Strain Fitness in Pseudomonas sp. RS175 around PFR28_00893

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00892 and PFR28_00893 are separated by 3 nucleotidesPFR28_00893 and PFR28_00894 overlap by 8 nucleotides PFR28_00892: PFR28_00892 - hypothetical protein, at 964,107 to 965,048 _00892 PFR28_00893: PFR28_00893 - hypothetical protein, at 965,052 to 965,687 _00893 PFR28_00894: PFR28_00894 - Multidrug resistance ABC transporter ATP-binding/permease protein BmrA, at 965,680 to 967,497 _00894 Position (kb) 965 966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 964.079 kb on - strandat 964.102 kb on + strandat 964.102 kb on + strandat 964.103 kb on - strandat 964.103 kb on - strandat 964.103 kb on - strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.161 kb on + strandat 964.162 kb on - strandat 964.341 kb on + strand, within PFR28_00892at 964.341 kb on + strand, within PFR28_00892at 964.363 kb on - strand, within PFR28_00892at 964.363 kb on - strand, within PFR28_00892at 964.417 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.587 kb on + strand, within PFR28_00892at 964.587 kb on + strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.731 kb on + strand, within PFR28_00892at 964.731 kb on + strand, within PFR28_00892at 964.731 kb on + strand, within PFR28_00892at 964.732 kb on - strand, within PFR28_00892at 964.830 kb on + strand, within PFR28_00892at 964.830 kb on + strand, within PFR28_00892at 964.831 kb on - strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 965.016 kb on + strandat 965.022 kb on + strandat 965.022 kb on + strandat 965.022 kb on + strandat 965.022 kb on + strandat 965.022 kb on + strandat 965.022 kb on + strandat 965.022 kb on + strandat 965.023 kb on - strandat 965.023 kb on - strandat 965.023 kb on - strandat 965.023 kb on - strandat 965.023 kb on - strandat 965.023 kb on - strandat 965.023 kb on - strandat 965.070 kb on + strandat 965.070 kb on + strandat 965.070 kb on + strandat 965.070 kb on + strandat 965.070 kb on + strandat 965.071 kb on - strandat 965.071 kb on - strandat 965.071 kb on - strandat 965.071 kb on - strandat 965.071 kb on - strandat 965.071 kb on - strandat 965.071 kb on - strandat 965.071 kb on - strandat 965.132 kb on - strand, within PFR28_00893at 965.226 kb on + strand, within PFR28_00893at 965.310 kb on + strand, within PFR28_00893at 965.310 kb on + strand, within PFR28_00893at 965.311 kb on - strand, within PFR28_00893at 965.311 kb on - strand, within PFR28_00893at 965.406 kb on + strand, within PFR28_00893at 965.407 kb on - strand, within PFR28_00893at 965.407 kb on - strand, within PFR28_00893at 965.622 kb on + strand, within PFR28_00893at 965.802 kb on - strandat 965.894 kb on + strand, within PFR28_00894at 965.895 kb on - strand, within PFR28_00894at 965.895 kb on - strand, within PFR28_00894at 965.895 kb on - strand, within PFR28_00894at 965.895 kb on - strand, within PFR28_00894at 965.938 kb on + strand, within PFR28_00894at 965.938 kb on + strand, within PFR28_00894at 965.939 kb on - strand, within PFR28_00894at 965.939 kb on - strand, within PFR28_00894at 965.941 kb on - strand, within PFR28_00894at 965.999 kb on + strand, within PFR28_00894at 965.999 kb on + strand, within PFR28_00894at 965.999 kb on + strand, within PFR28_00894at 965.999 kb on + strand, within PFR28_00894at 965.999 kb on + strand, within PFR28_00894at 966.000 kb on - strand, within PFR28_00894at 966.000 kb on - strand, within PFR28_00894at 966.000 kb on - strand, within PFR28_00894at 966.000 kb on - strand, within PFR28_00894at 966.043 