Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2925 and Echvi_2926 are separated by 99 nucleotides Echvi_2926 and Echvi_2927 are separated by 69 nucleotides Echvi_2927 and Echvi_2928 are separated by 10 nucleotides
Echvi_2925: Echvi_2925 - hypothetical protein, at 3,502,899 to 3,503,825
_2925
Echvi_2926: Echvi_2926 - Transketolase, C-terminal subunit, at 3,503,925 to 3,504,893
_2926
Echvi_2927: Echvi_2927 - Transketolase, N-terminal subunit, at 3,504,963 to 3,505,814
_2927
Echvi_2928: Echvi_2928 - Peroxiredoxin, at 3,505,825 to 3,506,274
_2928
Position (kb)
3503
3504
3505 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3502.927 kb on + strand at 3502.930 kb on + strand at 3502.939 kb on - strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.962 kb on - strand at 3502.962 kb on - strand at 3502.962 kb on - strand at 3502.965 kb on + strand at 3502.989 kb on - strand at 3503.151 kb on + strand, within Echvi_2925 at 3503.151 kb on + strand, within Echvi_2925 at 3503.176 kb on - strand, within Echvi_2925 at 3503.376 kb on + strand, within Echvi_2925 at 3503.377 kb on - strand, within Echvi_2925 at 3503.407 kb on - strand, within Echvi_2925 at 3503.427 kb on + strand, within Echvi_2925 at 3503.535 kb on + strand, within Echvi_2925 at 3503.535 kb on + strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.539 kb on + strand, within Echvi_2925 at 3503.540 kb on - strand, within Echvi_2925 at 3503.541 kb on + strand, within Echvi_2925 at 3503.541 kb on + strand, within Echvi_2925 at 3503.542 kb on - strand, within Echvi_2925 at 3503.542 kb on - strand, within Echvi_2925 at 3503.542 kb on - strand, within Echvi_2925 at 3503.607 kb on + strand, within Echvi_2925 at 3503.607 kb on + strand, within Echvi_2925 at 3503.641 kb on + strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.765 kb on + strand at 3503.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 3,502,927 + +1.8 3,502,930 + +0.8 3,502,939 - -0.0 3,502,961 + -0.9 3,502,961 + -0.4 3,502,961 + -0.9 3,502,961 + +1.4 3,502,961 + -0.8 3,502,961 + -1.1 3,502,961 + -2.0 3,502,962 - +1.3 3,502,962 - +1.3 3,502,962 - +1.7 3,502,965 + -1.0 3,502,989 - +0.7 3,503,151 + Echvi_2925 0.27 -0.7 3,503,151 + Echvi_2925 0.27 +1.1 3,503,176 - Echvi_2925 0.30 -0.6 3,503,376 + Echvi_2925 0.51 +0.3 3,503,377 - Echvi_2925 0.52 -3.0 3,503,407 - Echvi_2925 0.55 -1.4 3,503,427 + Echvi_2925 0.57 -0.1 3,503,535 + Echvi_2925 0.69 +1.2 3,503,535 + Echvi_2925 0.69 +0.5 3,503,536 - Echvi_2925 0.69 -0.9 3,503,536 - Echvi_2925 0.69 -0.3 3,503,536 - Echvi_2925 0.69 -0.2 3,503,536 - Echvi_2925 0.69 -0.5 3,503,539 + Echvi_2925 0.69 +0.4 3,503,540 - Echvi_2925 0.69 +2.3 3,503,541 + Echvi_2925 0.69 -2.3 3,503,541 + Echvi_2925 0.69 +2.3 3,503,542 - Echvi_2925 0.69 -0.7 3,503,542 - Echvi_2925 0.69 -1.9 3,503,542 - Echvi_2925 0.69 +0.1 3,503,607 + Echvi_2925 0.76 -0.2 3,503,607 + Echvi_2925 0.76 -0.6 3,503,641 + Echvi_2925 0.80 -1.6 3,503,642 - Echvi_2925 0.80 -1.8 3,503,642 - Echvi_2925 0.80 +2.3 3,503,642 - Echvi_2925 0.80 -1.8 3,503,642 - Echvi_2925 0.80 -3.5 3,503,765 + -0.3 3,503,846 - -0.7
Or see this region's nucleotide sequence