Strain Fitness in Pseudomonas sp. RS175 around PFR28_03329

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 2.5 mM
3,834,925	+		PFR28_03328	0.24	-0.3
3,834,925	+		PFR28_03328	0.24	-4.0
3,834,925	+		PFR28_03328	0.24	+2.1
3,834,926	-		PFR28_03328	0.24	-1.0
3,834,926	-		PFR28_03328	0.24	+1.4
3,834,926	-		PFR28_03328	0.24	-0.7
3,834,991	+		PFR28_03328	0.30	+0.2
3,834,992	-		PFR28_03328	0.30	-0.6
3,834,992	-		PFR28_03328	0.30	+2.7
3,834,992	-		PFR28_03328	0.30	+2.4
3,835,030	+		PFR28_03328	0.34	-2.0
3,835,031	-		PFR28_03328	0.34	+0.4
3,835,031	-		PFR28_03328	0.34	-2.5
3,835,031	-		PFR28_03328	0.34	-0.7
3,835,031	-		PFR28_03328	0.34	+0.7
3,835,082	-		PFR28_03328	0.39	+1.5
3,835,338	-		PFR28_03328	0.62	+0.1
3,835,480	+		PFR28_03328	0.75	-2.5
3,835,480	+		PFR28_03328	0.75	-2.0
3,835,481	-		PFR28_03328	0.75	+1.5
3,835,672	+				+1.8
3,835,672	+				-1.2
3,835,672	+				+0.2
3,835,672	+				+0.1
3,835,672	+				+2.0
3,835,673	-				+1.9
3,835,673	-				-0.2
3,835,803	+				-2.2
3,835,804	-				-3.2
3,835,804	-				+0.1
3,835,810	-				+1.1
3,835,857	+				-0.5
3,835,857	+				+1.9
3,835,857	+				+2.5
3,835,857	+				-0.6
3,835,858	-				+0.2
3,835,876	+				+1.8
3,835,876	+				+2.9
3,835,975	+				-2.5
3,836,298	-		PFR28_03329	0.34	-0.3
3,836,458	+		PFR28_03329	0.48	-3.2
3,836,509	+		PFR28_03329	0.52	-0.5
3,836,509	+		PFR28_03329	0.52	-2.9
3,836,510	-		PFR28_03329	0.52	-1.0
3,836,510	-		PFR28_03329	0.52	+1.2
3,836,521	+		PFR28_03329	0.53	-0.2
3,836,521	+		PFR28_03329	0.53	-0.8
3,836,521	+		PFR28_03329	0.53	-1.9
3,836,521	+		PFR28_03329	0.53	-3.2
3,836,521	+		PFR28_03329	0.53	+1.3
3,836,521	+		PFR28_03329	0.53	+0.4
3,836,522	-		PFR28_03329	0.53	+1.8
3,836,522	-		PFR28_03329	0.53	-2.1
3,836,522	-		PFR28_03329	0.53	-0.1
3,836,522	-		PFR28_03329	0.53	-1.4
3,836,522	-		PFR28_03329	0.53	+0.8
3,836,522	-		PFR28_03329	0.53	+0.9
3,836,522	-		PFR28_03329	0.53	+1.8
3,836,522	-		PFR28_03329	0.53	-1.8
3,836,522	-		PFR28_03329	0.53	+2.7
3,836,657	+		PFR28_03329	0.65	+2.3
3,836,658	-		PFR28_03329	0.65	+2.1
3,836,658	-		PFR28_03329	0.65	+2.7
3,836,658	-		PFR28_03329	0.65	-0.6
3,836,658	-		PFR28_03329	0.65	+2.6
3,836,779	+		PFR28_03329	0.76	+0.3
3,836,779	+		PFR28_03329	0.76	-1.7
3,836,779	+		PFR28_03329	0.76	-3.5
3,836,779	+		PFR28_03329	0.76	-2.7
3,836,779	+		PFR28_03329	0.76	+1.8
3,836,779	+		PFR28_03329	0.76	-1.2
3,836,779	+		PFR28_03329	0.76	+0.4
3,836,779	+		PFR28_03329	0.76	+1.6
3,836,779	+		PFR28_03329	0.76	-0.0
3,836,780	-		PFR28_03329	0.76	-1.5
3,836,780	-		PFR28_03329	0.76	-0.7
3,836,780	-		PFR28_03329	0.76	-1.7
