Experiment: Lomefloxacin 0.0004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4784 and PfGW456L13_4785 are separated by 164 nucleotides PfGW456L13_4785 and PfGW456L13_4786 are separated by 27 nucleotides
PfGW456L13_4784 - transcriptional regulator, LuxR family, at 5,334,762 to 5,335,550
_4784
PfGW456L13_4785 - Ferredoxin-dependent glutamate synthase (EC 1.4.7.1), at 5,335,715 to 5,337,334
_4785
PfGW456L13_4786 - Phage protein, at 5,337,362 to 5,338,870
_4786
Position (kb) 5335
5336
5337
5338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5334.717 kb on - strand at 5334.743 kb on + strand at 5334.743 kb on + strand at 5334.743 kb on + strand at 5334.743 kb on + strand at 5334.743 kb on + strand at 5334.743 kb on + strand at 5334.744 kb on - strand at 5334.744 kb on - strand at 5334.744 kb on - strand at 5334.858 kb on + strand, within PfGW456L13_4784 at 5334.858 kb on + strand, within PfGW456L13_4784 at 5334.858 kb on + strand, within PfGW456L13_4784 at 5334.858 kb on + strand, within PfGW456L13_4784 at 5334.858 kb on + strand, within PfGW456L13_4784 at 5334.858 kb on + strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.859 kb on - strand, within PfGW456L13_4784 at 5334.969 kb on + strand, within PfGW456L13_4784 at 5334.969 kb on + strand, within PfGW456L13_4784 at 5334.970 kb on - strand, within PfGW456L13_4784 at 5334.985 kb on - strand, within PfGW456L13_4784 at 5335.002 kb on + strand, within PfGW456L13_4784 at 5335.002 kb on + strand, within PfGW456L13_4784 at 5335.002 kb on + strand, within PfGW456L13_4784 at 5335.002 kb on + strand, within PfGW456L13_4784 at 5335.002 kb on + strand, within PfGW456L13_4784 at 5335.003 kb on - strand, within PfGW456L13_4784 at 5335.003 kb on - strand, within PfGW456L13_4784 at 5335.003 kb on - strand, within PfGW456L13_4784 at 5335.003 kb on - strand, within PfGW456L13_4784 at 5335.083 kb on + strand, within PfGW456L13_4784 at 5335.083 kb on + strand, within PfGW456L13_4784 at 5335.084 kb on - strand, within PfGW456L13_4784 at 5335.084 kb on - strand, within PfGW456L13_4784 at 5335.087 kb on - strand, within PfGW456L13_4784 at 5335.095 kb on + strand, within PfGW456L13_4784 at 5335.096 kb on - strand, within PfGW456L13_4784 at 5335.267 kb on - strand, within PfGW456L13_4784 at 5335.482 kb on + strand at 5335.482 kb on + strand at 5335.482 kb on + strand at 5335.482 kb on + strand at 5335.482 kb on + strand at 5335.482 kb on + strand at 5335.483 kb on - strand at 5335.483 kb on - strand at 5335.483 kb on - strand at 5335.483 kb on - strand at 5335.483 kb on - strand at 5335.483 kb on - strand at 5335.483 kb on - strand at 5335.575 kb on + strand at 5335.575 kb on + strand at 5335.576 kb on - strand at 5335.611 kb on + strand at 5335.611 kb on + strand at 5335.688 kb on + strand at 5335.688 kb on + strand at 5335.689 kb on - strand at 5335.715 kb on - strand at 5335.893 kb on - strand, within PfGW456L13_4785 at 5335.952 kb on + strand, within PfGW456L13_4785 at 5335.952 kb on + strand, within PfGW456L13_4785 at 5335.952 kb on + strand, within PfGW456L13_4785 at 5335.953 kb on - strand, within PfGW456L13_4785 at 5335.953 kb on - strand, within PfGW456L13_4785 at 5336.069 kb on + strand, within PfGW456L13_4785 at 5336.069 kb on + strand, within PfGW456L13_4785 at 5336.070 kb on - strand, within PfGW456L13_4785 at 5336.070 kb on - strand, within PfGW456L13_4785 at 5336.070 kb on - strand, within PfGW456L13_4785 at 5336.070 kb on - strand, within PfGW456L13_4785 at 5336.174 kb on + strand, within PfGW456L13_4785 at 5336.194 kb on + strand, within PfGW456L13_4785 at 5336.307 kb on - strand, within PfGW456L13_4785 at 5336.355 kb on - strand, within PfGW456L13_4785 at 5336.427 kb on + strand, within PfGW456L13_4785 at 5336.427 kb on + strand, within PfGW456L13_4785 at 5336.428 kb on - strand, within PfGW456L13_4785 at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.179 kb on - strand at 5337.179 kb on - strand at 5337.179 kb on - strand at 5337.179 kb on - strand at 5337.179 kb on - strand at 5337.269 kb on + strand at 5337.269 kb on + strand at 5337.269 kb on + strand at 5337.302 kb on - strand at 5337.302 kb on - strand at 5337.322 kb on - strand at 5337.407 kb on - strand at 5337.429 kb on + strand at 5337.429 kb on + strand at 5337.430 kb on - strand at 5337.430 kb on - strand at 5337.430 kb on - strand at 5337.558 kb on + strand, within PfGW456L13_4786 at 5337.558 kb on + strand, within PfGW456L13_4786 at 5337.558 kb on + strand, within PfGW456L13_4786 at 5337.559 kb on - strand, within PfGW456L13_4786 at 5337.559 kb on - strand, within PfGW456L13_4786 at 5337.559 kb on - strand, within PfGW456L13_4786 at 5337.559 kb on - strand, within PfGW456L13_4786 at 5337.579 kb on + strand, within PfGW456L13_4786 at 5337.579 kb on + strand, within PfGW456L13_4786 at 5337.580 kb on - strand, within PfGW456L13_4786 at 5337.580 kb on - strand, within PfGW456L13_4786 at 5337.580 kb on - strand, within PfGW456L13_4786 at 5337.654 kb on + strand, within PfGW456L13_4786 at 5337.655 kb on - strand, within PfGW456L13_4786 at 5337.655 kb on - strand, within PfGW456L13_4786 at 5337.655 kb on - strand, within PfGW456L13_4786 at 5337.655 kb on - strand, within PfGW456L13_4786 at 5337.655 kb on - strand, within PfGW456L13_4786 at 5337.700 kb on - strand, within PfGW456L13_4786 at 5337.760 kb on - strand, within PfGW456L13_4786 at 5337.760 kb on - strand, within PfGW456L13_4786 at 5337.852 kb on + strand, within PfGW456L13_4786 at 5337.852 kb on + strand, within PfGW456L13_4786 at 5337.853 kb on - strand, within PfGW456L13_4786 at 5337.853 kb on - strand, within PfGW456L13_4786 at 5337.853 kb on - strand, within PfGW456L13_4786 at 5337.853 kb on - strand, within PfGW456L13_4786 at 5338.224 kb on + strand, within PfGW456L13_4786 at 5338.224 kb on + strand, within PfGW456L13_4786 at 5338.225 kb on - strand, within PfGW456L13_4786 at 5338.225 kb on - strand, within PfGW456L13_4786 at 5338.225 kb on - strand, within PfGW456L13_4786 at 5338.225 kb on - strand, within PfGW456L13_4786 at 5338.284 kb on - strand, within PfGW456L13_4786 at 5338.297 kb on + strand, within PfGW456L13_4786 at 5338.297 kb on + strand, within PfGW456L13_4786
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0004 mM remove 5,334,717 - -0.6 5,334,743 + -1.0 5,334,743 + +0.6 5,334,743 + +1.1 5,334,743 + -1.4 5,334,743 + -1.1 5,334,743 + +1.9 5,334,744 - +0.1 5,334,744 - -1.4 5,334,744 - +1.0 5,334,858 + PfGW456L13_4784 0.12 -0.0 5,334,858 + PfGW456L13_4784 0.12 -3.5 5,334,858 + PfGW456L13_4784 0.12 -1.5 5,334,858 + PfGW456L13_4784 0.12 +0.8 5,334,858 + PfGW456L13_4784 0.12 +0.4 5,334,858 + PfGW456L13_4784 0.12 -0.8 5,334,859 - PfGW456L13_4784 0.12 -0.1 5,334,859 - PfGW456L13_4784 0.12 -0.9 5,334,859 - PfGW456L13_4784 0.12 -1.4 5,334,859 - PfGW456L13_4784 0.12 -2.8 5,334,859 - PfGW456L13_4784 0.12 +0.3 5,334,859 - PfGW456L13_4784 0.12 -0.9 5,334,859 - PfGW456L13_4784 0.12 +0.5 5,334,859 - PfGW456L13_4784 0.12 +0.6 5,334,859 - PfGW456L13_4784 0.12 +0.1 5,334,859 - PfGW456L13_4784 0.12 +0.1 5,334,969 + PfGW456L13_4784 0.26 -0.9 5,334,969 + PfGW456L13_4784 0.26 +0.7 5,334,970 - PfGW456L13_4784 0.26 -0.4 5,334,985 - PfGW456L13_4784 0.28 -0.9 5,335,002 + PfGW456L13_4784 0.30 -1.0 5,335,002 + PfGW456L13_4784 0.30 -1.0 5,335,002 + PfGW456L13_4784 0.30 +1.1 5,335,002 + PfGW456L13_4784 0.30 +0.2 5,335,002 + PfGW456L13_4784 0.30 -0.2 5,335,003 - PfGW456L13_4784 0.31 -0.6 5,335,003 - PfGW456L13_4784 0.31 +0.3 5,335,003 - PfGW456L13_4784 0.31 +1.6 5,335,003 - PfGW456L13_4784 0.31 -0.7 5,335,083 + PfGW456L13_4784 0.41 -1.5 5,335,083 + PfGW456L13_4784 0.41 -0.7 5,335,084 - PfGW456L13_4784 0.41 -0.0 5,335,084 - PfGW456L13_4784 0.41 +0.8 5,335,087 - PfGW456L13_4784 0.41 -1.0 5,335,095 + PfGW456L13_4784 0.42 +0.5 5,335,096 - PfGW456L13_4784 0.42 -0.7 5,335,267 - PfGW456L13_4784 0.64 -1.3 5,335,482 + +0.1 5,335,482 + -1.4 5,335,482 + -0.3 5,335,482 + -1.5 5,335,482 + -2.1 5,335,482 + +1.0 5,335,483 - +0.2 5,335,483 - -0.2 5,335,483 - -0.3 5,335,483 - -1.0 5,335,483 - +0.1 5,335,483 - -0.7 5,335,483 - -0.1 5,335,575 + +2.3 5,335,575 + +0.5 