Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1481

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1479 and Echvi_1480 are separated by 3 nucleotidesEchvi_1480 and Echvi_1481 are separated by 33 nucleotidesEchvi_1481 and Echvi_1482 are separated by 85 nucleotides Echvi_1479: Echvi_1479 - lycopene cyclase domain, at 1,694,558 to 1,695,268 _1479 Echvi_1480: Echvi_1480 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 1,695,272 to 1,696,117 _1480 Echvi_1481: Echvi_1481 - Fatty acid desaturase, at 1,696,151 to 1,696,843 _1481 Echvi_1482: Echvi_1482 - Outer membrane protein/protective antigen OMA87, at 1,696,929 to 1,698,098 _1482 Position (kb) 1696 1697Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1695.216 kb on + strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.217 kb on - strandat 1695.246 kb on + strandat 1695.267 kb on - strandat 1695.272 kb on - strandat 1695.272 kb on - strandat 1695.325 kb on - strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.327 kb on + strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.328 kb on - strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.329 kb on + strandat 1695.330 kb on - strandat 1695.330 kb on - strandat 1695.330 kb on - strandat 1695.353 kb on - strandat 1695.463 kb on + strand, within Echvi_1480at 1695.464 kb on - strand, within Echvi_1480at 1695.486 kb on + strand, within Echvi_1480at 1695.486 kb on + strand, within Echvi_1480at 1695.487 kb on - strand, within Echvi_1480at 1695.547 kb on + strand, within Echvi_1480at 1695.630 kb on - strand, within Echvi_1480at 1695.636 kb on - strand, within Echvi_1480at 1695.660 kb on + strand, within Echvi_1480at 1695.661 kb on - strand, within Echvi_1480at 1695.711 kb on + strand, within Echvi_1480at 1695.748 kb on + strand, within Echvi_1480at 1695.749 kb on - strand, within Echvi_1480at 1695.782 kb on - strand, within Echvi_1480at 1695.789 kb on - strand, within Echvi_1480at 1695.789 kb on - strand, within Echvi_1480at 1695.822 kb on + strand, within Echvi_1480at 1695.823 kb on - strand, within Echvi_1480at 1695.897 kb on + strand, within Echvi_1480at 1695.898 kb on - strand, within Echvi_1480at 1695.899 kb on + strand, within Echvi_1480at 1695.900 kb on - strand, within Echvi_1480at 1695.900 kb on - strand, within Echvi_1480at 1695.909 kb on + strand, within Echvi_1480at 1695.925 kb on + strand, within Echvi_1480at 1696.040 kb on - strandat 1696.040 kb on - strandat 1696.092 kb on + strandat 1696.128 kb on - strandat 1696.172 kb on + strandat 1696.172 kb on + strandat 1696.173 kb on - strandat 1696.302 kb on + strand, within Echvi_1481at 1696.302 kb on + strand, within Echvi_1481at 1696.316 kb on + strand, within Echvi_1481at 1696.317 kb on - strand, within Echvi_1481at 1696.423 kb on + strand, within Echvi_1481at 1696.430 kb on + strand, within Echvi_1481at 1696.526 kb on + strand, within Echvi_1481at 1696.526 kb on + strand, within Echvi_1481at 1696.537 kb on + strand, within Echvi_1481at 1696.547 kb on + strand, within Echvi_1481at 1696.548 kb on - strand, within Echvi_1481at 1696.582 kb on + strand, within Echvi_1481at 1696.582 kb on + strand, within Echvi_1481at 1696.582 kb on + strand, within Echvi_1481at 1696.586 kb on + strand, within Echvi_1481at 1696.586 kb on + strand, within Echvi_1481at 1696.587 kb on - strand, within Echvi_1481at 1696.609 kb on - strand, within Echvi_1481at 