3,836,780	-		PFR28_03329	0.76	-1.3
3,836,789	-		PFR28_03329	0.77	+0.3
3,836,789	-		PFR28_03329	0.77	-1.4
3,836,789	-		PFR28_03329	0.77	-3.2
3,836,789	-		PFR28_03329	0.77	-0.2
3,836,803	+		PFR28_03329	0.78	-2.7
3,836,803	+		PFR28_03329	0.78	-1.5
3,836,803	+		PFR28_03329	0.78	-3.6
3,836,804	-		PFR28_03329	0.78	+1.7
3,836,804	-		PFR28_03329	0.78	+0.7
3,836,804	-		PFR28_03329	0.78	-0.7
3,836,804	-		PFR28_03329	0.78	-1.3
3,836,804	-		PFR28_03329	0.78	+1.2
3,837,079	+				+1.5
3,837,254	+				-3.1
3,837,254	+				-0.8
3,837,254	+				-0.1
3,837,254	+				+0.5
3,837,254	+				+0.2
3,837,254	+				+0.1
3,837,254	+				-1.2
3,837,254	+				+0.1
3,837,255	-				-3.4
3,837,255	-				-0.9
3,837,255	-				-2.7
3,837,255	-				-1.0
3,837,255	-				-1.9
3,837,255	-				-3.3
3,837,255	-				+2.4
3,837,256	+				+0.8
3,837,257	-				+0.2
3,837,257	-				+1.4
3,837,257	-				+0.2
3,837,305	+				+1.6
3,837,305	+				-0.7
3,837,305	+				-0.7
3,837,305	+				-2.2
3,837,305	+				-0.5
3,837,305	+				-2.0
3,837,305	+				-3.6
3,837,306	-				+0.8
3,837,306	-				-3.9
3,837,306	-				-0.6
3,837,306	-				-1.8
3,837,306	-				+1.0
3,837,306	-				+2.6
3,837,306	-				+0.7
3,837,350	+				+0.5
3,837,350	+				-2.9
3,837,351	-				+1.5
3,837,351	-				+1.9
3,837,351	-				+1.1
3,837,488	+		PFR28_03330	0.14	+0.6
3,837,488	+		PFR28_03330	0.14	-0.8
3,837,488	+		PFR28_03330	0.14	+1.5
3,837,488	+		PFR28_03330	0.14	-1.7
3,837,488	+		PFR28_03330	0.14	+0.1
3,837,489	-		PFR28_03330	0.14	+0.9
3,837,489	-		PFR28_03330	0.14	+0.6
3,837,489	-		PFR28_03330	0.14	-3.0
3,837,489	-		PFR28_03330	0.14	+1.4
3,837,489	-		PFR28_03330	0.14	+2.4
3,837,489	-		PFR28_03330	0.14	-2.0
3,837,489	-		PFR28_03330	0.14	-0.4
3,837,489	-		PFR28_03330	0.14	+1.8
3,837,501	-		PFR28_03330	0.14	+2.5
3,837,536	+		PFR28_03330	0.15	-1.1
3,837,536	+		PFR28_03330	0.15	+2.8
3,837,537	-		PFR28_03330	0.15	-2.0
3,837,698	+		PFR28_03330	0.21	-1.0
3,837,698	+		PFR28_03330	0.21	-0.7
3,837,698	+		PFR28_03330	0.21	+1.5
3,837,698	+		PFR28_03330	0.21	-4.0
3,837,698	+		PFR28_03330	0.21	-5.0
3,837,699	-		PFR28_03330	0.21	-1.8
3,837,699	-		PFR28_03330	0.21	+1.7
3,837,699	-		PFR28_03330	0.21	-0.3
3,837,699	-		PFR28_03330	0.21	-0.5
3,837,737	+		PFR28_03330	0.22	+0.5
3,837,737	+		PFR28_03330	0.22	+2.2
3,837,737	+		PFR28_03330	0.22	+0.4
3,837,738	-		PFR28_03330	0.22	+1.8
3,837,872	+		PFR28_03330	0.26	-0.5
3,837,873	-		PFR28_03330	0.26	-2.7
3,837,873	-		PFR28_03330	0.26	-0.3
3,837,873	-		PFR28_03330	0.26	-3.3
3,837,911	+		PFR28_03330	0.28	-0.3
3,837,912	-		PFR28_03330	0.28	+0.6
3,837,966	+		PFR28_03330	0.30	+1.1