Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1662

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1661 and Echvi_1662 are separated by 39 nucleotidesEchvi_1662 and Echvi_1663 overlap by 8 nucleotides Echvi_1661: Echvi_1661 - hypothetical protein, at 1,929,668 to 1,932,388 _1661 Echvi_1662: Echvi_1662 - hypothetical protein, at 1,932,428 to 1,932,619 _1662 Echvi_1663: Echvi_1663 - hypothetical protein, at 1,932,612 to 1,933,925 _1663 Position (kb) 1932 1933Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1931.521 kb on + strand, within Echvi_1661at 1931.522 kb on - strand, within Echvi_1661at 1931.553 kb on + strand, within Echvi_1661at 1931.553 kb on + strand, within Echvi_1661at 1931.615 kb on + strand, within Echvi_1661at 1931.615 kb on + strand, within Echvi_1661at 1931.619 kb on - strand, within Echvi_1661at 1931.713 kb on - strand, within Echvi_1661at 1931.757 kb on + strand, within Echvi_1661at 1931.757 kb on + strand, within Echvi_1661at 1931.757 kb on + strand, within Echvi_1661at 1931.758 kb on - strand, within Echvi_1661at 1931.758 kb on - strand, within Echvi_1661at 1931.759 kb on + strand, within Echvi_1661at 1931.760 kb on - strand, within Echvi_1661at 1931.780 kb on + strand, within Echvi_1661at 1931.780 kb on + strand, within Echvi_1661at 1931.782 kb on + strand, within Echvi_1661at 1931.782 kb on + strand, within Echvi_1661at 1931.783 kb on - strand, within Echvi_1661at 1931.783 kb on - strand, within Echvi_1661at 1932.029 kb on - strand, within Echvi_1661at 1932.059 kb on + strand, within Echvi_1661at 1932.059 kb on + strand, within Echvi_1661at 1932.071 kb on + strand, within Echvi_1661at 1932.072 kb on - strand, within Echvi_1661at 1932.072 kb on - strand, within Echvi_1661at 1932.073 kb on + strand, within Echvi_1661at 1932.073 kb on + strand, within Echvi_1661at 1932.074 kb on - strand, within Echvi_1661at 1932.161 kb on + strandat 1932.162 kb on - strandat 1932.294 kb on + strandat 1932.294 kb on + strandat 1932.305 kb on + strandat 1932.305 kb on + strandat 1932.306 kb on - strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.307 kb on + strandat 1932.308 kb on - strandat 1932.308 kb on - strandat 1932.308 kb on - strandat 1932.308 kb on - strandat 1932.308 kb on - strandat 1932.308 kb on - strandat 1932.308 kb on - strandat 1932.308 kb on - strandat 1932.386 kb on + strandat 1932.387 kb on - strandat 1932.390 kb on + strandat 1932.390 kb on + strandat 1932.393 kb on + strandat 1932.397 kb on + strandat 1932.411 kb on - strandat 1932.440 kb on - strandat 1932.440 kb on - strandat 1932.494 kb on + strand, within Echvi_1662at 1932.560 kb on + strand, within Echvi_1662at 1932.561 kb on - strand, within Echvi_1662at 1932.581 kb on - strand, within Echvi_1662at 1932.585 kb on + strand, within Echvi_1662at 1932.595 kb on + strand, within Echvi_1662at 1932.641 kb on - strandat 1932.658 kb on + strandat 1932.739 kb on - strandat 1932.739 kb on - strandat 1932.872 kb on + strand, within Echvi_1663at 1932.872 kb on + strand, within Echvi_1663at 1932.876 kb on + strand, within Echvi_1663at 1932.876 kb on + strand, within Echvi_1663at 1932.935 kb on - strand, within Echvi_1663at 1932.949 kb on + strand, within Echvi_1663at 1932.950 kb on - strand, within Echvi_1663at 1932.955 kb on + strand, within Echvi_1663at 1932.959 kb on + strand, within Echvi_1663at 1932.960 kb on - strand, within Echvi_1663at 1932.960 kb on - strand, within Echvi_1663at 1932.960 kb on - strand, within Echvi_1663at 1933.074 kb on + strand, within Echvi_1663at 1933.075 kb on - strand, within Echvi_1663at 1933.129 kb on + strand, within Echvi_1663at 1933.129 kb on + strand, within Echvi_1663at 1933.129 kb on + strand, within Echvi_1663at 1933.129 kb on + strand, within Echvi_1663at 1933.154 kb on + strand, within Echvi_1663at 1933.154 kb on + strand, within Echvi_1663at 1933.155 kb on - strand, within Echvi_1663at 1933.267 kb on + strand, within Echvi_1663at 1933.304 kb on - strand, within Echvi_1663at 1933.339 kb on + strand, within Echvi_1663at 1933.339 kb on + strand, within Echvi_1663at 1933.340 kb on - strand, within Echvi_1663at 1933.346 kb on + strand, within Echvi_1663at 1933.346 kb on + strand, within Echvi_1663at 1933.366 kb on - strand, within Echvi_1663at 1933.366 kb on - strand, within Echvi_1663at 1933.435 kb on - strand, within Echvi_1663at 1933.455 kb on + strand, within Echvi_1663at 1933.455 kb on + strand, within Echvi_1663at 1933.455 kb on + strand, within Echvi_1663at 1933.475 kb on + strand, within Echvi_1663at 1933.547 kb on + strand, within Echvi_1663at 1933.547 kb on + strand, within Echvi_1663

