Strain Fitness in Agrobacterium fabrum C58 around Atu5476

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5474 and Atu5475 are separated by 31 nucleotidesAtu5475 and Atu5476 are separated by 39 nucleotidesAtu5476 and Atu5477 are separated by 26 nucleotides Atu5474: Atu5474 - 2-hydroxyacid dehydrogenase, at 466,208 to 467,143 Atu5474 Atu5475: Atu5475 - hypothetical protein, at 467,175 to 467,588 Atu5475 Atu5476: Atu5476 - CTP synthase, at 467,628 to 468,851 Atu5476 Atu5477: Atu5477 - peptidase, at 468,878 to 470,047 Atu5477 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 466.690 kb on - strand, within Atu5474at 466.707 kb on + strand, within Atu5474at 466.719 kb on - strand, within Atu5474at 466.752 kb on + strand, within Atu5474at 466.807 kb on - strand, within Atu5474at 466.832 kb on + strand, within Atu5474at 466.835 kb on - strand, within Atu5474at 466.853 kb on + strand, within Atu5474at 466.909 kb on + strand, within Atu5474at 466.922 kb on - strand, within Atu5474at 466.987 kb on + strand, within Atu5474at 467.094 kb on + strandat 467.173 kb on - strandat 467.202 kb on + strandat 467.301 kb on + strand, within Atu5475at 467.386 kb on + strand, within Atu5475at 467.501 kb on + strand, within Atu5475at 467.519 kb on - strand, within Atu5475at 467.547 kb on - strandat 467.593 kb on - strandat 467.629 kb on + strandat 467.635 kb on + strandat 467.643 kb on - strandat 467.779 kb on - strand, within Atu5476at 467.786 kb on - strand, within Atu5476at 467.801 kb on + strand, within Atu5476at 467.809 kb on - strand, within Atu5476at 467.829 kb on + strand, within Atu5476at 467.832 kb on - strand, within Atu5476at 467.870 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.890 kb on + strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.916 kb on + strand, within Atu5476at 467.943 kb on - strand, within Atu5476at 468.137 kb on - strand, within Atu5476at 468.231 kb on - strand, within Atu5476at 468.248 kb on - strand, within Atu5476at 468.306 kb on + strand, within Atu5476at 468.371 kb on - strand, within Atu5476at 468.404 kb on - strand, within Atu5476at 468.429 kb on + strand, within Atu5476at 468.437 kb on - strand, within Atu5476at 468.462 kb on + strand, within Atu5476at 468.476 kb on + strand, within Atu5476at 468.553 kb on + strand, within Atu5476at 468.570 kb on + strand, within Atu5476at 468.570 kb on + strand, within Atu5476at 468.586 kb on - strand, within Atu5476at 468.609 kb on - strand, within Atu5476at 468.621 kb on - strand, within Atu5476at 468.623 kb on + strand, within Atu5476at 468.700 kb on + strand, within Atu5476at 468.718 kb on - strand, within Atu5476at 468.741 kb on - strandat 468.823 kb on + strandat 468.831 kb on - strandat 468.927 kb on + strandat 468.935 kb on - strandat 468.955 kb on + strandat 468.997 kb on + strand, within Atu5477at 469.005 kb on - strand, within Atu5477at 469.120 kb on + strand, within Atu5477at 469.147 kb on + strand, within Atu5477at 469.171 kb on - strand, within Atu5477at 469.171 kb on - strand, within Atu5477at 469.219 kb on + strand, within Atu5477at 469.230 kb on - strand, within Atu5477at 469.251 kb on + strand, within Atu5477at 469.268 kb on + strand, within Atu5477at 469.268 kb on + strand, within Atu5477at 469.276 kb on - strand, within Atu5477at 469.291 kb on - strand, within Atu5477at 469.335 kb on + strand, within Atu5477at 469.359 kb on - strand, within Atu5477at 469.388 kb on - strand, within Atu5477at 469.419 kb on - strand, within Atu5477at 469.421 kb on + strand, within Atu5477at 469.426 kb on + strand, within Atu5477at 469.451 kb on + strand, within Atu5477at 469.451 kb on + strand, within Atu5477at 469.521 kb on + strand, within Atu5477at 469.531 kb on - strand, within Atu5477at 469.581 kb on + strand, within Atu5477at 469.581 kb on + strand, within Atu5477at 469.631 kb on + strand, within Atu5477at 469.631 kb on + strand, within Atu5477at 469.639 kb on + strand, within Atu5477at 469.639 kb on - strand, within Atu5477at 469.639 kb on - strand, within Atu5477at 469.676 kb on - strand, within Atu5477at 469.687 kb on - strand, within Atu5477at 469.748 kb on - strand, within Atu5477at 469.752 kb on - strand, within Atu5477

