Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3707

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3706 and PfGW456L13_3707 overlap by 4 nucleotidesPfGW456L13_3707 and PfGW456L13_3708 overlap by 4 nucleotides PfGW456L13_3706 - Heavy metal RND efflux outer membrane protein, CzcC family, at 4,167,648 to 4,168,904 _3706 PfGW456L13_3707 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family, at 4,168,901 to 4,170,385 _3707 PfGW456L13_3708 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 4,170,382 to 4,173,540 _3708 Position (kb) 4168 4169 4170 4171Strain fitness (log2 ratio) -2 -1 0 1 2at 4168.052 kb on - strand, within PfGW456L13_3706at 4168.052 kb on - strand, within PfGW456L13_3706at 4168.052 kb on - strand, within PfGW456L13_3706at 4168.086 kb on + strand, within PfGW456L13_3706at 4168.086 kb on + strand, within PfGW456L13_3706at 4168.087 kb on - strand, within PfGW456L13_3706at 4168.087 kb on - strand, within PfGW456L13_3706at 4168.087 kb on - strand, within PfGW456L13_3706at 4168.126 kb on - strand, within PfGW456L13_3706at 4168.126 kb on - strand, within PfGW456L13_3706at 4168.126 kb on - strand, within PfGW456L13_3706at 4168.126 kb on - strand, within PfGW456L13_3706at 4168.126 kb on - strand, within PfGW456L13_3706at 4168.126 kb on - strand, within PfGW456L13_3706at 4168.360 kb on - strand, within PfGW456L13_3706at 4168.367 kb on + strand, within PfGW456L13_3706at 4168.483 kb on - strand, within PfGW456L13_3706at 4168.483 kb on - strand, within PfGW456L13_3706at 4168.483 kb on - strand, within PfGW456L13_3706at 4168.671 kb on + strand, within PfGW456L13_3706at 4168.694 kb on - strand, within PfGW456L13_3706at 4168.758 kb on + strand, within PfGW456L13_3706at 4168.780 kb on + strandat 4168.781 kb on - strandat 4168.875 kb on + strandat 4169.002 kb on - strandat 4169.002 kb on - strandat 4169.002 kb on - strandat 4169.057 kb on + strand, within PfGW456L13_3707at 4169.057 kb on + strand, within PfGW456L13_3707at 4169.057 kb on + strand, within PfGW456L13_3707at 4169.058 kb on - strand, within PfGW456L13_3707at 4169.058 kb on - strand, within PfGW456L13_3707at 4169.058 kb on - strand, within PfGW456L13_3707at 4169.058 kb on - strand, within PfGW456L13_3707at 4169.063 kb on + strand, within PfGW456L13_3707at 4169.064 kb on - strand, within PfGW456L13_3707at 4169.064 kb on - strand, within PfGW456L13_3707at 4169.075 kb on + strand, within PfGW456L13_3707at 4169.075 kb on + strand, within PfGW456L13_3707at 4169.075 kb on + strand, within PfGW456L13_3707at 4169.076 kb on - strand, within PfGW456L13_3707at 4169.076 kb on - strand, within PfGW456L13_3707at 4169.298 kb on + strand, within PfGW456L13_3707at 4169.308 kb on + strand, within PfGW456L13_3707at 4169.308 kb on + strand, within PfGW456L13_3707at 4169.309 kb on - strand, within PfGW456L13_3707at 4169.309 kb on - strandat 4169.309 kb on - strand, within PfGW456L13_3707at 4169.333 kb on + strand, within PfGW456L13_3707at 4169.334 kb on - strand, within PfGW456L13_3707at 4169.517 kb on + strand, within PfGW456L13_3707at 4169.518 kb on - strand, within