Experiment: Lomefloxacin 0.0004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_601 and PfGW456L13_602 are separated by 367 nucleotides PfGW456L13_602 and PfGW456L13_603 overlap by 1 nucleotides PfGW456L13_603 and PfGW456L13_604 are separated by 60 nucleotides
PfGW456L13_601 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 694,562 to 695,278
_601
PfGW456L13_602 - Methionine ABC transporter ATP-binding protein, at 695,646 to 696,653
_602
PfGW456L13_603 - Methionine ABC transporter permease protein, at 696,653 to 697,327
_603
PfGW456L13_604 - Methionine ABC transporter substrate-binding protein, at 697,388 to 698,158
_604
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.680 kb on + strand, within PfGW456L13_601 at 694.680 kb on + strand, within PfGW456L13_601 at 694.680 kb on + strand, within PfGW456L13_601 at 694.680 kb on + strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.681 kb on - strand, within PfGW456L13_601 at 694.782 kb on - strand, within PfGW456L13_601 at 694.782 kb on - strand, within PfGW456L13_601 at 694.805 kb on + strand, within PfGW456L13_601 at 694.805 kb on + strand, within PfGW456L13_601 at 694.806 kb on - strand, within PfGW456L13_601 at 694.806 kb on - strand, within PfGW456L13_601 at 695.048 kb on - strand, within PfGW456L13_601 at 695.057 kb on - strand, within PfGW456L13_601 at 695.143 kb on + strand, within PfGW456L13_601 at 695.143 kb on + strand, within PfGW456L13_601 at 695.144 kb on - strand, within PfGW456L13_601 at 695.150 kb on + strand, within PfGW456L13_601 at 695.259 kb on + strand at 695.259 kb on + strand at 695.259 kb on + strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.260 kb on - strand at 695.269 kb on + strand at 695.270 kb on - strand at 695.270 kb on - strand at 695.291 kb on + strand at 695.291 kb on + strand at 695.291 kb on + strand at 695.291 kb on + strand at 695.292 kb on - strand at 695.292 kb on - strand at 695.292 kb on - strand at 695.348 kb on + strand at 695.348 kb on + strand at 695.348 kb on + strand at 695.349 kb on - strand at 695.349 kb on - strand at 695.349 kb on - strand at 695.349 kb on - strand at 695.353 kb on + strand at 695.353 kb on + strand at 695.353 kb on + strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.354 kb on - strand at 695.528 kb on - strand at 695.550 kb on - strand at 695.556 kb on + strand at 695.563 kb on + strand at 695.563 kb on + strand at 695.564 kb on - strand at 695.573 kb on + strand at 695.573 kb on + strand at 695.574 kb on - strand at 695.574 kb on - strand at 695.575 kb on + strand at 695.586 kb on + strand at 695.586 kb on + strand at 695.587 kb on - strand at 695.622 kb on - strand at 695.643 kb on + strand at 695.644 kb on - strand at 695.644 kb on - strand at 695.670 kb on - strand at 695.670 kb on - strand at 695.670 kb on - strand at 695.677 kb on - strand at 695.677 kb on - strand at 695.677 kb on - strand at 695.745 kb on + strand at 695.746 kb on - strand at 696.469 kb on - strand, within PfGW456L13_602 at 696.469 kb on - strand, within PfGW456L13_602 at 696.513 kb on + strand, within PfGW456L13_602 at 696.513 kb on + strand, within PfGW456L13_602 at 696.513 kb on + strand, within PfGW456L13_602 at 696.514 kb on - strand, within PfGW456L13_602 at 696.514 kb on - strand, within PfGW456L13_602 at 696.830 kb on + strand, within PfGW456L13_603 at 696.830 kb on + strand, within PfGW456L13_603 at 696.830 kb on + strand, within