Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4183

Experiment: Lomefloxacin 0.0004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4182 and PfGW456L13_4183 are separated by 124 nucleotidesPfGW456L13_4183 and PfGW456L13_4184 are separated by 65 nucleotides PfGW456L13_4182 - Allantoicase (EC 3.5.3.4), at 4,693,667 to 4,694,662 _4182 PfGW456L13_4183 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 4,694,787 to 4,695,290 _4183 PfGW456L13_4184 - FIG137887: membrane protein related to purine degradation, at 4,695,356 to 4,696,645 _4184 Position (kb) 4694 4695 4696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4693.798 kb on - strand, within PfGW456L13_4182at 4694.069 kb on + strand, within PfGW456L13_4182at 4694.069 kb on + strand, within PfGW456L13_4182at 4694.120 kb on + strand, within PfGW456L13_4182at 4694.121 kb on - strand, within PfGW456L13_4182at 4694.154 kb on - strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.273 kb on - strand, within PfGW456L13_4182at 4694.426 kb on + strandat 4694.427 kb on - strand, within PfGW456L13_4182at 4694.569 kb on + strandat 4694.569 kb on + strandat 4694.569 kb on + strandat 4694.569 kb on + strandat 4694.570 kb on - strandat 4694.657 kb on - strandat 4694.657 kb on - strandat 4694.660 kb on + strandat 4694.660 kb on + strandat 4694.661 kb on - strandat 4694.661 kb on - strandat 4694.661 kb on - strandat 4694.661 kb on - strandat 4694.752 kb on + strandat 4694.753 kb on - strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.907 kb on - strand, within PfGW456L13_4183at 4694.907 kb on - strand, within PfGW456L13_4183at 4694.907 kb on - strand, within PfGW456L13_4183at 4694.907 kb on - strand, within PfGW456L13_4183at 4695.094 kb on + strand, within PfGW456L13_4183at 4695.095 kb on - strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.144 kb on + strand, within PfGW456L13_4183at 4695.144 kb on + strand, within PfGW456L13_4183at 4695.144 kb on + strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.288 kb on + strandat 4695.289 kb on - strandat 4695.289 kb on - strandat 4695.334 kb on - strandat 4695.334 kb on - strandat 4695.398 kb on - strandat 4695.398 kb on - strandat 4695.398 kb on - strandat 4695.428 kb on + strandat 4695.515 kb on - strand, within PfGW456L13_4184at 4695.515 kb on - strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.519 kb on - strand, within PfGW456L13_4184at 4695.519 kb on - strand, within PfGW456L13_4184at 4695.519 kb on - strand, within PfGW456L13_4184at 4695.533 kb on + strand, within PfGW456L13_4184at 4695.534 kb on - strand, within PfGW456L13_4184at 4695.534 kb on - strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.636 kb on - strand, within PfGW456L13_4184at 4695.654 kb on - strand, within PfGW456L13_4184at 4695.654 kb on - strand, within PfGW456L13_4184at 4695.737 kb on + strand, within PfGW456L13_4184at 4695.737 kb on + strand, within PfGW456L13_4184at 4695.738 kb on - strand, within PfGW456L13_4184at 4695.821 kb on + strand, within PfGW456L13_4184at 4695.857 kb on + strand, within PfGW456L13_4184at 4695.858 kb on - strand, within PfGW456L13_4184at 4695.858 kb on - strand, within PfGW456L13_4184at 4695.858 kb on - strand, within PfGW456L13_4184at 4696.016 kb on + strand, within PfGW456L13_4184at 4696.016 kb on + strand, within PfGW456L13_4184at 4696.016 kb on + strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.017 kb on - strand, within PfGW456L13_4184at 4696.070 kb on + strand, within PfGW456L13_4184at 