Strain Fitness in Pseudomonas sp. RS175 around PFR28_03291

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 2.5 mM
3,801,042	+		PFR28_03289	0.88	-3.0
3,801,043	-		PFR28_03289	0.88	-1.7
3,801,043	-		PFR28_03289	0.88	-3.2
3,801,195	+				-5.1
3,801,195	+				-4.9
3,801,195	+				-1.9
3,801,195	+				-3.5
3,801,195	+				-2.8
3,801,195	+				-5.7
3,801,196	-				-3.2
3,801,196	-				-4.1
3,801,196	-				-1.7
3,801,196	-				-2.1
3,801,196	-				-1.9
3,801,196	-				-0.6
3,801,207	+				-2.6
3,801,207	+				-4.0
3,801,207	+				-1.9
3,801,207	+				-3.2
3,801,207	+				-4.7
3,801,207	+				-1.3
3,801,207	+				-1.5
3,801,207	+				-2.4
3,801,207	+				-3.2
3,801,208	-				-1.4
3,801,208	-				-2.5
3,801,208	-				-3.7
3,801,208	-				-2.9
3,801,208	-				-1.4
3,801,208	-				-3.3
3,801,208	-				-2.8
3,801,208	-				-1.9
3,801,208	-				-3.6
3,801,208	-				-0.2
3,801,229	+				-0.2
3,801,229	+				-0.4
3,801,239	+				-2.3
3,801,285	-				-2.1
3,801,285	-				-1.5
3,801,298	+				-5.6
3,801,298	+				-3.1
3,801,298	+				-1.0
3,801,298	+				-0.7
3,801,298	+				-3.4
3,801,298	+				-5.3
3,801,298	+				-1.7
3,801,299	-				+1.8
3,801,299	-				-0.6
3,801,299	-				-4.1
3,801,299	-				-3.8
3,801,299	-				-1.9
3,801,299	-				-0.1
3,801,299	-				+1.6
3,801,299	-				-2.8
3,801,299	-				-2.8
3,801,310	+				-1.5
3,801,310	+				-3.6
3,801,310	+				-1.5
3,801,310	+				-2.0
3,801,323	+				+0.3
3,801,323	+				-2.6
3,801,323	+				-0.8
3,801,324	-				-1.2
3,801,339	+				-3.8
3,801,339	+				+0.3
3,801,340	-				+0.2
3,801,340	-				+0.0
3,801,360	+				-2.9
3,801,360	+				-3.0
3,801,360	+				-3.7
3,801,361	-				+0.1
3,801,361	-				-3.6
3,801,361	-				+1.6
3,801,361	-				-2.6
3,801,363	+				-0.5
3,801,363	+				-0.5
3,801,364	-				+0.4
3,801,499	+				+0.6
3,801,500	-				-3.6
3,801,524	+				-2.7
3,801,562	+				-0.7
3,801,563	-				+1.8
3,801,563	-				-4.1
3,801,563	-				+3.4
3,801,715	+				+1.5
3,801,715	+				-3.4
3,801,716	-				-1.4
3,801,716	-				-1.4
3,801,716	-				-0.2
3,801,716	-				+1.2
3,801,807	+		PFR28_03290	0.39	+1.8
3,801,807	+		PFR28_03290	0.39	+0.5
3,801,807	+		PFR28_03290	0.39	+1.5
3,801,807	+		PFR28_03290	0.39	-3.1
3,801,807	+		PFR28_03290	0.39	-1.0
3,801,807	+		PFR28_03290	0.39	-3.0
3,801,807	+		PFR28_03290	0.39	+1.1
3,801,807	+		PFR28_03290	0.39	-2.4
3,801,807	+		PFR28_03290	0.39	+1.6
3,801,807	+		PFR28_03290	0.39	+1.4
3,801,807	+		PFR28_03290	0.39	-0.2
3,801,808	-		PFR28_03290	0.39	+0.4
3,801,808	-		PFR28_03290	0.39	+1.3
3,801,808	-		PFR28_03290	0.39	+0.3