5,335,576 - +0.6 5,335,611 + -1.5 5,335,611 + -1.0 5,335,688 + +1.8 5,335,688 + -0.8 5,335,689 - -1.0 5,335,715 - -1.3 5,335,893 - PfGW456L13_4785 0.11 +0.5 5,335,952 + PfGW456L13_4785 0.15 -2.3 5,335,952 + PfGW456L13_4785 0.15 -0.7 5,335,952 + PfGW456L13_4785 0.15 +1.5 5,335,953 - PfGW456L13_4785 0.15 +1.5 5,335,953 - PfGW456L13_4785 0.15 -1.0 5,336,069 + PfGW456L13_4785 0.22 +0.1 5,336,069 + PfGW456L13_4785 0.22 +0.3 5,336,070 - PfGW456L13_4785 0.22 -0.7 5,336,070 - PfGW456L13_4785 0.22 -0.9 5,336,070 - PfGW456L13_4785 0.22 -0.8 5,336,070 - PfGW456L13_4785 0.22 -0.1 5,336,174 + PfGW456L13_4785 0.28 +0.3 5,336,194 + PfGW456L13_4785 0.30 +0.5 5,336,307 - PfGW456L13_4785 0.37 -0.4 5,336,355 - PfGW456L13_4785 0.40 +1.7 5,336,427 + PfGW456L13_4785 0.44 -0.6 5,336,427 + PfGW456L13_4785 0.44 -0.6 5,336,428 - PfGW456L13_4785 0.44 -0.1 5,337,178 + -0.6 5,337,178 + -0.6 5,337,178 + -3.4 5,337,178 + +1.7 5,337,178 + -1.4 5,337,178 + -1.2 5,337,178 + +1.5 5,337,178 + +0.2 5,337,178 + -0.9 5,337,179 - +1.6 5,337,179 - -3.0 5,337,179 - -1.7 5,337,179 - +1.4 5,337,179 - +0.3 5,337,269 + +0.7 5,337,269 + +1.6 5,337,269 + -0.2 5,337,302 - -1.6 5,337,302 - -1.7 5,337,322 - +0.3 5,337,407 - +0.2 5,337,429 + -1.0 5,337,429 + -0.9 5,337,430 - -0.7 5,337,430 - +0.3 5,337,430 - +1.7 5,337,558 + PfGW456L13_4786 0.13 -0.5 5,337,558 + PfGW456L13_4786 0.13 +1.5 5,337,558 + PfGW456L13_4786 0.13 -0.0 5,337,559 - PfGW456L13_4786 0.13 +0.3 5,337,559 - PfGW456L13_4786 0.13 -1.3 5,337,559 - PfGW456L13_4786 0.13 -1.5 5,337,559 - PfGW456L13_4786 0.13 +2.3 5,337,579 + PfGW456L13_4786 0.14 +0.9 5,337,579 + PfGW456L13_4786 0.14 -1.3 5,337,580 - PfGW456L13_4786 0.14 +2.5 5,337,580 - PfGW456L13_4786 0.14 -0.1 5,337,580 - PfGW456L13_4786 0.14 +0.3 5,337,654 + PfGW456L13_4786 0.19 -0.0 5,337,655 - PfGW456L13_4786 0.19 +0.2 5,337,655 - PfGW456L13_4786 0.19 -0.4 5,337,655 - PfGW456L13_4786 0.19 -1.4 5,337,655 - PfGW456L13_4786 0.19 -0.3 5,337,655 - PfGW456L13_4786 0.19 -0.5 5,337,700 - PfGW456L13_4786 0.22 +0.9 5,337,760 - PfGW456L13_4786 0.26 -0.8 5,337,760 - PfGW456L13_4786 0.26 -1.9 5,337,852 + PfGW456L13_4786 0.32 +1.8 5,337,852 + PfGW456L13_4786 0.32 -2.1 5,337,853 - PfGW456L13_4786 0.33 +0.3 5,337,853 - PfGW456L13_4786 0.33 -0.7 5,337,853 - PfGW456L13_4786 0.33 -0.1 5,337,853 - PfGW456L13_4786 0.33 +0.5 5,338,224 + PfGW456L13_4786 0.57 -1.2 5,338,224 + PfGW456L13_4786 0.57 -0.7 5,338,225 - PfGW456L13_4786 0.57 -0.6 5,338,225 - PfGW456L13_4786 0.57 -0.4 5,338,225 - PfGW456L13_4786 0.57 +0.3 5,338,225 - PfGW456L13_4786 0.57 -2.3 5,338,284 - PfGW456L13_4786 0.61 -1.3 5,338,297 + PfGW456L13_4786 0.62 +0.2 5,338,297 + PfGW456L13_4786 0.62 -0.9
Or see this region's nucleotide sequence