT_0882 0.48 +0.3
898,212 + B158DRAFT_0882 0.49 -0.2
898,217 + B158DRAFT_0882 0.49 -0.2
898,233 + B158DRAFT_0882 0.50 -0.1
898,233 + B158DRAFT_0882 0.50 -0.6
898,234 - B158DRAFT_0882 0.50 -0.1
898,235 - B158DRAFT_0882 0.50 -0.4
898,246 - B158DRAFT_0882 0.51 +0.2
898,246 - B158DRAFT_0882 0.51 +0.3
898,251 - B158DRAFT_0882 0.51 -0.1
898,277 - B158DRAFT_0882 0.53 +0.2
898,333 - B158DRAFT_0882 0.56 +0.2

Or see this region's nucleotide sequence