Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3293

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3290 and Echvi_3291 are separated by 190 nucleotidesEchvi_3291 and Echvi_3292 are separated by 28 nucleotidesEchvi_3292 and Echvi_3293 are separated by 129 nucleotidesEchvi_3293 and Echvi_3294 are separated by 70 nucleotides Echvi_3290: Echvi_3290 - Fatty-acid desaturase, at 3,894,315 to 3,895,064 _3290 Echvi_3291: Echvi_3291 - Predicted membrane protein, at 3,895,255 to 3,895,626 _3291 Echvi_3292: Echvi_3292 - hypothetical protein, at 3,895,655 to 3,895,813 _3292 Echvi_3293: Echvi_3293 - hypothetical protein, at 3,895,943 to 3,896,500 _3293 Echvi_3294: Echvi_3294 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 3,896,571 to 3,897,473 _3294 Position (kb) 3895 3896 3897Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3895.050 kb on + strandat 3895.059 kb on + strandat 3895.060 kb on - strandat 3895.060 kb on - strandat 3895.084 kb on - strandat 3895.155 kb on + strandat 3895.155 kb on + strandat 3895.156 kb on - strandat 3895.156 kb on - strandat 3895.186 kb on + strandat 3895.186 kb on + strandat 3895.186 kb on + strandat 3895.187 kb on - strandat 3895.187 kb on - strandat 3895.187 kb on - strandat 3895.187 kb on - strandat 3895.206 kb on + strandat 3895.207 kb on - strandat 3895.209 kb on + strandat 3895.209 kb on + strandat 3895.210 kb on - strandat 3895.254 kb on + strandat 3895.255 kb on - strandat 3895.272 kb on + strandat 3895.273 kb on - strandat 3895.273 kb on - strandat 3895.281 kb on + strandat 3895.323 kb on + strand, within Echvi_3291at 3895.323 kb on + strand, within Echvi_3291at 3895.326 kb on + strand, within Echvi_3291at 3895.327 kb on - strand, within Echvi_3291at 3895.349 kb on + strand, within Echvi_3291at 3895.350 kb on - strand, within Echvi_3291at 3895.350 kb on - strand, within Echvi_3291at 3895.351 kb on + strand, within Echvi_3291at 3895.351 kb on + strand, within Echvi_3291at 3895.351 kb on + strand, within Echvi_3291at 3895.351 kb on + strand, within Echvi_3291at 3895.351 kb on + strand, within Echvi_3291at 3895.352 kb on - strand, within Echvi_3291at 3895.352 kb on - strand, within Echvi_3291at 3895.352 kb on - strand, within Echvi_3291at 3895.352 kb on - strand, within Echvi_3291at 3895.352 kb on - strand, within Echvi_3291at 3895.352 kb on - strand, within Echvi_3291at 3895.352 kb on - strand, within Echvi_3291at 3895.408 kb on + strand, within Echvi_3291at 3895.408 kb on + strand, within Echvi_3291at 3895.410 kb on + strand, within Echvi_3291at 3895.411 kb on - strand, within Echvi_3291at 3895.416 kb on - strand, within Echvi_3291at 3895.416 kb on - strand, within Echvi_3291at 3895.485 kb on + strand, within Echvi_3291at 