Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0828

Experiment: m.b. Choline chloride 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0826 and B158DRAFT_0827 overlap by 14 nucleotidesB158DRAFT_0827 and B158DRAFT_0828 are separated by 254 nucleotidesB158DRAFT_0828 and B158DRAFT_0829 are separated by 3 nucleotidesB158DRAFT_0829 and B158DRAFT_0830 are separated by 13 nucleotides B158DRAFT_0826: B158DRAFT_0826 - drug resistance transporter, Bcr/CflA subfamily, at 837,950 to 839,134 _0826 B158DRAFT_0827: B158DRAFT_0827 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 839,121 to 839,726 _0827 B158DRAFT_0828: B158DRAFT_0828 - dihydroneopterin aldolase, at 839,981 to 840,334 _0828 B158DRAFT_0829: B158DRAFT_0829 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 840,338 to 840,835 _0829 B158DRAFT_0830: B158DRAFT_0830 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 840,849 to 841,565 _0830 Position (kb) 839 840 841Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 839.000 kb on + strand, within B158DRAFT_0826at 839.000 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.013 kb on - strand, within B158DRAFT_0826at 839.020 kb on + strandat 839.020 kb on + strandat 839.028 kb on - strandat 839.043 kb on + strandat 839.043 kb on + strandat 839.043 kb on + strandat 839.051 kb on - strandat 839.060 kb on + strandat 839.076 kb on - strandat 839.076 kb on - strandat 839.087 kb on + strandat 839.088 kb on - strandat 839.299 kb on - strand, within B158DRAFT_0827at 839.334 kb on - strand, within B158DRAFT_0827at 839.356 kb on + strand, within B158DRAFT_0827at 839.383 kb on - strand, within B158DRAFT_0827at 839.408 kb on - strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.499 kb on - strand, within B158DRAFT_0827at 839.560 kb on - strand, within B158DRAFT_0827at 839.586 kb on + strand, within B158DRAFT_0827at 839.608 kb on - strand, within B158DRAFT_0827at 839.608 kb on - strand, within B158DRAFT_0827at 839.686 kb on + strandat 839.686 kb on + strandat 839.694 kb on - strandat 839.733 kb on + strandat 839.733 kb on + strandat 839.733 kb on + strandat 839.740 kb on - strandat 839.741 kb on - strandat 839.767 kb on - strandat 839.769 kb on + strandat 839.777 kb on - strandat 839.781 kb on - strandat 839.781 kb on - strandat 839.792 kb on - strandat 839.812 kb on + strandat 839.885 kb on + strandat 839.885 kb on + strandat 839.938 kb on + strandat 840.383 kb on + strandat 840.496 kb on + strand, within B158DRAFT_0829at 840.504 kb on - strand, within B158DRAFT_0829at 840.544 kb on + strand, within B158DRAFT_0829at 840.653 kb on + strand, within B158DRAFT_0829at 840.672 kb on + strand, within B158DRAFT_0829at 840.683 kb on + strand, within B158DRAFT_0829at 840.683 kb on + strand, within B158DRAFT_0829at 840.690 kb on + strand, within B158DRAFT_0829at 840.690 kb on + strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.820 kb on - strandat 840.910 kb on + strandat 840.910 kb on + strandat 840.910 kb on + strandat 840.917 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.929 kb on + strand, within B158DRAFT_0830at 840.930 kb on + strand, within B158DRAFT_0830at 