Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4107

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4105 and Echvi_4106 are separated by 112 nucleotidesEchvi_4106 and Echvi_4107 are separated by 632 nucleotidesEchvi_4107 and Echvi_4108 are separated by 18 nucleotidesEchvi_4108 and Echvi_4109 overlap by 4 nucleotides Echvi_4105: Echvi_4105 - DNA repair proteins, at 4,920,095 to 4,920,899 _4105 Echvi_4106: Echvi_4106 - hypothetical protein, at 4,921,012 to 4,921,176 _4106 Echvi_4107: Echvi_4107 - hypothetical protein, at 4,921,809 to 4,921,970 _4107 Echvi_4108: Echvi_4108 - Co/Zn/Cd efflux system component, at 4,921,989 to 4,922,780 _4108 Echvi_4109: Echvi_4109 - Fe2+/Zn2+ uptake regulation proteins, at 4,922,777 to 4,923,139 _4109 Position (kb) 4921 4922Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4920.847 kb on - strandat 4920.920 kb on + strandat 4920.931 kb on + strandat 4921.097 kb on - strand, within Echvi_4106at 4921.172 kb on - strandat 4921.220 kb on + strandat 4921.224 kb on - strandat 4921.225 kb on + strandat 4921.257 kb on - strandat 4921.293 kb on + strandat 4921.293 kb on + strandat 4921.293 kb on + strandat 4921.294 kb on - strandat 4921.294 kb on - strandat 4921.309 kb on + strandat 4921.348 kb on + strandat 4921.381 kb on + strandat 4921.382 kb on - strandat 4921.382 kb on - strandat 4921.382 kb on - strandat 4921.382 kb on - strandat 4921.446 kb on - strandat 4921.460 kb on + strandat 4921.491 kb on + strandat 4921.551 kb on + strandat 4921.551 kb on + strandat 4921.566 kb on + strandat 4921.567 kb on + strandat 4921.573 kb on - strandat 4921.601 kb on + strandat 4921.606 kb on + strandat 4921.606 kb on + strandat 4921.607 kb on - strandat 4921.609 kb on + strandat 4921.609 kb on + strandat 4921.610 kb on - strandat 4921.652 kb on - strandat 4921.664 kb on - strandat 4921.677 kb on + strandat 4921.680 kb on + strandat 4921.680 kb on + strandat 4921.680 kb on + strandat 4921.680 kb on + strandat 4921.681 kb on - strandat 4921.681 kb on - strandat 4921.682 kb on + strandat 4921.683 kb on - strandat 4921.693 kb on + strandat 4921.701 kb on + strandat 4921.701 kb on + strandat 4921.702 kb on - strandat 4921.708 kb on - strandat 4921.710 kb on + strandat 4921.728 kb on - strandat 4921.757 kb on - strandat 4921.797 kb on - strandat 4921.887 kb on + strand, within Echvi_4107at 4921.935 kb on + strand, within Echvi_4107at 4921.935 kb on + strand, within Echvi_4107at 4921.938 kb on + strand, within Echvi_4107at 4921.938 kb on + strand, within Echvi_4107at 4921.938 kb on + strand, within Echvi_4107at 4921.941 kb on + strand, within Echvi_4107at 4921.942 kb on - strand, within Echvi_4107at 4921.942 kb on - strand, within Echvi_4107at 4921.945 kb on - strand, within Echvi_4107at 4921.973 kb on - strandat 4921.976 kb on + strandat 4921.983 kb on + strandat 4921.984 kb on - strandat 4922.005 kb on - strandat 4922.141 kb on + strand, within Echvi_4108at 4922.142 kb on - strand, within Echvi_4108at 4922.174 kb on + strand, within Echvi_4108at 4922.289 kb on + strand, within Echvi_4108at 4922.289 kb on + strand, within Echvi_4108at 4922.289 kb on + strand, within Echvi_4108at 4922.290 kb on - strand, within Echvi_4108at 4922.293 kb on - strand, within Echvi_4108at 4922.369 kb on + strand, within Echvi_4108at 4922.401 kb on + strand, within Echvi_4108at 4922.401 kb on + strand, within Echvi_4108at 4922.523 kb on + strand, within Echvi_4108at 4922.553 kb on + strand, within Echvi_4108at 4922.554 kb on - strand, within Echvi_4108at 4922.556 kb on - strand, within Echvi_4108at 4922.618 kb on + strand, within Echvi_4108at 4922.619 kb on - strand, within Echvi_4108at 4922.619 kb on - strand, within Echvi_4108at 4922.619 kb on - strand, within Echvi_4108at 4922.622 kb on + strand, within Echvi_4108at 4922.623 kb on - strand, within Echvi_4108at 4922.632 kb on - strand, within Echvi_4108at 4922.650 kb on - strand, within Echvi_4108at 4922.828 kb on - strand, within Echvi_4109at 4922.841 kb on - strand, within Echvi_4109at 4922.846 kb on - strand, within Echvi_4109at 4922.858 kb on + strand, within Echvi_4109at 4922.858 kb on + strand, within Echvi_4109at 4922.859 kb on - strand, within Echvi_4109at 4922.905 kb on + strand, within Echvi_4109at 4922.906 kb on - strand, within Echvi_4109at 4922.909 kb on - strand, within Echvi_4109at 4922.912 kb on + strand, within Echvi_4109at 4922.912 kb on + strand, within Echvi_4109at 4922.913 kb on - strand, within Echvi_4109at 4922.913 kb on - strand, within Echvi_4109at 4922.913 kb on - strand, within Echvi_4109at 4922.913 kb on - strand, within Echvi_4109at 4922.957 kb on + strand, within Echvi_4109at 4922.957 kb on + strand, within Echvi_4109