PfGW456L13_603 at 696.830 kb on + strand, within PfGW456L13_603 at 696.831 kb on - strand, within PfGW456L13_603 at 696.831 kb on - strand, within PfGW456L13_603 at 696.831 kb on - strand, within PfGW456L13_603 at 696.964 kb on - strand, within PfGW456L13_603 at 697.060 kb on + strand, within PfGW456L13_603 at 697.060 kb on + strand, within PfGW456L13_603 at 697.061 kb on - strand, within PfGW456L13_603 at 697.061 kb on - strand, within PfGW456L13_603 at 697.061 kb on - strand, within PfGW456L13_603 at 697.061 kb on - strand, within PfGW456L13_603 at 697.138 kb on + strand, within PfGW456L13_603 at 697.138 kb on + strand, within PfGW456L13_603 at 697.138 kb on + strand, within PfGW456L13_603 at 697.138 kb on + strand, within PfGW456L13_603 at 697.138 kb on + strand, within PfGW456L13_603 at 697.139 kb on - strand, within PfGW456L13_603 at 697.139 kb on - strand, within PfGW456L13_603 at 697.139 kb on - strand, within PfGW456L13_603 at 697.139 kb on - strand, within PfGW456L13_603 at 697.151 kb on + strand, within PfGW456L13_603 at 697.152 kb on - strand, within PfGW456L13_603 at 697.266 kb on + strand at 697.267 kb on - strand at 697.278 kb on + strand at 697.279 kb on - strand at 697.325 kb on + strand at 697.325 kb on + strand at 697.325 kb on + strand at 697.325 kb on + strand at 697.326 kb on - strand at 697.326 kb on - strand at 697.326 kb on - strand at 697.382 kb on - strand at 697.382 kb on - strand at 697.382 kb on - strand at 697.382 kb on - strand at 697.382 kb on - strand at 697.382 kb on - strand at 697.382 kb on - strand at 697.382 kb on - strand at 697.399 kb on - strand at 697.542 kb on + strand, within PfGW456L13_604 at 697.542 kb on + strand, within PfGW456L13_604 at 697.542 kb on + strand, within PfGW456L13_604 at 697.543 kb on - strand, within PfGW456L13_604 at 697.543 kb on - strand, within PfGW456L13_604 at 697.543 kb on - strand, within PfGW456L13_604 at 697.546 kb on + strand, within PfGW456L13_604 at 697.546 kb on + strand, within PfGW456L13_604 at 697.547 kb on - strand, within PfGW456L13_604 at 697.553 kb on + strand, within PfGW456L13_604 at 697.553 kb on + strand, within PfGW456L13_604 at 697.553 kb on + strand, within PfGW456L13_604 at 697.553 kb on + strand, within PfGW456L13_604 at 697.553 kb on + strand, within PfGW456L13_604 at 697.553 kb on + strand, within PfGW456L13_604 at 697.553 kb on + strand, within PfGW456L13_604 at 697.554 kb on - strand, within PfGW456L13_604 at 697.554 kb on - strand, within PfGW456L13_604 at 697.554 kb on - strand, within PfGW456L13_604 at 697.554 kb on - strand, within PfGW456L13_604 at 697.554 kb on - strand, within PfGW456L13_604 at 697.619 kb on + strand, within PfGW456L13_604 at 697.620 kb on - strand, within PfGW456L13_604
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0004 mM remove 694,680 + PfGW456L13_601 0.16 -1.8 694,680 + PfGW456L13_601 0.16 -3.1 694,680 + PfGW456L13_601 0.16 +0.9 694,680 + PfGW456L13_601 0.16 +0.8 694,681 - PfGW456L13_601 0.17 -0.2 694,681 - PfGW456L13_601 0.17 +0.1 694,681 - PfGW456L13_601 0.17 -1.0 694,681 - PfGW456L13_601 0.17 -1.7 694,681 - PfGW456L13_601 0.17 +0.8 694,681 - PfGW456L13_601 0.17 -0.7 694,681 - PfGW456L13_601 0.17 -2.4 694,681 - PfGW456L13_601 0.17 -1.7 694,782 - PfGW456L13_601 0.31 -1.5 694,782 - PfGW456L13_601 0.31 -0.9 694,805 + PfGW456L13_601 0.34 -1.5 694,805 + PfGW456L13_601 0.34 -2.0 694,806 - PfGW456L13_601 0.34 -1.2 694,806 - PfGW456L13_601 0.34 -0.7 695,048 - PfGW456L13_601 0.68 -1.8 695,057 - PfGW456L13_601 0.69 -1.3 695,143 + PfGW456L13_601 0.81 -0.8 695,143 + PfGW456L13_601 0.81 -1.1 695,144 - PfGW456L13_601 0.81 -0.1 695,150 + PfGW456L13_601 0.82 -0.3 695,259 + -0.9 695,259 + -1.1 695,259 + +1.3 695,260 - -1.2 695,260 - -0.4 695,260 - -1.2 695,260 - -2.0 695,260 - -0.5 695,260 - -2.1 695,260 - -0.2 695,269 + +1.3 695,270 - -1.6 695,270 - -0.8 695,291 + -0.0 695,291 + -0.5 695,291 + -0.3 695,291 + +1.0 695,292 - -1.1 695,292 - -0.2 695,292 - +0.8 695,348 + +0.0 695,348 + +0.6 695,348 + +0.0 695,349 - -1.9 695,349 - +0.6 695,349 - +1.8 695,349 - -0.2 695,353 + -0.4 695,353 + -1.4 695,353 + +0.1 695,354 - -0.3 695,354 - +0.5 695,354 - -1.9 695,354 - +0.8 695,354 - +0.6 695,528 - -1.9 695,550 - -2.1 695,556 + -0.8 695,563 + -2.4 695,563 + -0.1 695,564 - -1.9 695,573 + -2.8 695,573 + -1.0 695,574 - -2.3 695,574 - -1.5 695,575 + +0.8 695,586 + -2.2 695,586 + -2.5 695,587 - -0.6 695,622 - +0.1 695,643 + -0.4 695,644 - -1.5 695,644 - -1.5 695,670 - -1.9 695,670 - -1.8 695,670 - -2.4 695,677 - -1.0 695,677 - -0.7 695,677 - +1.2 695,745 + -2.9 695,746 - -3.1 696,469 - PfGW456L13_602 0.82 -1.0 696,469 - PfGW456L13_602 0.82 -1.1 696,513 + PfGW456L13_602 0.86 -1.9 696,513 + PfGW456L13_602 0.86 -0.9 696,513 + PfGW456L13_602 0.86 -0.9 696,514 - PfGW456L13_602 0.86 -1.7 696,514 - PfGW456L13_602 0.86 -0.4 696,830 + PfGW456L13_603 0.26 -1.3 696,830 + PfGW456L13_603 0.26 -0.2 696,830 + PfGW456L13_603 0.26 -1.8 696,830 + PfGW456L13_603 0.26 -0.3 696,831 - PfGW456L13_603 0.26 +0.8 696,831 - PfGW456L13_603 0.26 -1.9 696,831 - PfGW456L13_603 0.26 -1.7 696,964 - PfGW456L13_603 0.46 +0.0 697,060 + PfGW456L13_603 0.60 -0.8 697,060 + PfGW456L13_603 0.60 +0.1 697,061 - PfGW456L13_603 0.60 -1.3 697,061 - PfGW456L13_603 0.60 -1.3 697,061 - PfGW456L13_603 0.60 -0.4 697,061 - PfGW456L13_603 0.60 -0.5 697,138 + PfGW456L13_603 0.72 -2.6 697,138 + PfGW456L13_603 0.72 -0.6 697,138 + PfGW456L13_603 0.72 +0.4 697,138 + PfGW456L13_603 0.72 +0.5 697,138 + PfGW456L13_603 0.72 -2.2 697,139 - PfGW456L13_603 0.72 +0.8 697,139 - PfGW456L13_603 0.72 +0.5 697,139 - PfGW456L13_603 0.72 -0.8 697,139 - PfGW456L13_603 0.72 +0.3 697,151 + PfGW456L13_603 0.74 +0.9 697,152 - PfGW456L13_603 0.74 -1.2 697,266 + -2.2 697,267 - -1.2 697,278 + -1.7 697,279 - -0.7 697,325 + +1.5 697,325 + +0.3 697,325 + +0.5 697,325 + -0.5 697,326 - +0.8 697,326 - -0.2 697,326 - -2.8 697,382 - -1.1 697,382 - -1.2 697,382 - -0.5 697,382 - -0.7 697,382 - -3.2 697,382 - -0.4 697,382 - -1.2 697,382 - -1.8 697,399 - +0.3 697,542 + PfGW456L13_604 0.20 +0.8 697,542 + PfGW456L13_604 0.20 -0.5 697,542 + PfGW456L13_604 0.20 -1.2 697,543 - PfGW456L13_604 0.20 +1.8 697,543 - PfGW456L13_604 0.20 +0.2 697,543 - PfGW456L13_604 0.20 +0.2 697,546 + PfGW456L13_604 0.20 -0.2 697,546 + PfGW456L13_604 0.20 -2.9 697,547 - PfGW456L13_604 0.21 -2.1 697,553 + PfGW456L13_604 0.21 +0.1 697,553 + PfGW456L13_604 0.21 -0.3 697,553 + PfGW456L13_604 0.21 +0.3 697,553 + PfGW456L13_604 0.21 -1.2 697,553 + PfGW456L13_604 0.21 +0.8 697,553 + PfGW456L13_604 0.21 -2.4 697,553 + PfGW456L13_604 0.21 -1.0 697,554 - PfGW456L13_604 0.22 -1.0 697,554 - PfGW456L13_604 0.22 -1.0 697,554 - PfGW456L13_604 0.22 +2.4 697,554 - PfGW456L13_604 0.22 +0.0 697,554 - PfGW456L13_604 0.22 +0.5 697,619 + PfGW456L13_604 0.30 -0.1 697,620 - PfGW456L13_604 0.30 -2.7
Or see this region's nucleotide sequence