Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4105 and Echvi_4106 are separated by 112 nucleotides Echvi_4106 and Echvi_4107 are separated by 632 nucleotides Echvi_4107 and Echvi_4108 are separated by 18 nucleotides Echvi_4108 and Echvi_4109 overlap by 4 nucleotides
Echvi_4105: Echvi_4105 - DNA repair proteins, at 4,920,095 to 4,920,899
_4105
Echvi_4106: Echvi_4106 - hypothetical protein, at 4,921,012 to 4,921,176
_4106
Echvi_4107: Echvi_4107 - hypothetical protein, at 4,921,809 to 4,921,970
_4107
Echvi_4108: Echvi_4108 - Co/Zn/Cd efflux system component, at 4,921,989 to 4,922,780
_4108
Echvi_4109: Echvi_4109 - Fe2+/Zn2+ uptake regulation proteins, at 4,922,777 to 4,923,139
_4109
Position (kb)
4921
4922 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4920.847 kb on - strand at 4920.920 kb on + strand at 4920.931 kb on + strand at 4921.097 kb on - strand, within Echvi_4106 at 4921.172 kb on - strand at 4921.220 kb on + strand at 4921.224 kb on - strand at 4921.225 kb on + strand at 4921.257 kb on - strand at 4921.293 kb on + strand at 4921.293 kb on + strand at 4921.293 kb on + strand at 4921.294 kb on - strand at 4921.294 kb on - strand at 4921.309 kb on + strand at 4921.348 kb on + strand at 4921.381 kb on + strand at 4921.382 kb on - strand at 4921.382 kb on - strand at 4921.382 kb on - strand at 4921.382 kb on - strand at 4921.446 kb on - strand at 4921.460 kb on + strand at 4921.491 kb on + strand at 4921.551 kb on + strand at 4921.551 kb on + strand at 4921.566 kb on + strand at 4921.567 kb on + strand at 4921.573 kb on - strand at 4921.601 kb on + strand at 4921.606 kb on + strand at 4921.606 kb on + strand at 4921.607 kb on - strand at 4921.609 kb on + strand at 4921.609 kb on + strand at 4921.610 kb on - strand at 4921.652 kb on - strand at 4921.664 kb on - strand at 4921.677 kb on + strand at 4921.680 kb on + strand at 4921.680 kb on + strand at 4921.680 kb on + strand at 4921.680 kb on + strand at 4921.681 kb on - strand at 4921.681 kb on - strand at 4921.682 kb on + strand at 4921.683 kb on - strand at 4921.693 kb on + strand at 4921.701 kb on + strand at 4921.701 kb on + strand at 4921.702 kb on - strand at 4921.708 kb on - strand at 4921.710 kb on + strand at 4921.728 kb on - strand at 4921.757 kb on - strand at 4921.797 kb on - strand at 4921.887 kb on + strand, within Echvi_4107 at 4921.935 kb on + strand, within Echvi_4107 at 4921.935 kb on + strand, within Echvi_4107 at 4921.938 kb on + strand, within Echvi_4107 at 4921.938 kb on + strand, within Echvi_4107 at 4921.938 kb on + strand, within Echvi_4107 at 4921.941 kb on + strand, within Echvi_4107 at 4921.942 kb on - strand, within Echvi_4107 at 4921.942 kb on - strand, within Echvi_4107 at 4921.945 kb on - strand, within Echvi_4107 at 4921.973 kb on - strand at 4921.976 kb on + strand at 4921.983 kb on + strand at 4921.984 kb on - strand at 4922.005 kb on - strand at 4922.141 kb on + strand, within Echvi_4108 at 4922.142 kb on - strand, within Echvi_4108 at 4922.174 kb on + strand, within Echvi_4108 at 4922.289 kb on + strand, within Echvi_4108 at 4922.289 kb on + strand, within Echvi_4108 at 4922.289 kb on + strand, within Echvi_4108 at 4922.290 kb on - strand, within Echvi_4108 at 4922.293 kb on - strand, within Echvi_4108 at 4922.369 kb on + strand, within Echvi_4108 at 4922.401 kb on + strand, within Echvi_4108 at 4922.401 kb on + strand, within Echvi_4108 at 4922.523 kb on + strand, within Echvi_4108 at 4922.553 kb on + strand, within Echvi_4108 at 4922.554 kb on - strand, within Echvi_4108 at 4922.556 kb on - strand, within Echvi_4108 at 4922.618 kb on + strand, within Echvi_4108 at 4922.619 kb on - strand, within Echvi_4108 at 4922.619 kb on - strand, within Echvi_4108 at 4922.619 kb on - strand, within Echvi_4108 