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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4,920,847 - -0.7
4,920,920 + -3.8
4,920,931 + +1.8
4,921,097 - Echvi_4106 0.52 +0.5
4,921,172 - +2.7
4,921,220 + -0.9
4,921,224 - +0.3
4,921,225 + +0.8
4,921,257 - +0.6
4,921,293 + -1.8
4,921,293 + -0.1
4,921,293 + +1.2
4,921,294 - +1.2
4,921,294 - -3.0
4,921,309 + -2.6
4,921,348 + -0.6
4,921,381 + -0.6
4,921,382 - +0.5
4,921,382 - +0.2
4,921,382 - -0.7
4,921,382 - +1.6
4,921,446 - -0.1
4,921,460 + +1.5
4,921,491 + -0.6
4,921,551 + +1.2
4,921,551 + +0.9
4,921,566 + +0.8
4,921,567 + -0.3
4,921,573 - -0.4
4,921,601 + +2.6
4,921,606 + -0.2
4,921,606 + +0.3
4,921,607 - -0.9
4,921,609 + -2.5
4,921,609 + +0.1
4,921,610 - -1.7
4,921,652 - -1.7
4,921,664 - -1.5
4,921,677 + +0.5
4,921,680 + +4.1
4,921,680 + +0.4
4,921,680 + +2.0
4,921,680 + +1.8
4,921,681 - +0.3
4,921,681 - +0.2
4,921,682 + +0.7
4,921,683 - +0.6
4,921,693 + -0.1
4,921,701 + +1.2
4,921,701 + -0.4
4,921,702 - -0.0
4,921,708 - -2.3
4,921,710 + -1.2
4,921,728 - -0.5
4,921,757 - -1.7
4,921,797 - -1.6
4,921,887 + Echvi_4107 0.48 +1.5
4,921,935 + Echvi_4107 0.78 -0.2
4,921,935 + Echvi_4107 0.78 -1.1
4,921,938 + Echvi_4107 0.80 -1.9
4,921,938 + Echvi_4107 0.80 -0.6
4,921,938 + Echvi_4107 0.80 -2.0
4,921,941 + Echvi_4107 0.81 -0.1
4,921,942 - Echvi_4107 0.82 +0.1
4,921,942 - Echvi_4107 0.82 +0.3
4,921,945 - Echvi_4107 0.84 +0.1
4,921,973 - +0.5
4,921,976 + +0.5
4,921,983 + -0.5
4,921,984 - +0.2
4,922,005 - +1.1
4,922,141 + Echvi_4108 0.19 -0.6
4,922,142 - Echvi_4108 0.19 +0.1
4,922,174 + Echvi_4108 0.23 +0.3
4,922,289 + Echvi_4108 0.38 +2.2
4,922,289 + Echvi_4108 0.38 +1.0
4,922,289 + Echvi_4108 0.38 +0.5
4,922,290 - Echvi_4108 0.38 +1.7
4,922,293 - Echvi_4108 0.38 -0.5
4,922,369 + Echvi_4108 0.48 +1.6
4,922,401 + Echvi_4108 0.52 -2.0
4,922,401 + Echvi_4108 0.52 -0.5
4,922,523 + Echvi_4108 0.67 +1.4
4,922,553 + Echvi_4108 0.71 -2.6
4,922,554 - Echvi_4108 0.71 -0.8
4,922,556 - Echvi_4108 0.72 +2.6
4,922,618 + Echvi_4108 0.79 -2.6
4,922,619 - Echvi_4108 0.80 +0.6
4,922,619 - Echvi_4108 0.80 -0.0
4,922,619 - Echvi_4108 0.80 +0.4
4,922,622 + Echvi_4108 0.80 -0.0
4,922,623 - Echvi_4108 0.80 +1.2
4,922,632 - Echvi_4108 0.81 +0.9
4,922,650 - Echvi_4108 0.83 +1.0
4,922,828 - Echvi_4109 0.14 -1.2
4,922,841 - Echvi_4109 0.18 +0.0
4,922,846 - Echvi_4109 0.19 -0.2
4,922,858 + Echvi_4109 0.22 +0.1
4,922,858 + Echvi_4109 0.22 -0.0
4,922,859 - Echvi_4109 0.23 +1.3
4,922,905 + Echvi_4109 0.35 +1.0
4,922,906 - Echvi_4109 0.36 +1.0
4,922,909 - Echvi_4109 0.36 -0.1
4,922,912 + Echvi_4109 0.37 -0.0
4,922,912 + Echvi_4109 0.37 -0.3
4,922,913 - Echvi_4109 0.37 -0.6
4,922,913 - Echvi_4109 0.37 -2.3
4,922,913 - Echvi_4109 0.37 +0.4
4,922,913 - Echvi_4109 0.37 -0.3
4,922,957 + Echvi_4109 0.50 -0.5
4,922,957 + Echvi_4109 0.50 +0.9

Or see this region's nucleotide sequence