PfGW456L13_3707at 4169.518 kb on - strand, within PfGW456L13_3707at 4169.518 kb on - strand, within PfGW456L13_3707at 4169.592 kb on + strand, within PfGW456L13_3707at 4169.592 kb on + strand, within PfGW456L13_3707at 4169.592 kb on + strand, within PfGW456L13_3707at 4169.592 kb on + strand, within PfGW456L13_3707at 4169.592 kb on + strand, within PfGW456L13_3707at 4169.593 kb on - strand, within PfGW456L13_3707at 4169.593 kb on - strand, within PfGW456L13_3707at 4169.593 kb on - strand, within PfGW456L13_3707at 4169.593 kb on - strand, within PfGW456L13_3707at 4169.602 kb on + strand, within PfGW456L13_3707at 4169.602 kb on + strand, within PfGW456L13_3707at 4169.602 kb on + strand, within PfGW456L13_3707at 4169.603 kb on - strand, within PfGW456L13_3707at 4169.811 kb on + strand, within PfGW456L13_3707at 4169.811 kb on + strand, within PfGW456L13_3707at 4169.811 kb on + strand, within PfGW456L13_3707at 4169.812 kb on - strand, within PfGW456L13_3707at 4169.911 kb on + strand, within PfGW456L13_3707at 4169.911 kb on + strand, within PfGW456L13_3707at 4169.950 kb on - strand, within PfGW456L13_3707at 4170.061 kb on + strand, within PfGW456L13_3707at 4170.061 kb on + strand, within PfGW456L13_3707at 4170.062 kb on - strand, within PfGW456L13_3707at 4170.115 kb on + strand, within PfGW456L13_3707at 4170.116 kb on - strand, within PfGW456L13_3707at 4170.205 kb on + strand, within PfGW456L13_3707at 4170.206 kb on - strand, within PfGW456L13_3707at 4170.206 kb on - strand, within PfGW456L13_3707at 4170.431 kb on + strandat 4170.538 kb on + strandat 4170.539 kb on - strandat 4170.539 kb on - strandat 4170.580 kb on + strandat 4170.580 kb on + strandat 4170.580 kb on + strandat 4170.662 kb on - strandat 4170.691 kb on + strandat 4170.692 kb on - strandat 4170.719 kb on - strand, within PfGW456L13_3708at 4170.731 kb on + strand, within PfGW456L13_3708at 4170.799 kb on + strand, within PfGW456L13_3708at 4170.799 kb on + strand, within PfGW456L13_3708at 4170.799 kb on + strand, within PfGW456L13_3708at 4170.799 kb on + strand, within PfGW456L13_3708at 4170.805 kb on + strand, within PfGW456L13_3708at 4170.805 kb on + strand, within PfGW456L13_3708at 4170.806 kb on - strand, within PfGW456L13_3708at 4170.940 kb on + strand, within PfGW456L13_3708at 4170.941 kb on - strand, within PfGW456L13_3708at 4171.355 kb on - strand, within PfGW456L13_3708

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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4,168,052 - PfGW456L13_3706 0.32 -2.6
4,168,052 - PfGW456L13_3706 0.32 -0.8
4,168,052 - PfGW456L13_3706 0.32 +0.1
4,168,086 + PfGW456L13_3706 0.35 -0.1
4,168,086 + PfGW456L13_3706 0.35 -0.8
4,168,087 - PfGW456L13_3706 0.35 -1.0
4,168,087 - PfGW456L13_3706 0.35 -0.5
4,168,087 - PfGW456L13_3706 0.35 -0.3
4,168,126 - PfGW456L13_3706 0.38 -1.1
4,168,126 - PfGW456L13_3706 0.38 -0.6
4,168,126 - PfGW456L13_3706 0.38 +1.4
4,168,126 - PfGW456L13_3706 0.38 -0.7
4,168,126 - PfGW456L13_3706 0.38 -0.6
4,168,126 - PfGW456L13_3706 0.38 -0.4
4,168,360 - PfGW456L13_3706 0.57 -1.8
4,168,367 + PfGW456L13_3706 0.57 -0.0