at 4922.622 kb on + strand, within Echvi_4108 at 4922.623 kb on - strand, within Echvi_4108 at 4922.632 kb on - strand, within Echvi_4108 at 4922.650 kb on - strand, within Echvi_4108 at 4922.828 kb on - strand, within Echvi_4109 at 4922.841 kb on - strand, within Echvi_4109 at 4922.846 kb on - strand, within Echvi_4109 at 4922.858 kb on + strand, within Echvi_4109 at 4922.858 kb on + strand, within Echvi_4109 at 4922.859 kb on - strand, within Echvi_4109 at 4922.905 kb on + strand, within Echvi_4109 at 4922.906 kb on - strand, within Echvi_4109 at 4922.909 kb on - strand, within Echvi_4109 at 4922.912 kb on + strand, within Echvi_4109 at 4922.912 kb on + strand, within Echvi_4109 at 4922.913 kb on - strand, within Echvi_4109 at 4922.913 kb on - strand, within Echvi_4109 at 4922.913 kb on - strand, within Echvi_4109 at 4922.913 kb on - strand, within Echvi_4109 at 4922.957 kb on + strand, within Echvi_4109 at 4922.957 kb on + strand, within Echvi_4109
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 4,920,847 - -0.7 4,920,920 + -3.8 4,920,931 + +1.8 4,921,097 - Echvi_4106 0.52 +0.5 4,921,172 - +2.7 4,921,220 + -0.9 4,921,224 - +0.3 4,921,225 + +0.8 4,921,257 - +0.6 4,921,293 + -1.8 4,921,293 + -0.1 4,921,293 + +1.2 4,921,294 - +1.2 4,921,294 - -3.0 4,921,309 + -2.6 4,921,348 + -0.6 4,921,381 + -0.6 4,921,382 - +0.5 4,921,382 - +0.2 4,921,382 - -0.7 4,921,382 - +1.6 4,921,446 - -0.1 4,921,460 + +1.5 4,921,491 + -0.6 4,921,551 + +1.2 4,921,551 + +0.9 4,921,566 + +0.8 4,921,567 + -0.3 4,921,573 - -0.4 4,921,601 + +2.6 4,921,606 + -0.2 4,921,606 + +0.3 4,921,607 - -0.9 4,921,609 + -2.5 4,921,609 + +0.1 4,921,610 - -1.7 4,921,652 - -1.7 4,921,664 - -1.5 4,921,677 + +0.5 4,921,680 + +4.1 4,921,680 + +0.4 4,921,680 + +2.0 4,921,680 + +1.8 4,921,681 - +0.3 4,921,681 - +0.2 4,921,682 + +0.7 4,921,683 - +0.6 4,921,693 + -0.1 4,921,701 + +1.2 4,921,701 + -0.4 4,921,702 - -0.0 4,921,708 - -2.3 4,921,710 + -1.2 4,921,728 - -0.5 4,921,757 - -1.7 4,921,797 - -1.6 4,921,887 + Echvi_4107 0.48 +1.5 4,921,935 + Echvi_4107 0.78 -0.2 4,921,935 + Echvi_4107 0.78 -1.1 4,921,938 + Echvi_4107 0.80 -1.9 4,921,938 + Echvi_4107 0.80 -0.6 4,921,938 + Echvi_4107 0.80 -2.0 4,921,941 + Echvi_4107 0.81 -0.1 4,921,942 - Echvi_4107 0.82 +0.1 4,921,942 - Echvi_4107 0.82 +0.3 4,921,945 - Echvi_4107 0.84 +0.1 4,921,973 - +0.5 4,921,976 + +0.5 4,921,983 + -0.5 4,921,984 - +0.2 4,922,005 - +1.1 4,922,141 + Echvi_4108 0.19 -0.6 4,922,142 - Echvi_4108 0.19 +0.1 4,922,174 + Echvi_4108 0.23 +0.3 4,922,289 + Echvi_4108 0.38 +2.2 4,922,289 + Echvi_4108 0.38 +1.0 4,922,289 + Echvi_4108 0.38 +0.5 4,922,290 - Echvi_4108 0.38 +1.7 4,922,293 - Echvi_4108 0.38 -0.5 4,922,369 + Echvi_4108 0.48 +1.6 4,922,401 + Echvi_4108 0.52 -2.0 4,922,401 + Echvi_4108 0.52 -0.5 4,922,523 + Echvi_4108 0.67 +1.4 4,922,553 + Echvi_4108 0.71 -2.6 4,922,554 - Echvi_4108 0.71 -0.8 4,922,556 - Echvi_4108 0.72 +2.6 4,922,618 + Echvi_4108 0.79 -2.6 4,922,619 - Echvi_4108 0.80 +0.6 4,922,619 - Echvi_4108 0.80 -0.0 4,922,619 - Echvi_4108 0.80 +0.4 4,922,622 + Echvi_4108 0.80 -0.0 4,922,623 - Echvi_4108 0.80 +1.2 4,922,632 - Echvi_4108 0.81 +0.9 4,922,650 - Echvi_4108 0.83 +1.0 4,922,828 - Echvi_4109 0.14 -1.2 4,922,841 - Echvi_4109 0.18 +0.0 4,922,846 - Echvi_4109 0.19 -0.2 4,922,858 + Echvi_4109 0.22 +0.1 4,922,858 + Echvi_4109 0.22 -0.0 4,922,859 - Echvi_4109 0.23 +1.3 4,922,905 + Echvi_4109 0.35 +1.0 4,922,906 - Echvi_4109 0.36 +1.0 4,922,909 - Echvi_4109 0.36 -0.1 4,922,912 + Echvi_4109 0.37 -0.0 4,922,912 + Echvi_4109 0.37 -0.3 4,922,913 - Echvi_4109 0.37 -0.6 4,922,913 - Echvi_4109 0.37 -2.3 4,922,913 - Echvi_4109 0.37 +0.4 4,922,913 - Echvi_4109 0.37 -0.3 4,922,957 + Echvi_4109 0.50 -0.5 4,922,957 + Echvi_4109 0.50 +0.9
Or see this region's nucleotide sequence