4696.070 kb on + strand, within PfGW456L13_4184at 4696.071 kb on - strand, within PfGW456L13_4184at 4696.082 kb on + strand, within PfGW456L13_4184at 4696.082 kb on + strand, within PfGW456L13_4184at 4696.082 kb on + strand, within PfGW456L13_4184at 4696.083 kb on - strand, within PfGW456L13_4184at 4696.083 kb on - strand, within PfGW456L13_4184at 4696.083 kb on - strand, within PfGW456L13_4184at 4696.083 kb on - strand, within PfGW456L13_4184at 4696.083 kb on - strand, within PfGW456L13_4184at 4696.083 kb on - strand, within PfGW456L13_4184at 4696.083 kb on - strand, within PfGW456L13_4184at 4696.136 kb on + strand, within PfGW456L13_4184at 4696.137 kb on - strand, within PfGW456L13_4184at 4696.137 kb on - strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strand, within PfGW456L13_4184at 4696.214 kb on + strandat 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184at 4696.215 kb on - strand, within PfGW456L13_4184

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0004 mM
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4,693,798 - PfGW456L13_4182 0.13 +1.9
4,694,069 + PfGW456L13_4182 0.40 -1.4
4,694,069 + PfGW456L13_4182 0.40 +0.0
4,694,120 + PfGW456L13_4182 0.45 +0.0
4,694,121 - PfGW456L13_4182 0.46 -0.7
4,694,154 - PfGW456L13_4182 0.49 -0.8
4,694,272 + PfGW456L13_4182 0.61 -0.5
4,694,272 + PfGW456L13_4182 0.61 -1.9
4,694,272 + PfGW456L13_4182 0.61 -0.7
4,694,272 + PfGW456L13_4182 0.61 -2.4
4,694,273 - PfGW456L13_4182 0.61 -1.0
4,694,426 + +3.4
4,694,427 - PfGW456L13_4182 0.76 -0.1
4,694,569 + -0.2
4,694,569 + +0.2
4,694,569 + -1.5
4,694,569 + +1.0
4,694,570 - -0.4
4,694,657 - -0.2
4,694,657 - +1.8
4,694,660 + +0.0
4,694,660 + +0.4
4,694,661 - -1.6
4,694,661 - -2.6
4,694,661 - +1.1
4,694,661 - -2.0
4,694,752 + +0.8
4,694,753 - -0.9
4,694,758 + -1.9
4,694,758 + +0.5
4,694,758 + -0.2
4,694,758 + -0.5
4,694,758 + -0.8
4,694,758 + -1.8
4,694,758 + -1.0
4,694,758 + +0.5
4,694,759 - +1.0
4,694,759 - -2.0
4,694,759 - -1.5
4,694,759 - +0.0
4,694,759 - +1.1
4,694,759 - -1.2
4,694,759 - -1.8
4,694,759 - +2.0
4,694,759 - -2.1
4,694,759 - +0.5
4,694,907 - PfGW456L13_4183 0.24 -0.7
4,694,907 - PfGW456L13_4183 0.24 +0.3
4,694,907 - PfGW456L13_4183 0.24 -0.4
4,694,907 - PfGW456L13_4183 0.24 -0.1
4,695,094 + PfGW456L13_4183 0.61 +2.3
4,695,095 - PfGW456L13_4183 0.61 -0.0
4,695,140 + PfGW456L13_4183 0.70 +0.3
4,695,140 + PfGW456L13_4183 0.70 -1.6
4,695,140 + PfGW456L13_4183 0.70 -0.5
4,695,140 + PfGW456L13_4183 0.70 -0.7
4,695,140 + PfGW456L13_4183 0.70 +1.0
4,695,140 + PfGW456L13_4183 0.70 -0.5
4,695,140 + PfGW456L13_4183 0.70 +0.0
4,695,140 + PfGW456L13_4183 0.70 -0.6
4,695,140 + PfGW456L13_4183 0.70 -2.3
4,695,140 + PfGW456L13_4183 0.70 +1.8
4,695,140 + PfGW456L13_4183 0.70 +0.3
4,695,141 - PfGW456L13_4183 0.70 -1.7
4,695,141 - PfGW456L13_4183 0.70 -0.4
4,695,141 - PfGW456L13_4183 0.70 +1.5
4,695,141 - PfGW456L13_4183 0.70 -1.9
4,695,141 - PfGW456L13_4183 0.70 -2.4
4,695,141 - PfGW456L13_4183 0.70 +1.1
4,695,141 - PfGW456L13_4183 0.70 +0.7
4,695,144 + PfGW456L13_4183 0.71 -0.6
4,695,144 + PfGW456L13_4183 0.71 -0.1
4,695,144 + PfGW456L13_4183 0.71 +0.7
4,695,145 - PfGW456L13_4183 0.71 +2.0
4,695,145 - PfGW456L13_4183 0.71 -1.7
4,695,145 - PfGW456L13_4183 0.71 +0.7
4,695,145 - PfGW456L13_4183 0.71 +1.1
4,695,145 - PfGW456L13_4183 0.71 -3.4
4,695,231 - PfGW456L13_4183 0.88 +0.6
4,695,231 - PfGW456L13_4183 0.88 -0.7
4,695,231 - PfGW456L13_4183 0.88 +2.6
4,695,231 - PfGW456L13_4183 0.88 +0.5
4,695,231 - PfGW456L13_4183 0.88 -1.4