1696.685 kb on + strand, within Echvi_1481at 1696.686 kb on - strand, within Echvi_1481at 1696.712 kb on - strand, within Echvi_1481at 1696.715 kb on - strand, within Echvi_1481at 1696.715 kb on - strand, within Echvi_1481at 1696.720 kb on + strand, within Echvi_1481at 1696.720 kb on + strand, within Echvi_1481at 1696.720 kb on + strand, within Echvi_1481at 1696.720 kb on + strand, within Echvi_1481at 1696.721 kb on - strand, within Echvi_1481at 1696.721 kb on - strand, within Echvi_1481at 1696.873 kb on - strandat 1696.936 kb on + strandat 1697.120 kb on + strand, within Echvi_1482at 1697.136 kb on + strand, within Echvi_1482at 1697.136 kb on + strand, within Echvi_1482at 1697.137 kb on - strand, within Echvi_1482at 1697.137 kb on - strand, within Echvi_1482at 1697.243 kb on + strand, within Echvi_1482at 1697.244 kb on - strand, within Echvi_1482at 1697.244 kb on - strand, within Echvi_1482at 1697.244 kb on - strand, within Echvi_1482at 1697.249 kb on + strand, within Echvi_1482at 1697.250 kb on - strand, within Echvi_1482at 1697.329 kb on + strand, within Echvi_1482at 1697.365 kb on + strand, within Echvi_1482at 1697.366 kb on - strand, within Echvi_1482at 1697.376 kb on - strand, within Echvi_1482at 1697.376 kb on - strand, within Echvi_1482at 1697.400 kb on + strand, within Echvi_1482at 1697.400 kb on + strand, within Echvi_1482at 1697.401 kb on - strand, within Echvi_1482at 1697.401 kb on - strand, within Echvi_1482at 1697.433 kb on + strand, within Echvi_1482at 1697.433 kb on + strand, within Echvi_1482at 1697.433 kb on + strand, within Echvi_1482at 1697.433 kb on + strand, within Echvi_1482at 1697.434 kb on - strand, within Echvi_1482at 1697.434 kb on - strand, within Echvi_1482at 1697.458 kb on + strand, within Echvi_1482at 1697.458 kb on + strand, within Echvi_1482at 1697.459 kb on - strand, within Echvi_1482at 1697.499 kb on + strand, within Echvi_1482at 1697.501 kb on + strand, within Echvi_1482at 1697.502 kb on - strand, within Echvi_1482at 1697.589 kb on + strand, within Echvi_1482at 1697.590 kb on - strand, within Echvi_1482at 1697.590 kb on - strand, within Echvi_1482at 1697.590 kb on - strand, within Echvi_1482at 1697.608 kb on + strand, within Echvi_1482at 1697.609 kb on - strand, within Echvi_1482at 1697.679 kb on + strand, within Echvi_1482at 1697.679 kb on + strand, within Echvi_1482at 1697.679 kb on + strand, within Echvi_1482at 1697.680 kb on - strand, within Echvi_1482at 1697.716 kb on - strand, within Echvi_1482at 1697.716 kb on - strand, within Echvi_1482at 1697.716 kb on - strand, within Echvi_1482at 1697.736 kb on - strand, within Echvi_1482

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,695,216 + +1.0
1,695,217 - -2.0
1,695,217 - -0.8
1,695,217 - -1.9
1,695,217 - -0.7
1,695,217 - -0.1
1,695,217 - -0.7
1,695,217 - -0.9
1,695,246 + +0.2
1,695,267 - +0.4
1,695,272 - +0.8
1,695,272 - +1.4
1,695,325 - +0.8
1,695,327 + +1.7
1,695,327 + +0.7
1,695,327 + +0.2
1,695,327 + +1.0
1,695,327 + +0.2
1,695,327 + -0.5
1,695,328 - +0.8
1,695,328 - -0.5
1,695,328 - +2.2
1,695,328 - +0.1
1,695,328 - -0.8
1,695,329 + -0.9
1,695,329 + +0.9
1,695,329 + +0.6
1,695,329 + -1.4
1,695,329 + -0.1
1,695,329 + +1.3
1,695,329 + +0.0
1,695,330 - +0.2
1,695,330 - -0.2
1,695,330 - +0.3
1,695,353 - -0.1
1,695,463 + Echvi_1480 0.23 +0.8
1,695,464 - Echvi_1480 0.23 -0.6
1,695,486 + Echvi_1480 0.25 -1.4
