Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0572

Experiment: m.b. Choline chloride 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0571 and B158DRAFT_0572 are separated by 69 nucleotidesB158DRAFT_0572 and B158DRAFT_0573 are separated by 3 nucleotidesB158DRAFT_0573 and B158DRAFT_0574 are separated by 35 nucleotides B158DRAFT_0571: B158DRAFT_0571 - hypothetical protein, at 576,219 to 577,136 _0571 B158DRAFT_0572: B158DRAFT_0572 - rRNA methylases, at 577,206 to 577,898 _0572 B158DRAFT_0573: B158DRAFT_0573 - endoribonuclease L-PSP, putative, at 577,902 to 578,288 _0573 B158DRAFT_0574: B158DRAFT_0574 - (p)ppGpp synthetase, RelA/SpoT family, at 578,324 to 580,441 _0574 Position (kb) 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1at 576.243 kb on - strandat 576.251 kb on - strandat 576.251 kb on - strandat 576.373 kb on + strand, within B158DRAFT_0571at 576.383 kb on + strand, within B158DRAFT_0571at 576.466 kb on + strand, within B158DRAFT_0571at 576.474 kb on - strand, within B158DRAFT_0571at 576.527 kb on + strand, within B158DRAFT_0571at 576.543 kb on - strand, within B158DRAFT_0571at 576.543 kb on - strand, within B158DRAFT_0571at 576.687 kb on - strand, within B158DRAFT_0571at 576.721 kb on - strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.729 kb on + strand, within B158DRAFT_0571at 576.737 kb on - strand, within B158DRAFT_0571at 576.737 kb on - strand, within B158DRAFT_0571at 576.737 kb on - strand, within B158DRAFT_0571at 576.769 kb on - strand, within B158DRAFT_0571at 576.815 kb on - strand, within B158DRAFT_0571at 576.815 kb on - strand, within B158DRAFT_0571at 576.952 kb on + strand, within B158DRAFT_0571at 577.078 kb on + strandat 577.103 kb on + strandat 577.383 kb on - strand, within B158DRAFT_0572at 577.383 kb on - strand, within B158DRAFT_0572at 577.526 kb on + strand, within B158DRAFT_0572at 577.560 kb on - strand, within B158DRAFT_0572at 577.680 kb on - strand, within B158DRAFT_0572at 577.694 kb on + strand, within B158DRAFT_0572at 577.704 kb on + strand, within B158DRAFT_0572at 577.704 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.712 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.766 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.809 kb on + strand, within B158DRAFT_0572at 577.817 kb on - strand, within B158DRAFT_0572at 577.835 kb on - strandat 577.837 kb on + strandat 577.837 kb on + strandat 577.866 kb on - strandat 577.890 kb on - strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.948 kb on + strand, within B158DRAFT_0573at 577.948 kb on + strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.995 kb on - strand, within B158DRAFT_0573at 577.997 kb on + strand, within B158DRAFT_0573at 578.086 kb on - strand, within B158DRAFT_0573at 578.098 kb on + strand, within B158DRAFT_0573at 578.098 kb on + strand, within B158DRAFT_0573at 578.239 kb on + strand, within B158DRAFT_0573at 578.400 kb on - strandat 578.572 kb on + strand, within B158DRAFT_0574at 578.580 kb on - strand, within B158DRAFT_0574

