Strain Fitness in Pseudomonas sp. RS175 around PFR28_05190

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05188 and PFR28_05189 overlap by 4 nucleotidesPFR28_05189 and PFR28_05190 overlap by 4 nucleotidesPFR28_05190 and PFR28_05191 are separated by 306 nucleotidesPFR28_05191 and PFR28_05192 overlap by 4 nucleotidesPFR28_05192 and PFR28_05193 are separated by 80 nucleotides PFR28_05188: PFR28_05188 - Hemin transport system permease protein HmuU, at 5,936,615 to 5,937,625 _05188 PFR28_05189: PFR28_05189 - Vitamin B12-binding protein, at 5,937,622 to 5,938,569 _05189 PFR28_05190: PFR28_05190 - Fe(3+) dicitrate transport ATP-binding protein FecE, at 5,938,566 to 5,939,354 _05190 PFR28_05191: PFR28_05191 - hypothetical protein, at 5,939,661 to 5,939,966 _05191 PFR28_05192: PFR28_05192 - hypothetical protein, at 5,939,963 to 5,940,064 _05192 PFR28_05193: PFR28_05193 - hypothetical protein, at 5,940,145 to 5,940,489 _05193 Position (kb) 5938 5939 5940Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5937.664 kb on + strandat 5937.665 kb on - strandat 5937.665 kb on - strandat 5937.695 kb on + strandat 5937.695 kb on + strandat 5937.695 kb on + strandat 5937.695 kb on + strandat 5937.695 kb on + strandat 5937.696 kb on - strandat 5937.696 kb on - strandat 5937.968 kb on + strand, within PFR28_05189at 5937.968 kb on + strand, within PFR28_05189at 5937.969 kb on - strand, within PFR28_05189at 5938.098 kb on + strand, within PFR28_05189at 5938.099 kb on - strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.100 kb on + strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.101 kb on - strand, within PFR28_05189at 5938.104 kb on + strand, within PFR28_05189at 5938.104 kb on + strand, within PFR28_05189at 5938.104 kb on + strand, within PFR28_05189at 5938.105 kb on - strand, within PFR28_05189at 5938.105 kb on - strand, within PFR28_05189at 5938.105 kb on - strand, within PFR28_05189at 5938.105 kb on - strand, within PFR28_05189at 5938.105 kb on - strand, within PFR28_05189at 5938.163 kb on + strand, within PFR28_05189at 5938.164 kb on - strand, within PFR28_05189at 5938.164 kb on - strand, within PFR28_05189at 5938.286 kb on + strand, within PFR28_05189at 5938.286 kb on + strand, within PFR28_05189at 5938.287 kb on - strand, within PFR28_05189at 5938.287 kb on - strand, within PFR28_05189at 5938.717 kb on + strand, within PFR28_05190at 5938.717 kb on + strand, within PFR28_05190at 5938.717 kb on + strand, within PFR28_05190at 5938.718 kb on - strand, within PFR28_05190at 5938.718 kb on - strand, within PFR28_05190at 5939.021 kb on + strand, within PFR28_05190at 5939.022 kb on - strand, within PFR28_05190at 5939.046 kb on + strand, within PFR28_05190at 5939.047 kb on - strand, within PFR28_05190at 5939.143 kb on + strand, within PFR28_05190at 5939.143 kb on + strand, within PFR28_05190at 5939.143 kb on + strand, within PFR28_05190at 5939.143 kb on + strand, within PFR28_05190at 5939.144 kb on - strand, within PFR28_05190at 5939.144 kb on - strand, within PFR28_05190at 5939.144 kb on - strand, within PFR28_05190at 5939.144 kb on - strand, within PFR28_05190at 5939.144 kb on - strand, within PFR28_05190at 5939.144 kb on - strand, within PFR28_05190at 5939.144 kb on - strand, within PFR28_05190at 5939.360 kb on + strandat 5939.360 kb on + strandat 5939.360 kb on + strandat 5939.360 kb on + strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.361 kb on - strandat 5939.430 kb on + strandat 5939.430 kb on + strandat 5939.431 kb on - strandat 5939.431 kb on - strandat 5939.431 kb on - strandat 5939.431 kb on - strandat 5939.479 kb on + strandat 5939.479 kb on + strandat 5939.480 kb on - strandat 5939.532 kb on + strandat 5939.532 kb on + strandat 5939.533 kb on - strandat 5939.567 kb on + strandat 5939.568 kb on - strandat 5939.568 kb on - strandat 5939.568 kb on - strandat 5939.591 kb on + strandat 5939.592 kb on - strandat 5939.592 kb on - strandat 5939.601 kb on + strandat 5939.601 kb on + strandat 5939.622 kb on + strandat 5939.623 kb on - strandat 5939.623 kb on - strandat 5939.640 kb on - strandat 5939.674 kb on + strandat 5939.675 kb on - strandat 5939.684 kb on + strandat 5939.685 kb on - strandat 5939.685 kb on - strandat 5939.685 kb on - strandat 5939.708 kb on + strand, within PFR28_05191at 5939.709 kb on - strand, within PFR28_05191at 5939.709 kb on - strand, within PFR28_05191at 5939.709 kb on - strand, within PFR28_05191at 5939.709 kb on - strand, within PFR28_05191at 5939.853 kb on - strand, within PFR28_05191at 5939.915 kb on + strand, within PFR28_05191at 5939.916 kb on - strand, within PFR28_05191at 5939.936 kb on + strandat 5939.936 kb on + strandat 5940.216 kb on + strand, within PFR28_05193at 5940.216 kb on + strand, within PFR28_05193at 5940.216 kb on + strand, within PFR28_05193at 5940.216 kb on + strand, within PFR28_05193at 5940.217 kb on - strand, within PFR28_05193

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 2.5 mM
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5,937,664 + -2.0
5,937,665 - +1.1
5,937,665 - -0.0
5,937,695 + +1.0
5,937,695 + +1.3
5,937,695 + +1.2
5,937,695 + +2.2
5,937,695 + -2.0
5,937,696 - +1.0
5,937,696 - -0.9
5,937,968 + PFR28_05189 0.36 +0.7
5,937,968 + PFR28_05189 0.36 -4.0
5,937,969 - PFR28_05189 0.37 +0.5
5,938,098 + PFR28_05189 0.50 -0.4
5,938,099 - PFR28_05189 0.50 +0.9
5,938,100 + PFR28_05189 0.50 -2.3
5,938,100 + PFR28_05189 0.50 -2.9
5,938,100 + PFR28_05189 0.50 +1.0
5,938,100 + PFR28_05189 0.50 +0.9
5,938,100 + PFR28_05189 0.50 +0.5
5,938,100 + PFR28_05189 0.50 -2.7
5,938,100 + PFR28_05189 0.50 +0.7
5,938,100 + PFR28_05189 0.50 +1.1
5,938,100 + PFR28_05189 0.50 +0.4
5,938,100 + PFR28_05189 0.50 +1.6
5,938,100 + PFR28_05189 0.50 +2.0
5,938,100 + PFR28_05189 0.50 -2.0
5,938,100 + PFR28_05189 0.50 +0.8
5,938,101 - PFR28_05189 0.51 +0.8