1,695,486 + Echvi_1480 0.25 -1.8
1,695,487 - Echvi_1480 0.25 -0.1
1,695,547 + Echvi_1480 0.33 +1.6
1,695,630 - Echvi_1480 0.42 +0.5
1,695,636 - Echvi_1480 0.43 -1.5
1,695,660 + Echvi_1480 0.46 -0.7
1,695,661 - Echvi_1480 0.46 +0.6
1,695,711 + Echvi_1480 0.52 -1.5
1,695,748 + Echvi_1480 0.56 -1.1
1,695,749 - Echvi_1480 0.56 +0.1
1,695,782 - Echvi_1480 0.60 -0.4
1,695,789 - Echvi_1480 0.61 -1.1
1,695,789 - Echvi_1480 0.61 -0.9
1,695,822 + Echvi_1480 0.65 +0.3
1,695,823 - Echvi_1480 0.65 -0.0
1,695,897 + Echvi_1480 0.74 +1.5
1,695,898 - Echvi_1480 0.74 -0.3
1,695,899 + Echvi_1480 0.74 -0.5
1,695,900 - Echvi_1480 0.74 +0.2
1,695,900 - Echvi_1480 0.74 -0.2
1,695,909 + Echvi_1480 0.75 -0.5
1,695,925 + Echvi_1480 0.77 -0.3
1,696,040 - -0.5
1,696,040 - +0.4
1,696,092 + -0.9
1,696,128 - +0.7
1,696,172 + +0.1
1,696,172 + +0.1
1,696,173 - -0.2
1,696,302 + Echvi_1481 0.22 +1.3
1,696,302 + Echvi_1481 0.22 +0.4
1,696,316 + Echvi_1481 0.24 -0.4
1,696,317 - Echvi_1481 0.24 -1.5
1,696,423 + Echvi_1481 0.39 -0.1
1,696,430 + Echvi_1481 0.40 -1.4
1,696,526 + Echvi_1481 0.54 +0.2
1,696,526 + Echvi_1481 0.54 +1.0
1,696,537 + Echvi_1481 0.56 +0.3
1,696,547 + Echvi_1481 0.57 -0.3
1,696,548 - Echvi_1481 0.57 -0.5
1,696,582 + Echvi_1481 0.62 +0.4
1,696,582 + Echvi_1481 0.62 -0.4
1,696,582 + Echvi_1481 0.62 +1.2
1,696,586 + Echvi_1481 0.63 +0.2
1,696,586 + Echvi_1481 0.63 -2.1
1,696,587 - Echvi_1481 0.63 -1.3
1,696,609 - Echvi_1481 0.66 -1.5
1,696,685 + Echvi_1481 0.77 -2.5
1,696,686 - Echvi_1481 0.77 +1.7
1,696,712 - Echvi_1481 0.81 +0.2
1,696,715 - Echvi_1481 0.81 +2.4
1,696,715 - Echvi_1481 0.81 +1.8
1,696,720 + Echvi_1481 0.82 +0.8
1,696,720 + Echvi_1481 0.82 +1.5
1,696,720 + Echvi_1481 0.82 +1.1
1,696,720 + Echvi_1481 0.82 -1.7
1,696,721 - Echvi_1481 0.82 -1.1
1,696,721 - Echvi_1481 0.82 +0.9
1,696,873 - +0.5
1,696,936 + -0.3
1,697,120 + Echvi_1482 0.16 +0.8
1,697,136 + Echvi_1482 0.18 +0.1
1,697,136 + Echvi_1482 0.18 -0.3
1,697,137 - Echvi_1482 0.18 +1.3
1,697,137 - Echvi_1482 0.18 -1.6
1,697,243 + Echvi_1482 0.27 -0.1
1,697,244 - Echvi_1482 0.27 +2.2
1,697,244 - Echvi_1482 0.27 +0.6
1,697,244 - Echvi_1482 0.27 -0.3
1,697,249 + Echvi_1482 0.27 -1.9
1,697,250 - Echvi_1482 0.27 +0.6
1,697,329 + Echvi_1482 0.34 +0.1
1,697,365 + Echvi_1482 0.37 +1.2
1,697,366 - Echvi_1482 0.37 -2.0
1,697,376 - Echvi_1482 0.38 -0.3
1,697,376 - Echvi_1482 0.38 +0.7
1,697,400 + Echvi_1482 0.40 +0.1
1,697,400 + Echvi_1482 0.40 -0.5
1,697,401 - Echvi_1482 0.40 -0.1
1,697,401 - Echvi_1482 0.40 -0.3
1,697,433 + Echvi_1482 0.43 +2.9
1,697,433 + Echvi_1482 0.43 -0.1
1,697,433 + Echvi_1482 0.43 +0.6
1,697,433 + Echvi_1482 0.43 +0.7
1,697,434 - Echvi_1482 0.43 +0.1
1,697,434 - Echvi_1482 0.43 -0.9
1,697,458 + Echvi_1482 0.45 -0.2
1,697,458 + Echvi_1482 0.45 -0.4
1,697,459 - Echvi_1482 0.45 -0.0
1,697,499 + Echvi_1482 0.49 +0.1
1,697,501 + Echvi_1482 0.49 -1.3
1,697,502 - Echvi_1482 0.49 +0.1
1,697,589 + Echvi_1482 0.56 -0.0
1,697,590 - Echvi_1482 0.56 -0.3
1,697,590 - Echvi_1482 0.56 +0.5
1,697,590 - Echvi_1482 0.56 -0.1
1,697,608 + Echvi_1482 0.58 +0.2
1,697,609 - Echvi_1482 0.58 +0.7
1,697,679 + Echvi_1482 0.64 -1.4
1,697,679 + Echvi_1482 0.64 -1.7
1,697,679 + Echvi_1482 0.64 +0.5
1,697,680 - Echvi_1482 0.64 -0.4
1,697,716 - Echvi_1482 0.67 +1.4
1,697,716 - Echvi_1482 0.67 +0.7
1,697,716 - Echvi_1482 0.67 +1.1
1,697,736 - Echvi_1482 0.69 +0.3

Or see this region's nucleotide sequence