kb on + strand, within PFR28_00894at 966.098 kb on - strand, within PFR28_00894at 966.151 kb on - strand, within PFR28_00894at 966.289 kb on + strand, within PFR28_00894at 966.289 kb on + strand, within PFR28_00894at 966.289 kb on + strand, within PFR28_00894at 966.289 kb on + strand, within PFR28_00894at 966.290 kb on - strand, within PFR28_00894at 966.290 kb on - strand, within PFR28_00894at 966.470 kb on - strand, within PFR28_00894at 966.543 kb on + strand, within PFR28_00894at 966.572 kb on + strand, within PFR28_00894at 966.572 kb on + strand, within PFR28_00894at 966.573 kb on - strand, within PFR28_00894at 966.573 kb on - strand, within PFR28_00894at 966.619 kb on + strand, within PFR28_00894at 966.619 kb on + strand, within PFR28_00894at 966.619 kb on + strand, within PFR28_00894at 966.620 kb on - strand, within PFR28_00894at 966.667 kb on + strand, within PFR28_00894at 966.667 kb on + strand, within PFR28_00894at 966.667 kb on + strand, within PFR28_00894at 966.667 kb on + strand, within PFR28_00894at 966.668 kb on - strand, within PFR28_00894at 966.673 kb on + strand, within PFR28_00894at 966.673 kb on + strand, within PFR28_00894at 966.673 kb on + strand, within PFR28_00894at 966.674 kb on - strand, within PFR28_00894at 966.674 kb on - strand, within PFR28_00894at 966.674 kb on - strand, within PFR28_00894at 966.674 kb on - strand, within PFR28_00894at 966.674 kb on - strand, within PFR28_00894at 966.674 kb on - strand, within PFR28_00894at 966.676 kb on + strand, within PFR28_00894at 966.676 kb on + strand, within PFR28_00894at 966.676 kb on + strand, within PFR28_00894at 966.676 kb on + strand, within PFR28_00894at 966.676 kb on + strand, within PFR28_00894at 966.677 kb on - strand, within PFR28_00894at 966.677 kb on - strand, within PFR28_00894at 966.677 kb on - strand, within PFR28_00894at 966.677 kb on - strand, within PFR28_00894

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 2.5 mM
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964,079 - -2.8
964,102 + -0.4
964,102 + +3.3
964,103 - +0.6
964,103 - +0.5
964,103 - -0.9
964,137 + -1.6
964,137 + +0.1
964,137 + +1.0
964,137 + -2.9
964,137 + +2.3
964,138 - +0.8
964,138 - +0.3
964,138 - -1.6
964,138 - -2.5
964,138 - +1.4
964,138 - +1.4
964,161 + +2.3
964,162 - -2.5
964,341 + PFR28_00892 0.25 -0.3
964,341 + PFR28_00892 0.25 -3.4
964,363 - PFR28_00892 0.27 +0.7
964,363 - PFR28_00892 0.27 -2.7
964,417 + PFR28_00892 0.33 -1.6
964,443 + PFR28_00892 0.36 -1.2
964,443 + PFR28_00892 0.36 -0.9
964,443 + PFR28_00892 0.36 -3.9
964,443 + PFR28_00892 0.36 -3.5
964,443 + PFR28_00892 0.36 +1.0
964,443 + PFR28_00892 0.36 -1.9
964,443 + PFR28_00892 0.36 +1.6
964,443 + PFR28_00892 0.36 +3.3
964,443 + PFR28_00892 0.36 -1.5
964,443 + PFR28_00892 0.36 +0.7
964,444 - PFR28_00892 0.36 -0.0
964,444 - PFR28_00892 0.36 +0.6
964,444 - PFR28_00892 0.36 +0.0
964,444 - PFR28_00892 0.36 -0.6
964,444 - PFR28_00892 0.36 +0.7
964,444 - PFR28_00892 0.36 -3.0
964,444 - PFR28_00892 0.36 +3.5
964,444 - PFR28_00892 0.36 -1.1
964,444 - PFR28_00892 0.36 +2.1
964,444 - PFR28_00892 0.36 -1.6
964,587 + PFR28_00892 0.51 -3.2
964,587 + PFR28_00892 0.51 -2.6
964,588 - PFR28_00892 0.51 -0.1
964,588 - PFR28_00892 0.51 -2.6
964,588 - PFR28_00892 0.51 -3.5
964,674 + PFR28_00892 0.60 -2.2
964,674 + PFR28_00892 0.60 +1.9
964,674 + PFR28_00892 0.60 +2.6
964,674 + PFR28_00892 0.60 -1.6
964,675 - PFR28_00892 0.60 +1.0
964,675 - PFR28_00892 0.60 +1.5
964,675 - PFR28_00892 0.60 -2.7
964,675 - PFR28_00892 0.60 +0.7
964,675 - PFR28_00892 0.60 -2.4
964,675 - PFR28_00892 0.60 +0.5