3895.485 kb on + strand, within Echvi_3291at 3895.486 kb on - strand, within Echvi_3291at 3895.486 kb on - strand, within Echvi_3291at 3895.502 kb on + strand, within Echvi_3291at 3895.569 kb on + strand, within Echvi_3291at 3895.570 kb on - strand, within Echvi_3291at 3895.643 kb on + strandat 3895.644 kb on - strandat 3895.682 kb on + strand, within Echvi_3292at 3895.683 kb on - strand, within Echvi_3292at 3895.822 kb on - strandat 3895.897 kb on - strandat 3895.915 kb on + strandat 3895.922 kb on + strandat 3895.923 kb on - strandat 3895.938 kb on + strandat 3895.942 kb on + strandat 3895.942 kb on + strandat 3895.942 kb on + strandat 3895.942 kb on + strandat 3895.942 kb on + strandat 3895.942 kb on + strandat 3895.942 kb on + strandat 3895.943 kb on - strandat 3895.943 kb on - strandat 3895.947 kb on + strandat 3895.947 kb on + strandat 3895.947 kb on + strandat 3895.951 kb on + strandat 3896.001 kb on + strand, within Echvi_3293at 3896.021 kb on + strand, within Echvi_3293at 3896.022 kb on - strand, within Echvi_3293at 3896.028 kb on + strand, within Echvi_3293at 3896.104 kb on - strand, within Echvi_3293at 3896.105 kb on + strand, within Echvi_3293at 3896.106 kb on - strand, within Echvi_3293at 3896.106 kb on - strand, within Echvi_3293at 3896.106 kb on - strand, within Echvi_3293at 3896.123 kb on - strand, within Echvi_3293at 3896.133 kb on + strand, within Echvi_3293at 3896.133 kb on + strand, within Echvi_3293at 3896.134 kb on - strand, within Echvi_3293at 3896.170 kb on + strand, within Echvi_3293at 3896.170 kb on + strand, within Echvi_3293at 3896.171 kb on - strand, within Echvi_3293at 3896.171 kb on - strand, within Echvi_3293at 3896.171 kb on - strand, within Echvi_3293at 3896.231 kb on - strand, within Echvi_3293at 3896.276 kb on - strand, within Echvi_3293at 3896.276 kb on - strand, within Echvi_3293at 3896.277 kb on + strand, within Echvi_3293at 3896.322 kb on + strand, within Echvi_3293at 3896.333 kb on - strand, within Echvi_3293at 3896.344 kb on + strand, within Echvi_3293at 3896.396 kb on - strand, within Echvi_3293at 3896.443 kb on + strand, within Echvi_3293at 3896.443 kb on + strand, within Echvi_3293at 3896.444 kb on - strand, within Echvi_3293at 3896.444 kb on - strand, within Echvi_3293at 3896.489 kb on - strandat 3896.498 kb on + strandat 3896.499 kb on - strandat 3896.499 kb on - strandat 3896.499 kb on - strandat 3896.518 kb on + strandat 3896.519 kb on - strandat 3896.558 kb on + strandat 3896.566 kb on + strandat 3896.566 kb on + strandat 3896.567 kb on - strandat 3896.567 kb on - strandat 3896.570 kb on + strandat 3896.571 kb on - strandat 3896.575 kb on + strandat 3896.575 kb on + strandat 3896.575 kb on + strandat 3896.599 kb on - strandat 