Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1811 and Echvi_1812 are separated by 57 nucleotides Echvi_1812 and Echvi_1813 are separated by 75 nucleotides Echvi_1813 and Echvi_1814 are separated by 47 nucleotides
Echvi_1811: Echvi_1811 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 2,130,213 to 2,131,268
_1811
Echvi_1812: Echvi_1812 - membrane protein, MarC family, at 2,131,326 to 2,131,904
_1812
Echvi_1813: Echvi_1813 - Ribonuclease HI, at 2,131,980 to 2,132,432
_1813
Echvi_1814: Echvi_1814 - Predicted O-methyltransferase, at 2,132,480 to 2,133,199
_1814
Position (kb)
2131
2132 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2131.267 kb on - strand at 2131.267 kb on - strand at 2131.324 kb on + strand at 2131.324 kb on + strand at 2131.382 kb on + strand at 2131.403 kb on + strand, within Echvi_1812 at 2131.404 kb on - strand, within Echvi_1812 at 2131.404 kb on - strand, within Echvi_1812 at 2131.468 kb on + strand, within Echvi_1812 at 2131.730 kb on - strand, within Echvi_1812 at 2131.902 kb on + strand at 2131.910 kb on + strand at 2131.911 kb on - strand at 2131.911 kb on - strand at 2131.914 kb on + strand at 2131.915 kb on - strand at 2131.935 kb on + strand at 2131.936 kb on - strand at 2131.994 kb on + strand at 2132.116 kb on + strand, within Echvi_1813 at 2132.153 kb on - strand, within Echvi_1813 at 2132.153 kb on - strand, within Echvi_1813 at 2132.440 kb on - strand at 2132.440 kb on - strand at 2132.492 kb on + strand at 2132.512 kb on + strand at 2132.513 kb on - strand at 2132.513 kb on - strand at 2132.596 kb on + strand, within Echvi_1814 at 2132.620 kb on + strand, within Echvi_1814 at 2132.621 kb on - strand, within Echvi_1814 at 2132.665 kb on + strand, within Echvi_1814 at 2132.670 kb on + strand, within Echvi_1814 at 2132.670 kb on + strand, within Echvi_1814 at 2132.670 kb on + strand, within Echvi_1814 at 2132.754 kb on + strand, within Echvi_1814 at 2132.755 kb on - strand, within Echvi_1814 at 2132.828 kb on + strand, within Echvi_1814 at 2132.846 kb on - strand, within Echvi_1814 at 2132.846 kb on - strand, within Echvi_1814
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,131,267 - +0.5 2,131,267 - -1.3 2,131,324 + -0.0 2,131,324 + +1.7 2,131,382 + +2.0 2,131,403 + Echvi_1812 0.13 -3.2 2,131,404 - Echvi_1812 0.13 -2.4 2,131,404 - Echvi_1812 0.13 -1.2 2,131,468 + Echvi_1812 0.25 -2.6 2,131,730 - Echvi_1812 0.70 -2.7 2,131,902 + -1.0 2,131,910 + +0.7 2,131,911 - -1.5 2,131,911 - -3.9 2,131,914 + +0.3 2,131,915 - -1.4 2,131,935 + +0.4 2,131,936 - -1.6 2,131,994 + -0.0 2,132,116 + Echvi_1813 0.30 +1.3 2,132,153 - Echvi_1813 0.38 -0.8 2,132,153 - Echvi_1813 0.38 -0.8 2,132,440 - -0.4 2,132,440 - +0.4 2,132,492 + +0.9 2,132,512 + +1.0 2,132,513 - -3.2 2,132,513 - +0.7 2,132,596 + Echvi_1814 0.16 +0.5 2,132,620 + Echvi_1814 0.19 +0.1 2,132,621 - Echvi_1814 0.20 -1.6 2,132,665 + Echvi_1814 0.26 -0.3 2,132,670 + Echvi_1814 0.26 +1.0 2,132,670 + Echvi_1814 0.26 +0.9 2,132,670 + Echvi_1814 0.26 +1.6 2,132,754 + Echvi_1814 0.38 -0.9 2,132,755 - Echvi_1814 0.38 -0.2 2,132,828 + Echvi_1814 0.48 -0.6 2,132,846 - Echvi_1814 0.51 -0.2 2,132,846 - Echvi_1814 0.51 -0.0
Or see this region's nucleotide sequence