5,938,101 - PFR28_05189 0.51 -0.6
5,938,101 - PFR28_05189 0.51 -2.0
5,938,101 - PFR28_05189 0.51 -1.7
5,938,101 - PFR28_05189 0.51 +1.0
5,938,101 - PFR28_05189 0.51 -1.0
5,938,101 - PFR28_05189 0.51 +1.5
5,938,101 - PFR28_05189 0.51 +0.8
5,938,101 - PFR28_05189 0.51 -2.2
5,938,101 - PFR28_05189 0.51 +0.4
5,938,101 - PFR28_05189 0.51 +0.5
5,938,101 - PFR28_05189 0.51 -0.4
5,938,101 - PFR28_05189 0.51 +0.1
5,938,101 - PFR28_05189 0.51 +1.0
5,938,104 + PFR28_05189 0.51 -3.0
5,938,104 + PFR28_05189 0.51 -0.0
5,938,104 + PFR28_05189 0.51 -2.7
5,938,105 - PFR28_05189 0.51 +1.3
5,938,105 - PFR28_05189 0.51 -2.4
5,938,105 - PFR28_05189 0.51 -1.5
5,938,105 - PFR28_05189 0.51 -1.2
5,938,105 - PFR28_05189 0.51 +1.0
5,938,163 + PFR28_05189 0.57 -2.5
5,938,164 - PFR28_05189 0.57 +0.9
5,938,164 - PFR28_05189 0.57 -1.4
5,938,286 + PFR28_05189 0.70 -1.0
5,938,286 + PFR28_05189 0.70 +0.4
5,938,287 - PFR28_05189 0.70 -0.4
5,938,287 - PFR28_05189 0.70 -2.7
5,938,717 + PFR28_05190 0.19 +0.4
5,938,717 + PFR28_05190 0.19 +1.0
5,938,717 + PFR28_05190 0.19 +0.9
5,938,718 - PFR28_05190 0.19 -1.0
5,938,718 - PFR28_05190 0.19 -2.9
5,939,021 + PFR28_05190 0.58 +0.7
5,939,022 - PFR28_05190 0.58 +1.5
5,939,046 + PFR28_05190 0.61 +0.8
5,939,047 - PFR28_05190 0.61 +2.1
5,939,143 + PFR28_05190 0.73 -0.9
5,939,143 + PFR28_05190 0.73 +1.0
5,939,143 + PFR28_05190 0.73 -1.6
5,939,143 + PFR28_05190 0.73 +3.4
5,939,144 - PFR28_05190 0.73 +2.4
5,939,144 - PFR28_05190 0.73 +1.6
5,939,144 - PFR28_05190 0.73 +2.6
5,939,144 - PFR28_05190 0.73 -2.1
5,939,144 - PFR28_05190 0.73 +0.4
5,939,144 - PFR28_05190 0.73 -2.3
5,939,144 - PFR28_05190 0.73 -0.3
5,939,360 + +2.3
5,939,360 + +2.0
5,939,360 + -1.4
5,939,360 + +0.4
5,939,361 - +1.5
5,939,361 - +1.3
5,939,361 - +0.9
5,939,361 - +0.3
5,939,361 - +0.9
5,939,361 - -2.4
5,939,361 - +3.4
5,939,361 - -0.4
5,939,361 - +0.3
5,939,361 - -0.0
5,939,430 + +1.5
5,939,430 + -3.4
5,939,431 - +2.4
5,939,431 - -1.4
5,939,431 - +0.7
5,939,431 - +0.6
5,939,479 + +1.2
5,939,479 + -1.4
5,939,480 - -4.2
5,939,532 + +0.0
5,939,532 + -2.5
5,939,533 - -3.0
5,939,567 + -0.9
5,939,568 - +2.0
5,939,568 - -0.3
5,939,568 - +0.0
5,939,591 + -1.6
5,939,592 - -0.1
5,939,592 - -0.2
5,939,601 + +2.2
5,939,601 + +2.5
5,939,622 + +0.5
5,939,623 - -1.9
5,939,623 - -4.2
5,939,640 - +0.5
5,939,674 + -0.4
5,939,675 - -1.2
5,939,684 + -0.4
5,939,685 - -3.0
5,939,685 - +2.3
5,939,685 - +1.4
5,939,708 + PFR28_05191 0.15 +0.9
5,939,709 - PFR28_05191 0.16 +0.2
5,939,709 - PFR28_05191 0.16 -2.7
5,939,709 - PFR28_05191 0.16 -1.8
5,939,709 - PFR28_05191 0.16 -2.4
5,939,853 - PFR28_05191 0.63 -1.4
5,939,915 + PFR28_05191 0.83 -1.0
5,939,916 - PFR28_05191 0.83 -2.2
5,939,936 + +2.0
5,939,936 + +1.4
5,940,216 + PFR28_05193 0.21 -0.3
5,940,216 + PFR28_05193 0.21 +1.8
5,940,216 + PFR28_05193 0.21 -1.7
5,940,216 + PFR28_05193 0.21 +0.5
5,940,217 - PFR28_05193 0.21 -1.3

Or see this region's nucleotide sequence