Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0598

Experiment: m.b. Choline chloride 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0596 and B158DRAFT_0597 overlap by 7 nucleotidesB158DRAFT_0597 and B158DRAFT_0598 are separated by 17 nucleotidesB158DRAFT_0598 and B158DRAFT_0599 are separated by 123 nucleotidesB158DRAFT_0599 and B158DRAFT_0600 are separated by 319 nucleotides B158DRAFT_0596: B158DRAFT_0596 - RNA polymerase sigma factor, sigma-70 family, at 602,321 to 602,971 _0596 B158DRAFT_0597: B158DRAFT_0597 - hypothetical protein, at 602,965 to 603,207 _0597 B158DRAFT_0598: B158DRAFT_0598 - Beta-barrel assembly machine subunit BamE, at 603,225 to 603,545 _0598 B158DRAFT_0599: B158DRAFT_0599 - Fe2+/Zn2+ uptake regulation proteins, at 603,669 to 604,070 _0599 B158DRAFT_0600: B158DRAFT_0600 - hypothetical protein, at 604,390 to 605,163 _0600 Position (kb) 603 604Strain fitness (log2 ratio) -1 0 1 2 3at 602.248 kb on + strandat 602.364 kb on + strandat 602.364 kb on + strandat 602.365 kb on + strandat 602.373 kb on - strandat 602.382 kb on + strandat 602.384 kb on + strandat 602.407 kb on + strand, within B158DRAFT_0596at 602.415 kb on - strand, within B158DRAFT_0596at 602.415 kb on - strand, within B158DRAFT_0596at 602.419 kb on + strand, within B158DRAFT_0596at 602.451 kb on - strand, within B158DRAFT_0596at 602.499 kb on + strand, within B158DRAFT_0596at 602.499 kb on + strand, within B158DRAFT_0596at 602.501 kb on + strand, within B158DRAFT_0596at 602.507 kb on - strand, within B158DRAFT_0596at 602.532 kb on + strand, within B158DRAFT_0596at 602.542 kb on + strand, within B158DRAFT_0596at 602.552 kb on - strand, within B158DRAFT_0596at 602.639 kb on + strand, within B158DRAFT_0596at 602.639 kb on + strand, within B158DRAFT_0596at 602.639 kb on + strand, within B158DRAFT_0596at 602.639 kb on + strand, within B158DRAFT_0596at 602.647 kb on - strand, within B158DRAFT_0596at 602.699 kb on - strand, within B158DRAFT_0596at 602.739 kb on - strand, within B158DRAFT_0596at 602.765 kb on + strand, within B158DRAFT_0596at 602.786 kb on + strand, within B158DRAFT_0596at 602.794 kb on - strand, within B158DRAFT_0596at 602.794 kb on - strand, within B158DRAFT_0596at 602.804 kb on + strand, within B158DRAFT_0596at 602.879 kb on - strand, within B158DRAFT_0596at 602.879 kb on - strand, within B158DRAFT_0596at 602.980 kb on + strandat 603.013 kb on - strand, within B158DRAFT_0597at 603.042 kb on + strand, within B158DRAFT_0597at 603.235 kb on + strandat 603.253 kb on - strandat 603.432 kb on - strand, within B158DRAFT_0598at 603.697 kb on + strandat 603.718 kb on + strand, within B158DRAFT_0599at 603.726 kb on - strand, within B158DRAFT_0599at 603.745 kb on + strand, within B158DRAFT_0599at 603.764 kb on - strand, within B158DRAFT_0599at 603.769 kb on - strand, within B158DRAFT_0599at 603.786 kb on + strand, within B158DRAFT_0599at 603.866 kb on - strand, within B158DRAFT_0599at 603.877 kb on + strand, within B158DRAFT_0599at 603.878 kb on + strand, within B158DRAFT_0599at 603.886 kb on - strand, within B158DRAFT_0599at 604.047 kb on - strandat 604.047 kb on - strandat 604.113 kb on + strandat 604.121 kb on - strandat 604.127 kb on - strandat 604.143 kb on + strandat 604.143 kb on - strandat 604.190 kb on + strandat 604.191 kb on + strandat 604.211 kb on - strandat 604.361 kb on + strandat 604.369 kb on - strandat 604.369 kb on - strandat 604.500 kb on - strand, within B158DRAFT_0600

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 15 mM
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602,248 + -0.1
602,364 + -0.3
602,364 + -0.3
602,365 + -0.2
602,373 - +0.2
602,382 + +0.2
602,384 + +0.5
602,407 + B158DRAFT_0596 0.13 -0.4
602,415 - B158DRAFT_0596 0.14 -0.2
602,415 - B158DRAFT_0596 0.14 -0.4
602,419 + B158DRAFT_0596 0.15 -0.1
602,451 - B158DRAFT_0596 0.20 -0.1
602,499 + B158DRAFT_0596 0.27 +0.4
602,499 + B158DRAFT_0596 0.27 +0.1
602,501 + B158DRAFT_0596 0.28 -0.0
602,507 - B158DRAFT_0596 0.29 -0.0
602,532 + B158DRAFT_0596 0.32 -0.2
602,542 + B158DRAFT_0596 0.34 -0.3
602,552 - B158DRAFT_0596 0.35 +0.0
602,639 + B158DRAFT_0596 0.49 +0.1
602,639 + B158DRAFT_0596 0.49 +0.2
602,639 + B158DRAFT_0596 0.49 -0.1
602,639 + B158DRAFT_0596 0.49 -0.3
602,647 - B158DRAFT_0596 0.50 -0.2
602,699 - B158DRAFT_0596 0.58 +0.1
602,739 - B158DRAFT_0596 0.64 +0.3
602,765 + B158DRAFT_0596 0.68 -0.2
602,786 + B158DRAFT_0596 0.71 +0.4
602,794 - B158DRAFT_0596 0.73 +0.2
602,794 - B158DRAFT_0596 0.73 +0.2
602,804 + B158DRAFT_0596 0.74 +0.7
602,879 - B158DRAFT_0596 0.86 +0.0
602,879 - B158DRAFT_0596 0.86 -0.0
602,980 + +0.0
603,013 - B158DRAFT_0597 0.20 -0.2
603,042 + B158DRAFT_0597 0.32 -0.8
603,235 + -0.1
603,253 - +0.2
603,432 - B158DRAFT_0598 0.64 -0.0
603,697 + +2.3
603,718 + B158DRAFT_0599 0.12 +2.4
603,726 - B158DRAFT_0599 0.14 +2.9
603,745 + B158DRAFT_0599 0.19 +2.4
603,764 - B158DRAFT_0599 0.24 +3.1
603,769 - B158DRAFT_0599 0.25 +2.9
603,786 + B158DRAFT_0599 0.29 +2.5
603,866 - B158DRAFT_0599 0.49 +3.0
603,877 + B158DRAFT_0599 0.52 +2.9
603,878 + B158DRAFT_0599 0.52 +2.8
603,886 - B158DRAFT_0599 0.54 +2.5
604,047 - +2.9
604,047 - +2.4
604,113 + +0.2
604,121 - +0.1
604,127 - -0.3
604,143 + +0.3
604,143 - +0.1
604,190 + -0.2
604,191 + -0.6
604,211 - +1.0
604,361 + +0.1
604,369 - -0.5
604,369 - -0.2
604,500 - B158DRAFT_0600 0.14 -0.2

Or see this region's nucleotide sequence