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,931,521 + Echvi_1661 0.68 +0.2
1,931,522 - Echvi_1661 0.68 +0.1
1,931,553 + Echvi_1661 0.69 +0.0
1,931,553 + Echvi_1661 0.69 +0.3
1,931,615 + Echvi_1661 0.72 +0.1
1,931,615 + Echvi_1661 0.72 +0.6
1,931,619 - Echvi_1661 0.72 +0.0
1,931,713 - Echvi_1661 0.75 +0.0
1,931,757 + Echvi_1661 0.77 -0.7
1,931,757 + Echvi_1661 0.77 +0.9
1,931,757 + Echvi_1661 0.77 -1.9
1,931,758 - Echvi_1661 0.77 -2.1
1,931,758 - Echvi_1661 0.77 -1.7
1,931,759 + Echvi_1661 0.77 -0.3
1,931,760 - Echvi_1661 0.77 -0.7
1,931,780 + Echvi_1661 0.78 -0.2
1,931,780 + Echvi_1661 0.78 +0.5
1,931,782 + Echvi_1661 0.78 +0.0
1,931,782 + Echvi_1661 0.78 -1.5
1,931,783 - Echvi_1661 0.78 +0.4
1,931,783 - Echvi_1661 0.78 +3.0
1,932,029 - Echvi_1661 0.87 +0.8
1,932,059 + Echvi_1661 0.88 -0.7
1,932,059 + Echvi_1661 0.88 +0.5
1,932,071 + Echvi_1661 0.88 +3.8
1,932,072 - Echvi_1661 0.88 -0.1
1,932,072 - Echvi_1661 0.88 -1.0
1,932,073 + Echvi_1661 0.88 +3.0
1,932,073 + Echvi_1661 0.88 -0.2
1,932,074 - Echvi_1661 0.88 +1.9
1,932,161 + -1.3
1,932,162 - -1.2
1,932,294 + +0.1
1,932,294 + -1.7
1,932,305 + -0.3
1,932,305 + -0.8
1,932,306 - +0.2
1,932,307 + -1.0
1,932,307 + -0.6
1,932,307 + +0.6
1,932,307 + -0.4
1,932,307 + -0.4
1,932,307 + +1.8
1,932,307 + +0.1
1,932,307 + -2.2
1,932,307 + -0.7
1,932,307 + +0.5
1,932,308 - -0.5
1,932,308 - +0.4
1,932,308 - -0.1
1,932,308 - +0.0
1,932,308 - +0.3
1,932,308 - +0.4
1,932,308 - +0.2
1,932,308 - -0.9
1,932,386 + +0.4
1,932,387 - +2.0
1,932,390 + -0.1
1,932,390 + +1.2
1,932,393 + +0.7
1,932,397 + +1.0
1,932,411 - -0.3
1,932,440 - -0.6
1,932,440 - -0.8
1,932,494 + Echvi_1662 0.34 -0.1
1,932,560 + Echvi_1662 0.69 -1.2
1,932,561 - Echvi_1662 0.69 +0.9
1,932,581 - Echvi_1662 0.80 +0.2
1,932,585 + Echvi_1662 0.82 +1.2
1,932,595 + Echvi_1662 0.87 +1.7
1,932,641 - -0.7
1,932,658 + +1.0
1,932,739 - +0.8
1,932,739 - -0.1
1,932,872 + Echvi_1663 0.20 +0.4
1,932,872 + Echvi_1663 0.20 -0.2
1,932,876 + Echvi_1663 0.20 +0.7
1,932,876 + Echvi_1663 0.20 +0.0
1,932,935 - Echvi_1663 0.25 +0.4
1,932,949 + Echvi_1663 0.26 -0.0
1,932,950 - Echvi_1663 0.26 -1.5
1,932,955 + Echvi_1663 0.26 -0.2
1,932,959 + Echvi_1663 0.26 -1.4
1,932,960 - Echvi_1663 0.26 -0.6
1,932,960 - Echvi_1663 0.26 -2.5
1,932,960 - Echvi_1663 0.26 +0.2
1,933,074 + Echvi_1663 0.35 -2.0
1,933,075 - Echvi_1663 0.35 -1.0
1,933,129 + Echvi_1663 0.39 +0.6
1,933,129 + Echvi_1663 0.39 -0.2
1,933,129 + Echvi_1663 0.39 -2.3
1,933,129 + Echvi_1663 0.39 -0.4
1,933,154 + Echvi_1663 0.41 -1.0
1,933,154 + Echvi_1663 0.41 -0.5
1,933,155 - Echvi_1663 0.41 +0.2
1,933,267 + Echvi_1663 0.50 -0.3
1,933,304 - Echvi_1663 0.53 -0.6
1,933,339 + Echvi_1663 0.55 -1.6
1,933,339 + Echvi_1663 0.55 -0.3
1,933,340 - Echvi_1663 0.55 +0.1
1,933,346 + Echvi_1663 0.56 -1.0
1,933,346 + Echvi_1663 0.56 +0.8
1,933,366 - Echvi_1663 0.57 +2.0
1,933,366 - Echvi_1663 0.57 -0.2
1,933,435 - Echvi_1663 0.63 +1.3
1,933,455 + Echvi_1663 0.64 +0.0
1,933,455 + Echvi_1663 0.64 -0.5
1,933,455 + Echvi_1663 0.64 -2.2
1,933,475 + Echvi_1663 0.66 +0.1
1,933,547 + Echvi_1663 0.71 +0.9
1,933,547 + Echvi_1663 0.71 -0.6

Or see this region's nucleotide sequence