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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466,690 - Atu5474 0.51 -0.2
466,707 + Atu5474 0.53 -0.7
466,719 - Atu5474 0.55 +0.5
466,752 + Atu5474 0.58 -0.8
466,807 - Atu5474 0.64 +0.2
466,832 + Atu5474 0.67 +0.8
466,835 - Atu5474 0.67 +0.5
466,853 + Atu5474 0.69 +0.2
466,909 + Atu5474 0.75 +1.0
466,922 - Atu5474 0.76 +0.4
466,987 + Atu5474 0.83 +0.3
467,094 + +0.3
467,173 - +1.3
467,202 + +0.3
467,301 + Atu5475 0.30 -0.6
467,386 + Atu5475 0.51 +0.3
467,501 + Atu5475 0.79 +0.6
467,519 - Atu5475 0.83 +1.2
467,547 - +1.6
467,593 - -0.7
467,629 + +1.0
467,635 + +0.9
467,643 - +0.5
467,779 - Atu5476 0.12 +1.4
467,786 - Atu5476 0.13 -0.2
467,801 + Atu5476 0.14 +1.6
467,809 - Atu5476 0.15 +0.7
467,829 + Atu5476 0.16 +1.5
467,832 - Atu5476 0.17 +0.2
467,870 + Atu5476 0.20 +0.1
467,885 + Atu5476 0.21 +0.2
467,885 + Atu5476 0.21 +1.7
467,885 + Atu5476 0.21 +1.6
467,890 + Atu5476 0.21 +1.2
467,893 - Atu5476 0.22 +0.1
467,893 - Atu5476 0.22 +2.6
467,893 - Atu5476 0.22 +1.6
467,916 + Atu5476 0.24 +0.3
467,943 - Atu5476 0.26 +1.6
468,137 - Atu5476 0.42 +0.8
468,231 - Atu5476 0.49 +0.9
468,248 - Atu5476 0.51 +0.8
468,306 + Atu5476 0.55 +2.3
468,371 - Atu5476 0.61 +0.3
468,404 - Atu5476 0.63 -0.0
468,429 + Atu5476 0.65 -1.8
468,437 - Atu5476 0.66 +0.9
468,462 + Atu5476 0.68 +0.2
468,476 + Atu5476 0.69 +0.1
468,553 + Atu5476 0.76 -0.1
468,570 + Atu5476 0.77 +0.1
468,570 + Atu5476 0.77 -0.2
468,586 - Atu5476 0.78 +0.2
468,609 - Atu5476 0.80 +0.2
468,621 - Atu5476 0.81 +1.1
468,623 + Atu5476 0.81 -0.2
468,700 + Atu5476 0.88 +0.1
468,718 - Atu5476 0.89 +1.3
468,741 - +0.3
468,823 + +0.5
468,831 - +0.6
468,927 + -1.6
468,935 - +0.6
468,955 + -0.3
468,997 + Atu5477 0.10 +0.5
469,005 - Atu5477 0.11 +1.6
469,120 + Atu5477 0.21 +0.5
469,147 + Atu5477 0.23 +0.0
469,171 - Atu5477 0.25 +0.8
469,171 - Atu5477 0.25 +0.2
469,219 + Atu5477 0.29 +1.4
469,230 - Atu5477 0.30 -0.7
469,251 + Atu5477 0.32 +0.7
469,268 + Atu5477 0.33 +0.2
469,268 + Atu5477 0.33 +1.4
469,276 - Atu5477 0.34 +0.4
469,291 - Atu5477 0.35 +0.1
469,335 + Atu5477 0.39 -0.3
469,359 - Atu5477 0.41 +0.1
469,388 - Atu5477 0.44 -0.8
469,419 - Atu5477 0.46 +0.8
469,421 + Atu5477 0.46 +0.0
469,426 + Atu5477 0.47 +1.1
469,451 + Atu5477 0.49 +0.3
469,451 + Atu5477 0.49 +2.6
469,521 + Atu5477 0.55 +0.3
469,531 - Atu5477 0.56 +0.7
469,581 + Atu5477 0.60 +0.6
469,581 + Atu5477 0.60 -0.7
469,631 + Atu5477 0.64 +0.7
469,631 + Atu5477 0.64 +0.7
469,639 + Atu5477 0.65 +2.0
469,639 - Atu5477 0.65 -0.1
469,639 - Atu5477 0.65 +0.3
469,676 - Atu5477 0.68 -0.7
469,687 - Atu5477 0.69 -0.1
469,748 - Atu5477 0.74 +0.6
469,752 - Atu5477 0.75 -0.5

Or see this region's nucleotide sequence