3,801,808	-		PFR28_03290	0.39	-0.7
3,801,808	-		PFR28_03290	0.39	+0.1
3,801,808	-		PFR28_03290	0.39	-0.0
3,801,808	-		PFR28_03290	0.39	-2.9
3,801,808	-		PFR28_03290	0.39	-0.4
3,801,808	-		PFR28_03290	0.39	-0.7
3,801,813	+		PFR28_03290	0.41	-2.4
3,801,813	+		PFR28_03290	0.41	+3.6
3,801,813	+		PFR28_03290	0.41	-0.2
3,801,813	+		PFR28_03290	0.41	+0.2
3,801,813	+		PFR28_03290	0.41	-0.1
3,801,813	+		PFR28_03290	0.41	-1.7
3,801,813	+		PFR28_03290	0.41	-0.0
3,801,813	+		PFR28_03290	0.41	+0.9
3,801,813	+		PFR28_03290	0.41	+2.4
3,801,813	+		PFR28_03290	0.41	-2.4
3,801,814	-		PFR28_03290	0.41	-1.7
3,801,814	-		PFR28_03290	0.41	-2.4
3,801,814	-		PFR28_03290	0.41	+2.9
3,801,814	-		PFR28_03290	0.41	-2.8
3,801,814	-		PFR28_03290	0.41	-2.7
3,801,846	+		PFR28_03290	0.53	-2.2
3,801,846	+		PFR28_03290	0.53	-1.1
3,801,846	+		PFR28_03290	0.53	-0.8
3,801,846	+		PFR28_03290	0.53	+0.8
3,801,846	+		PFR28_03290	0.53	-2.0
3,801,846	+		PFR28_03290	0.53	+1.2
3,801,846	+		PFR28_03290	0.53	-3.5
3,801,846	+		PFR28_03290	0.53	+0.9
3,801,846	+		PFR28_03290	0.53	+0.6
3,801,846	+		PFR28_03290	0.53	+2.6
3,801,846	+		PFR28_03290	0.53	-1.2
3,801,846	+		PFR28_03290	0.53	-0.9
3,801,847	-		PFR28_03290	0.54	+2.4
3,801,847	-		PFR28_03290	0.54	+1.8
3,801,847	-		PFR28_03290	0.54	-3.7
3,801,847	-		PFR28_03290	0.54	+0.8
3,801,847	-		PFR28_03290	0.54	-2.7
3,801,847	-		PFR28_03290	0.54	-0.8
3,801,847	-		PFR28_03290	0.54	-3.6
3,801,897	+		PFR28_03290	0.73	-0.0
3,801,897	+		PFR28_03290	0.73	-1.5
3,801,897	+		PFR28_03290	0.73	+1.4
3,801,897	+		PFR28_03290	0.73	-2.4
3,801,898	-		PFR28_03290	0.73	+0.4
3,801,898	-		PFR28_03290	0.73	-0.5
3,801,933	+		PFR28_03290	0.86	+1.8
3,801,933	+		PFR28_03290	0.86	+1.2
3,801,934	-		PFR28_03290	0.87	-1.0
3,802,105	+		PFR28_03291	0.49	-1.2
3,802,105	+		PFR28_03291	0.49	-2.0
3,802,105	+		PFR28_03291	0.49	-3.4
3,802,105	+		PFR28_03291	0.49	-3.0
3,802,105	+		PFR28_03291	0.49	+0.9
3,802,106	-		PFR28_03291	0.49	+0.5
3,802,221	-				+0.9
3,802,221	-				+0.4
3,802,221	-				+0.2
3,802,221	-				+0.6
3,802,301	+				+1.5
3,802,403	+				-0.2
3,802,403	+				+2.3
3,802,404	-				+0.3
3,802,404	-				+1.5
3,802,404	-				-0.2
3,802,404	-				-2.0
3,802,404	-				+1.1
3,802,425	+				+0.8
3,802,471	+				+2.2
3,802,487	+				+1.2
3,802,487	+				-1.0
3,802,487	+				-0.2
3,802,489	+				-0.5
3,802,489	+				+1.5
3,802,489	+				-3.3
3,802,489	+				-1.8
3,802,489	+				-0.6
3,802,489	+				-0.5
3,802,489	+				+1.4
3,802,500	+				-3.3
3,802,515	+				+1.1
3,802,602	+				+0.8