3896.624 kb on + strandat 3896.624 kb on + strandat 3896.625 kb on - strandat 3896.670 kb on + strand, within Echvi_3294at 3896.670 kb on + strand, within Echvi_3294at 3896.670 kb on + strand, within Echvi_3294at 3896.671 kb on - strand, within Echvi_3294at 3896.708 kb on + strand, within Echvi_3294at 3896.709 kb on - strand, within Echvi_3294at 3896.754 kb on + strand, within Echvi_3294at 3896.769 kb on - strand, within Echvi_3294at 3896.819 kb on - strand, within Echvi_3294at 3896.900 kb on - strand, within Echvi_3294at 3896.991 kb on + strand, within Echvi_3294at 3896.992 kb on - strand, within Echvi_3294at 3897.096 kb on - strand, within Echvi_3294at 3897.204 kb on - strand, within Echvi_3294at 3897.255 kb on + strand, within Echvi_3294at 3897.255 kb on + strand, within Echvi_3294at 3897.255 kb on + strand, within Echvi_3294at 3897.256 kb on - strandat 3897.256 kb on - strand, within Echvi_3294at 3897.256 kb on - strand, within Echvi_3294at 3897.256 kb on - strand, within Echvi_3294at 3897.256 kb on - strand, within Echvi_3294at 3897.256 kb on - strand, within Echvi_3294at 3897.256 kb on - strand, within Echvi_3294at 3897.324 kb on - strand, within Echvi_3294at 3897.499 kb on + strandat 3897.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,895,050 + -0.1
3,895,059 + +0.7
3,895,060 - +0.8
3,895,060 - -0.8
3,895,084 - -1.4
3,895,155 + +0.2
3,895,155 + +0.4
3,895,156 - +1.6
3,895,156 - +0.0
3,895,186 + +0.1
3,895,186 + +0.5
3,895,186 + -0.1
3,895,187 - +0.2
3,895,187 - -2.4
3,895,187 - +0.9
3,895,187 - +0.3
3,895,206 + +0.5
3,895,207 - -0.2
3,895,209 + -0.3
3,895,209 + +0.8
3,895,210 - -0.3
3,895,254 + +0.1
3,895,255 - -1.2
3,895,272 + +0.5
3,895,273 - +0.4
3,895,273 - +0.4
3,895,281 + -0.0
3,895,323 + Echvi_3291 0.18 -0.3
3,895,323 + Echvi_3291 0.18 -0.5
3,895,326 + Echvi_3291 0.19 -0.3
3,895,327 - Echvi_3291 0.19 +2.1
3,895,349 + Echvi_3291 0.25 +1.5
3,895,350 - Echvi_3291 0.26 +0.6
3,895,350 - Echvi_3291 0.26 +1.2
3,895,351 + Echvi_3291 0.26 +0.4
3,895,351 + Echvi_3291 0.26 -0.1
3,895,351 + Echvi_3291 0.26 +0.1
3,895,351 + Echvi_3291 0.26 +0.9
3,895,351 + Echvi_3291 0.26 -1.3
3,895,352 - Echvi_3291 0.26 -0.7
3,895,352 - Echvi_3291 0.26 -0.5
3,895,352 - Echvi_3291 0.26 -0.2
3,895,352 - Echvi_3291 0.26 -0.8
3,895,352 - Echvi_3291 0.26 +0.7
3,895,352 - Echvi_3291 0.26 -0.4
3,895,352 - Echvi_3291 0.26 -0.3
3,895,408 + Echvi_3291 0.41 +0.6
3,895,408 + Echvi_3291 0.41 -1.5
3,895,410 + Echvi_3291 0.42 -0.5
3,895,411 - Echvi_3291 0.42 +1.2
3,895,416 - Echvi_3291 0.43 -1.1
3,895,416 - Echvi_3291 0.43 +0.0
3,895,485 + Echvi_3291 0.62 +0.5
3,895,485 + Echvi_3291 0.62 +1.4
3,895,486 - Echvi_3291 0.62 +0.5
3,895,486 - Echvi_3291 0.62 -1.3
3,895,502 + Echvi_3291 0.66 -0.1