841.037 kb on + strand, within B158DRAFT_0830at 841.051 kb on + strand, within B158DRAFT_0830at 841.054 kb on + strand, within B158DRAFT_0830at 841.067 kb on + strand, within B158DRAFT_0830at 841.075 kb on - strand, within B158DRAFT_0830at 841.080 kb on + strand, within B158DRAFT_0830at 841.083 kb on - strand, within B158DRAFT_0830at 841.231 kb on - strand, within B158DRAFT_0830at 841.254 kb on + strand, within B158DRAFT_0830at 841.292 kb on + strand, within B158DRAFT_0830at 841.296 kb on - strand, within B158DRAFT_0830at 841.298 kb on - strand, within B158DRAFT_0830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 15 mM
remove
839,000 + B158DRAFT_0826 0.89 -0.8
839,000 + B158DRAFT_0826 0.89 +0.2
839,005 + B158DRAFT_0826 0.89 +0.1
839,005 + B158DRAFT_0826 0.89 -0.4
839,005 + B158DRAFT_0826 0.89 +0.3
839,005 + B158DRAFT_0826 0.89 -0.2
839,013 - B158DRAFT_0826 0.90 +0.1
839,020 + +0.7
839,020 + -0.7
839,028 - -0.5
839,043 + -0.4
839,043 + -0.1
839,043 + -0.1
839,051 - -0.5
839,060 + -0.7
839,076 - -0.7
839,076 - -0.3
839,087 + -0.7
839,088 - -0.1
839,299 - B158DRAFT_0827 0.29 -3.7
839,334 - B158DRAFT_0827 0.35 -2.1
839,356 + B158DRAFT_0827 0.39 -2.7
839,383 - B158DRAFT_0827 0.43 -1.8
839,408 - B158DRAFT_0827 0.47 -2.8
839,437 + B158DRAFT_0827 0.52 -0.4
839,437 + B158DRAFT_0827 0.52 -3.0
839,437 + B158DRAFT_0827 0.52 -2.6
839,437 + B158DRAFT_0827 0.52 -2.6
839,437 + B158DRAFT_0827 0.52 -2.8
839,445 - B158DRAFT_0827 0.53 -0.4
839,445 - B158DRAFT_0827 0.53 -2.1
839,445 - B158DRAFT_0827 0.53 -3.1
839,445 - B158DRAFT_0827 0.53 -2.8
839,499 - B158DRAFT_0827 0.62 -4.1
839,560 - B158DRAFT_0827 0.72 -2.6
839,586 + B158DRAFT_0827 0.77 -2.2
839,608 - B158DRAFT_0827 0.80 -2.3
839,608 - B158DRAFT_0827 0.80 -1.7
839,686 + -2.5
839,686 + -2.7
839,694 - -1.5
839,733 + -2.7
839,733 + -3.3
839,733 + -4.2
839,740 - +0.0
839,741 - -0.6
839,767 - -0.5
839,769 + -1.9
839,777 - -0.0
839,781 - +0.7
839,781 - +0.3
839,792 - +0.6
839,812 + -3.2
839,885 + -1.0
839,885 + -0.4
839,938 + +2.2
840,383 + +0.5
840,496 + B158DRAFT_0829 0.32 +1.5
840,504 - B158DRAFT_0829 0.33 +2.4
840,544 + B158DRAFT_0829 0.41 -0.7
840,653 + B158DRAFT_0829 0.63 +0.1
840,672 + B158DRAFT_0829 0.67 +1.3
840,683 + B158DRAFT_0829 0.69 +0.3
840,683 + B158DRAFT_0829 0.69 +0.1
840,690 + B158DRAFT_0829 0.71 +0.2
840,690 + B158DRAFT_0829 0.71 +0.4
840,698 - B158DRAFT_0829 0.72 +2.5
840,698 - B158DRAFT_0829 0.72 +2.4
840,698 - B158DRAFT_0829 0.72 +2.2
840,820 - +4.4
840,910 + +4.4
840,910 + +4.3
840,910 + +4.3
840,917 - +4.7
840,918 - +4.7
840,918 - +4.7
840,918 - +4.5
840,918 - +4.4
840,918 - +4.8
840,918 - +4.7
840,929 + B158DRAFT_0830 0.11 +3.7
840,930 + B158DRAFT_0830 0.11 +3.9
841,037 + B158DRAFT_0830 0.26 +3.7
841,051 + B158DRAFT_0830 0.28 +3.9
841,054 + B158DRAFT_0830 0.29 +4.0
841,067 + B158DRAFT_0830 0.30 +3.9
841,075 - B158DRAFT_0830 0.32 +4.5
841,080 + B158DRAFT_0830 0.32 +3.7
841,083 - B158DRAFT_0830 0.33 +5.0
841,231 - B158DRAFT_0830 0.53 +4.7
841,254 + B158DRAFT_0830 0.56 +4.1
841,292 + B158DRAFT_0830 0.62 +4.2
841,296 - B158DRAFT_0830 0.62 +4.8
841,298 - B158DRAFT_0830 0.63 +4.7

Or see this region's nucleotide sequence