4,168,483 - PfGW456L13_3706 0.66 +0.3
4,168,483 - PfGW456L13_3706 0.66 +0.5
4,168,483 - PfGW456L13_3706 0.66 -1.7
4,168,671 + PfGW456L13_3706 0.81 -1.9
4,168,694 - PfGW456L13_3706 0.83 -1.9
4,168,758 + PfGW456L13_3706 0.88 +0.4
4,168,780 + +0.4
4,168,781 - +0.7
4,168,875 + -0.3
4,169,002 - +0.8
4,169,002 - -0.6
4,169,002 - +0.7
4,169,057 + PfGW456L13_3707 0.11 +1.1
4,169,057 + PfGW456L13_3707 0.11 -0.8
4,169,057 + PfGW456L13_3707 0.11 +1.2
4,169,058 - PfGW456L13_3707 0.11 +0.1
4,169,058 - PfGW456L13_3707 0.11 -0.1
4,169,058 - PfGW456L13_3707 0.11 -2.5
4,169,058 - PfGW456L13_3707 0.11 +0.3
4,169,063 + PfGW456L13_3707 0.11 -0.6
4,169,064 - PfGW456L13_3707 0.11 -0.0
4,169,064 - PfGW456L13_3707 0.11 -0.1
4,169,075 + PfGW456L13_3707 0.12 +0.9
4,169,075 + PfGW456L13_3707 0.12 -0.2
4,169,075 + PfGW456L13_3707 0.12 +1.2
4,169,076 - PfGW456L13_3707 0.12 +1.1
4,169,076 - PfGW456L13_3707 0.12 +0.9
4,169,298 + PfGW456L13_3707 0.27 +0.2
4,169,308 + PfGW456L13_3707 0.27 +2.0
4,169,308 + PfGW456L13_3707 0.27 +0.1
4,169,309 - PfGW456L13_3707 0.27 +1.2
4,169,309 - +1.7
4,169,309 - PfGW456L13_3707 0.27 +0.2
4,169,333 + PfGW456L13_3707 0.29 -0.5
4,169,334 - PfGW456L13_3707 0.29 +0.7
4,169,517 + PfGW456L13_3707 0.41 -1.3
4,169,518 - PfGW456L13_3707 0.42 +0.1
4,169,518 - PfGW456L13_3707 0.42 +0.0
4,169,518 - PfGW456L13_3707 0.42 -0.6
4,169,592 + PfGW456L13_3707 0.47 +0.9
4,169,592 + PfGW456L13_3707 0.47 -0.9
4,169,592 + PfGW456L13_3707 0.47 -0.6
4,169,592 + PfGW456L13_3707 0.47 +0.3
4,169,592 + PfGW456L13_3707 0.47 -0.4
4,169,593 - PfGW456L13_3707 0.47 -0.1
4,169,593 - PfGW456L13_3707 0.47 +2.7
4,169,593 - PfGW456L13_3707 0.47 +1.4
4,169,593 - PfGW456L13_3707 0.47 +0.3
4,169,602 + PfGW456L13_3707 0.47 -0.8
4,169,602 + PfGW456L13_3707 0.47 +0.5
4,169,602 + PfGW456L13_3707 0.47 -1.0
4,169,603 - PfGW456L13_3707 0.47 -0.5
4,169,811 + PfGW456L13_3707 0.61 +0.5
4,169,811 + PfGW456L13_3707 0.61 +0.5
4,169,811 + PfGW456L13_3707 0.61 +0.2
4,169,812 - PfGW456L13_3707 0.61 -0.6
4,169,911 + PfGW456L13_3707 0.68 +0.3
4,169,911 + PfGW456L13_3707 0.68 +0.2
4,169,950 - PfGW456L13_3707 0.71 +0.6
4,170,061 + PfGW456L13_3707 0.78 -0.3
4,170,061 + PfGW456L13_3707 0.78 -0.9
4,170,062 - PfGW456L13_3707 0.78 +0.7
4,170,115 + PfGW456L13_3707 0.82 +0.7
4,170,116 - PfGW456L13_3707 0.82 -0.2
4,170,205 + PfGW456L13_3707 0.88 -1.1
4,170,206 - PfGW456L13_3707 0.88 -1.3
4,170,206 - PfGW456L13_3707 0.88 -0.4
4,170,431 + -0.5
4,170,538 + +0.9
4,170,539 - -0.4
4,170,539 - -0.8
4,170,580 + -0.7
4,170,580 + +0.3
4,170,580 + +0.1
4,170,662 - +0.0
4,170,691 + -1.3
4,170,692 - +0.3
4,170,719 - PfGW456L13_3708 0.11 -0.1
4,170,731 + PfGW456L13_3708 0.11 -0.9
4,170,799 + PfGW456L13_3708 0.13 +0.0
4,170,799 + PfGW456L13_3708 0.13 -1.9
4,170,799 + PfGW456L13_3708 0.13 +0.1
4,170,799 + PfGW456L13_3708 0.13 +0.0
4,170,805 + PfGW456L13_3708 0.13 +1.8
4,170,805 + PfGW456L13_3708 0.13 +1.1
4,170,806 - PfGW456L13_3708 0.13 +0.8
4,170,940 + PfGW456L13_3708 0.18 +0.8
4,170,941 - PfGW456L13_3708 0.18 -0.9
4,171,355 - PfGW456L13_3708 0.31 -1.0

Or see this region's nucleotide sequence