964,675 - PFR28_00892 0.60 -1.9
964,731 + PFR28_00892 0.66 +1.7
964,731 + PFR28_00892 0.66 +1.6
964,731 + PFR28_00892 0.66 +0.5
964,732 - PFR28_00892 0.66 +1.4
964,830 + PFR28_00892 0.77 -1.2
964,830 + PFR28_00892 0.77 -3.1
964,831 - PFR28_00892 0.77 -1.5
964,890 + PFR28_00892 0.83 +2.6
964,890 + PFR28_00892 0.83 -1.1
964,890 + PFR28_00892 0.83 -0.9
964,890 + PFR28_00892 0.83 +1.7
964,890 + PFR28_00892 0.83 -2.2
964,890 + PFR28_00892 0.83 +0.8
964,890 + PFR28_00892 0.83 +0.7
964,891 - PFR28_00892 0.83 -1.7
964,891 - PFR28_00892 0.83 -2.9
964,891 - PFR28_00892 0.83 +0.8
964,891 - PFR28_00892 0.83 -0.9
964,891 - PFR28_00892 0.83 -0.9
964,891 - PFR28_00892 0.83 +1.4
964,891 - PFR28_00892 0.83 -1.0
964,891 - PFR28_00892 0.83 -0.6
964,891 - PFR28_00892 0.83 -3.9
964,891 - PFR28_00892 0.83 -2.1
965,016 + -2.5
965,022 + -0.3
965,022 + +0.7
965,022 + +2.5
965,022 + +0.2
965,022 + -0.3
965,022 + -1.9
965,022 + +1.4
965,023 - -3.9
965,023 - -0.9
965,023 - -2.8
965,023 - -0.5
965,023 - -2.6
965,023 - +2.5
965,023 - -0.6
965,070 + +1.5
965,070 + -1.4
965,070 + +1.6
965,070 + -2.5
965,070 + -0.1
965,071 - -2.2
965,071 - -3.4
965,071 - +0.7
965,071 - +3.9
965,071 - -0.5
965,071 - -0.5
965,071 - -0.4
965,071 - -0.1
965,132 - PFR28_00893 0.13 +0.2
965,226 + PFR28_00893 0.27 +1.3
965,310 + PFR28_00893 0.41 -0.8
965,310 + PFR28_00893 0.41 +3.5
965,311 - PFR28_00893 0.41 +0.2
965,311 - PFR28_00893 0.41 -1.6
965,406 + PFR28_00893 0.56 +0.1
965,407 - PFR28_00893 0.56 -0.6
965,407 - PFR28_00893 0.56 -1.9
965,622 + PFR28_00893 0.90 -0.4
965,802 - -2.2
965,894 + PFR28_00894 0.12 -0.1
965,895 - PFR28_00894 0.12 +0.3
965,895 - PFR28_00894 0.12 -1.3
965,895 - PFR28_00894 0.12 +3.4
965,895 - PFR28_00894 0.12 +0.9
965,938 + PFR28_00894 0.14 -2.1
965,938 + PFR28_00894 0.14 -2.2
965,939 - PFR28_00894 0.14 -2.1
965,939 - PFR28_00894 0.14 +0.8
965,941 - PFR28_00894 0.14 -0.6
965,999 + PFR28_00894 0.18 +1.2
965,999 + PFR28_00894 0.18 -0.9
965,999 + PFR28_00894 0.18 +2.5
965,999 + PFR28_00894 0.18 +1.0
965,999 + PFR28_00894 0.18 -3.2
966,000 - PFR28_00894 0.18 -2.5
966,000 - PFR28_00894 0.18 +0.2
966,000 - PFR28_00894 0.18 -1.0
966,000 - PFR28_00894 0.18 -0.3
966,043 + PFR28_00894 0.20 +0.4
966,098 - PFR28_00894 0.23 +0.5
966,151 - PFR28_00894 0.26 +0.7
966,289 + PFR28_00894 0.33 +0.9
966,289 + PFR28_00894 0.33 +1.3
966,289 + PFR28_00894 0.33 +1.2
966,289 + PFR28_00894 0.33 +1.4
966,290 - PFR28_00894 0.34 -0.5
966,290 - PFR28_00894 0.34 +1.7
966,470 - PFR28_00894 0.43 -1.3
966,543 + PFR28_00894 0.47 -1.1
966,572 + PFR28_00894 0.49 -2.2
966,572 + PFR28_00894 0.49 -2.6
966,573 - PFR28_00894 0.49 -0.6
966,573 - PFR28_00894 0.49 -2.0
966,619 + PFR28_00894 0.52 -2.3
966,619 + PFR28_00894 0.52 -3.0
966,619 + PFR28_00894 0.52 -0.3
966,620 - PFR28_00894 0.52 -0.6
966,667 + PFR28_00894 0.54 +0.9
966,667 + PFR28_00894 0.54 +1.6
966,667 + PFR28_00894 0.54 -3.3
966,667 + PFR28_00894 0.54 -2.1
966,668 - PFR28_00894 0.54 +2.0
966,673 + PFR28_00894 0.55 +0.7
966,673 + PFR28_00894 0.55 +0.8
966,673 + PFR28_00894 0.55 -3.1
966,674 - PFR28_00894 0.55 -3.1
966,674 - PFR28_00894 0.55 +0.1
966,674 - PFR28_00894 0.55 +2.1
966,674 - PFR28_00894 0.55 +0.1
966,674 - PFR28_00894 0.55 +0.8
966,674 - PFR28_00894 0.55 +0.7
966,676 + PFR28_00894 0.55 +0.0
966,676 + PFR28_00894 0.55 +0.3
966,676 + PFR28_00894 0.55 -3.4
966,676 + PFR28_00894 0.55 +3.0
966,676 + PFR28_00894 0.55 -2.7
966,677 - PFR28_00894 0.55 -3.1
966,677 - PFR28_00894 0.55 -1.6
966,677 - PFR28_00894 0.55 -0.3
966,677 - PFR28_00894 0.55 +2.2

Or see this region's nucleotide sequence