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 15 mM
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576,243 - -0.6
576,251 - -0.2
576,251 - +0.1
576,373 + B158DRAFT_0571 0.17 +1.1
576,383 + B158DRAFT_0571 0.18 -0.3
576,466 + B158DRAFT_0571 0.27 -0.1
576,474 - B158DRAFT_0571 0.28 -0.2
576,527 + B158DRAFT_0571 0.34 -0.8
576,543 - B158DRAFT_0571 0.35 +0.8
576,543 - B158DRAFT_0571 0.35 +0.7
576,687 - B158DRAFT_0571 0.51 +0.2
576,721 - B158DRAFT_0571 0.55 -0.1
576,729 + B158DRAFT_0571 0.56 -0.3
576,729 + B158DRAFT_0571 0.56 -0.2
576,729 + B158DRAFT_0571 0.56 -0.1
576,729 + B158DRAFT_0571 0.56 -0.6
576,737 - B158DRAFT_0571 0.56 -0.4
576,737 - B158DRAFT_0571 0.56 -0.9
576,737 - B158DRAFT_0571 0.56 +0.1
576,769 - B158DRAFT_0571 0.60 -0.3
576,815 - B158DRAFT_0571 0.65 -0.1
576,815 - B158DRAFT_0571 0.65 -0.2
576,952 + B158DRAFT_0571 0.80 -0.1
577,078 + -0.5
577,103 + -0.2
577,383 - B158DRAFT_0572 0.26 -0.6
577,383 - B158DRAFT_0572 0.26 -0.2
577,526 + B158DRAFT_0572 0.46 +0.2
577,560 - B158DRAFT_0572 0.51 +0.1
577,680 - B158DRAFT_0572 0.68 -0.8
577,694 + B158DRAFT_0572 0.70 +0.0
577,704 + B158DRAFT_0572 0.72 -0.2
577,704 + B158DRAFT_0572 0.72 +0.1
577,709 + B158DRAFT_0572 0.73 -0.2
577,709 + B158DRAFT_0572 0.73 -0.3
577,709 + B158DRAFT_0572 0.73 +0.7
577,709 + B158DRAFT_0572 0.73 -3.4
577,709 + B158DRAFT_0572 0.73 +0.2
577,712 - B158DRAFT_0572 0.73 -0.5
577,717 - B158DRAFT_0572 0.74 -0.4
577,717 - B158DRAFT_0572 0.74 -0.1
577,717 - B158DRAFT_0572 0.74 +1.7
577,717 - B158DRAFT_0572 0.74 -0.8
577,717 - B158DRAFT_0572 0.74 +0.1
577,766 + B158DRAFT_0572 0.81 -0.6
577,794 + B158DRAFT_0572 0.85 +0.0
577,794 + B158DRAFT_0572 0.85 -0.3
577,794 + B158DRAFT_0572 0.85 -0.2
577,794 + B158DRAFT_0572 0.85 -0.1
577,802 - B158DRAFT_0572 0.86 -0.2
577,802 - B158DRAFT_0572 0.86 -0.2
577,802 - B158DRAFT_0572 0.86 -0.2
577,802 - B158DRAFT_0572 0.86 +0.1
577,802 - B158DRAFT_0572 0.86 -0.8
577,809 + B158DRAFT_0572 0.87 -0.4
577,817 - B158DRAFT_0572 0.88 +1.3
577,835 - +0.2
577,837 + -0.1
577,837 + -0.1
577,866 - -0.4
577,890 - -0.0
577,900 + +0.2
577,900 + +0.2
577,900 + -0.1
577,900 + -0.2
577,900 + +0.1
577,900 + +0.3
577,900 + -0.5
577,908 - -0.2
577,908 - -0.0
577,908 - +0.3
577,908 - -0.3
577,908 - -0.1
577,908 - +0.8
577,908 - +0.3
577,948 + B158DRAFT_0573 0.12 +0.7
577,948 + B158DRAFT_0573 0.12 +1.0
577,956 - B158DRAFT_0573 0.14 +0.6
577,956 - B158DRAFT_0573 0.14 +0.6
577,956 - B158DRAFT_0573 0.14 +0.7
577,956 - B158DRAFT_0573 0.14 +1.4
577,995 - B158DRAFT_0573 0.24 +0.5
577,997 + B158DRAFT_0573 0.25 +1.2
578,086 - B158DRAFT_0573 0.48 +0.4
578,098 + B158DRAFT_0573 0.51 +1.0
578,098 + B158DRAFT_0573 0.51 +0.9
578,239 + B158DRAFT_0573 0.87 +0.8
578,400 - -0.2
578,572 + B158DRAFT_0574 0.12 +1.4
578,580 - B158DRAFT_0574 0.12 +1.2

Or see this region's nucleotide sequence