4,695,288 + -0.6
4,695,289 - +0.8
4,695,289 - +0.2
4,695,334 - -0.1
4,695,334 - -1.9
4,695,398 - +0.2
4,695,398 - +0.6
4,695,398 - -0.8
4,695,428 + -1.2
4,695,515 - PfGW456L13_4184 0.12 +0.5
4,695,515 - PfGW456L13_4184 0.12 +2.2
4,695,518 + PfGW456L13_4184 0.13 +0.1
4,695,518 + PfGW456L13_4184 0.13 -2.1
4,695,518 + PfGW456L13_4184 0.13 -1.5
4,695,518 + PfGW456L13_4184 0.13 +0.0
4,695,518 + PfGW456L13_4184 0.13 +1.0
4,695,519 - PfGW456L13_4184 0.13 -0.2
4,695,519 - PfGW456L13_4184 0.13 +0.0
4,695,519 - PfGW456L13_4184 0.13 +1.1
4,695,533 + PfGW456L13_4184 0.14 -1.4
4,695,534 - PfGW456L13_4184 0.14 +1.8
4,695,534 - PfGW456L13_4184 0.14 -0.1
4,695,590 + PfGW456L13_4184 0.18 -0.1
4,695,590 + PfGW456L13_4184 0.18 +0.2
4,695,590 + PfGW456L13_4184 0.18 -0.5
4,695,590 + PfGW456L13_4184 0.18 +2.2
4,695,590 + PfGW456L13_4184 0.18 -0.2
4,695,591 - PfGW456L13_4184 0.18 -2.1
4,695,591 - PfGW456L13_4184 0.18 -1.0
4,695,591 - PfGW456L13_4184 0.18 -0.2
4,695,591 - PfGW456L13_4184 0.18 +0.9
4,695,591 - PfGW456L13_4184 0.18 -0.7
4,695,635 + PfGW456L13_4184 0.22 -2.3
4,695,635 + PfGW456L13_4184 0.22 -0.8
4,695,635 + PfGW456L13_4184 0.22 -0.4
4,695,635 + PfGW456L13_4184 0.22 +1.8
4,695,636 - PfGW456L13_4184 0.22 +0.5
4,695,654 - PfGW456L13_4184 0.23 -1.0
4,695,654 - PfGW456L13_4184 0.23 -1.2
4,695,737 + PfGW456L13_4184 0.30 +0.3
4,695,737 + PfGW456L13_4184 0.30 -1.2
4,695,738 - PfGW456L13_4184 0.30 -2.1
4,695,821 + PfGW456L13_4184 0.36 +0.8
4,695,857 + PfGW456L13_4184 0.39 -1.5
4,695,858 - PfGW456L13_4184 0.39 +1.1
4,695,858 - PfGW456L13_4184 0.39 -0.3
4,695,858 - PfGW456L13_4184 0.39 +0.0
4,696,016 + PfGW456L13_4184 0.51 +0.8
4,696,016 + PfGW456L13_4184 0.51 -0.7
4,696,016 + PfGW456L13_4184 0.51 +1.4
4,696,017 - PfGW456L13_4184 0.51 -1.5
4,696,017 - PfGW456L13_4184 0.51 +1.0
4,696,017 - PfGW456L13_4184 0.51 +0.5
4,696,017 - PfGW456L13_4184 0.51 -0.5
4,696,017 - PfGW456L13_4184 0.51 +0.8
4,696,017 - PfGW456L13_4184 0.51 -0.1
4,696,017 - PfGW456L13_4184 0.51 -0.2
4,696,017 - PfGW456L13_4184 0.51 -0.4
4,696,017 - PfGW456L13_4184 0.51 -1.9
4,696,070 + PfGW456L13_4184 0.55 -0.2
4,696,070 + PfGW456L13_4184 0.55 +0.2
4,696,071 - PfGW456L13_4184 0.55 -0.4
4,696,082 + PfGW456L13_4184 0.56 -1.8
4,696,082 + PfGW456L13_4184 0.56 -0.4
4,696,082 + PfGW456L13_4184 0.56 -1.0
4,696,083 - PfGW456L13_4184 0.56 -2.1
4,696,083 - PfGW456L13_4184 0.56 +0.6
4,696,083 - PfGW456L13_4184 0.56 +1.2
4,696,083 - PfGW456L13_4184 0.56 -2.4
4,696,083 - PfGW456L13_4184 0.56 +0.4
4,696,083 - PfGW456L13_4184 0.56 +0.0
4,696,083 - PfGW456L13_4184 0.56 +1.9
4,696,136 + PfGW456L13_4184 0.60 +0.4
4,696,137 - PfGW456L13_4184 0.61 +0.4
4,696,137 - PfGW456L13_4184 0.61 -0.3
4,696,214 + PfGW456L13_4184 0.67 +0.7
4,696,214 + PfGW456L13_4184 0.67 +0.4
4,696,214 + PfGW456L13_4184 0.67 -1.5
4,696,214 + PfGW456L13_4184 0.67 +0.7
4,696,214 + PfGW456L13_4184 0.67 -0.7
4,696,214 + PfGW456L13_4184 0.67 -0.2
4,696,214 + PfGW456L13_4184 0.67 +0.5
4,696,214 + PfGW456L13_4184 0.67 -1.3
4,696,214 + PfGW456L13_4184 0.67 +0.8
4,696,214 + +0.2
4,696,215 - PfGW456L13_4184 0.67 -0.5
4,696,215 - PfGW456L13_4184 0.67 -0.5
4,696,215 - PfGW456L13_4184 0.67 -1.6
4,696,215 - PfGW456L13_4184 0.67 -1.4
4,696,215 - PfGW456L13_4184 0.67 -1.0
4,696,215 - PfGW456L13_4184 0.67 +0.3
4,696,215 - PfGW456L13_4184 0.67 +1.0
4,696,215 - PfGW456L13_4184 0.67 -1.5
4,696,215 - PfGW456L13_4184 0.67 -1.0
4,696,215 - PfGW456L13_4184 0.67 -1.0
4,696,215 - PfGW456L13_4184 0.67 +0.7

Or see this region's nucleotide sequence