3,895,569 + Echvi_3291 0.84 +0.3
3,895,570 - Echvi_3291 0.85 -0.8
3,895,643 + +0.1
3,895,644 - -0.7
3,895,682 + Echvi_3292 0.17 +0.0
3,895,683 - Echvi_3292 0.18 +0.2
3,895,822 - +0.2
3,895,897 - -1.5
3,895,915 + -0.9
3,895,922 + -1.2
3,895,923 - +0.1
3,895,938 + -0.1
3,895,942 + +0.1
3,895,942 + +0.0
3,895,942 + -0.3
3,895,942 + +0.9
3,895,942 + +0.2
3,895,942 + -1.3
3,895,942 + +0.5
3,895,943 - -1.3
3,895,943 - +1.0
3,895,947 + -0.3
3,895,947 + -0.2
3,895,947 + -1.4
3,895,951 + +0.1
3,896,001 + Echvi_3293 0.10 -0.1
3,896,021 + Echvi_3293 0.14 -0.2
3,896,022 - Echvi_3293 0.14 -0.2
3,896,028 + Echvi_3293 0.15 +1.2
3,896,104 - Echvi_3293 0.29 +0.3
3,896,105 + Echvi_3293 0.29 -0.1
3,896,106 - Echvi_3293 0.29 -0.9
3,896,106 - Echvi_3293 0.29 -0.4
3,896,106 - Echvi_3293 0.29 +0.2
3,896,123 - Echvi_3293 0.32 +2.4
3,896,133 + Echvi_3293 0.34 +0.1
3,896,133 + Echvi_3293 0.34 -2.8
3,896,134 - Echvi_3293 0.34 +1.8
3,896,170 + Echvi_3293 0.41 -0.8
3,896,170 + Echvi_3293 0.41 -1.1
3,896,171 - Echvi_3293 0.41 +0.6
3,896,171 - Echvi_3293 0.41 -0.8
3,896,171 - Echvi_3293 0.41 -0.3
3,896,231 - Echvi_3293 0.52 +1.4
3,896,276 - Echvi_3293 0.60 -0.4
3,896,276 - Echvi_3293 0.60 -0.5
3,896,277 + Echvi_3293 0.60 -0.5
3,896,322 + Echvi_3293 0.68 +0.2
3,896,333 - Echvi_3293 0.70 -0.4
3,896,344 + Echvi_3293 0.72 -0.8
3,896,396 - Echvi_3293 0.81 +0.7
3,896,443 + Echvi_3293 0.90 -1.3
3,896,443 + Echvi_3293 0.90 -0.8
3,896,444 - Echvi_3293 0.90 -0.1
3,896,444 - Echvi_3293 0.90 +1.4
3,896,489 - -1.3
3,896,498 + -0.6
3,896,499 - -0.8
3,896,499 - -0.8
3,896,499 - -0.2
3,896,518 + -1.9
3,896,519 - -1.6
3,896,558 + -0.7
3,896,566 + +1.1
3,896,566 + +0.2
3,896,567 - +0.4
3,896,567 - -0.3
3,896,570 + +0.2
3,896,571 - -1.1
3,896,575 + -0.8
3,896,575 + +0.2
3,896,575 + -1.7
3,896,599 - -2.6
3,896,624 + +0.1
3,896,624 + -0.9
3,896,625 - -0.6
3,896,670 + Echvi_3294 0.11 +0.2
3,896,670 + Echvi_3294 0.11 +0.3
3,896,670 + Echvi_3294 0.11 -0.9
3,896,671 - Echvi_3294 0.11 +0.7
3,896,708 + Echvi_3294 0.15 +1.0
3,896,709 - Echvi_3294 0.15 -0.5
3,896,754 + Echvi_3294 0.20 -0.5
3,896,769 - Echvi_3294 0.22 -1.5
3,896,819 - Echvi_3294 0.27 -0.8
3,896,900 - Echvi_3294 0.36 +0.5
3,896,991 + Echvi_3294 0.47 -0.8
3,896,992 - Echvi_3294 0.47 -0.5
3,897,096 - Echvi_3294 0.58 +1.0
3,897,204 - Echvi_3294 0.70 +0.4
3,897,255 + Echvi_3294 0.76 -1.5
3,897,255 + Echvi_3294 0.76 +1.1
3,897,255 + Echvi_3294 0.76 -2.1
3,897,256 - +0.8
3,897,256 - Echvi_3294 0.76 -1.0
3,897,256 - Echvi_3294 0.76 -0.1
3,897,256 - Echvi_3294 0.76 +0.1
3,897,256 - Echvi_3294 0.76 -1.4
3,897,256 - Echvi_3294 0.76 -1.0
3,897,256 - Echvi_3294 0.76 +0.1
3,897,324 - Echvi_3294 0.83 +0.0
3,897,499 + +0.6
3,897,500 - -0.6

Or see this region's nucleotide sequence