Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2465

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2463 and Echvi_2464 overlap by 4 nucleotidesEchvi_2464 and Echvi_2465 are separated by 138 nucleotidesEchvi_2465 and Echvi_2466 are separated by 109 nucleotidesEchvi_2466 and Echvi_2467 are separated by 2 nucleotides Echvi_2463: Echvi_2463 - Translation initiation factor 1 (eIF-1/SUI1) and related proteins, at 2,923,338 to 2,923,703 _2463 Echvi_2464: Echvi_2464 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,923,700 to 2,924,548 _2464 Echvi_2465: Echvi_2465 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 2,924,687 to 2,925,601 _2465 Echvi_2466: Echvi_2466 - Glutathione peroxidase, at 2,925,711 to 2,926,307 _2466 Echvi_2467: Echvi_2467 - arginyl-tRNA synthetase, at 2,926,310 to 2,928,100 _2467 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2923.757 kb on + strandat 2923.758 kb on - strandat 2923.758 kb on - strandat 2923.759 kb on + strandat 2923.760 kb on - strandat 2923.811 kb on + strand, within Echvi_2464at 2923.888 kb on + strand, within Echvi_2464at 2923.888 kb on + strand, within Echvi_2464at 2924.168 kb on + strand, within Echvi_2464at 2924.253 kb on + strand, within Echvi_2464at 2924.276 kb on - strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.288 kb on - strand, within Echvi_2464at 2924.288 kb on - strand, within Echvi_2464at 2924.288 kb on - strand, within Echvi_2464at 2924.290 kb on - strand, within Echvi_2464at 2924.453 kb on + strand, within Echvi_2464at 2924.453 kb on + strand, within Echvi_2464at 2924.454 kb on - strand, within Echvi_2464at 2924.454 kb on - strand, within Echvi_2464at 2924.548 kb on + strandat 2924.548 kb on + strandat 2924.565 kb on + strandat 2924.603 kb on + strandat 2924.625 kb on - strandat 2924.627 kb on + strandat 2924.628 kb on - strandat 2925.619 kb on - strandat 2925.636 kb on - strandat 2925.638 kb on - strandat 2925.800 kb on - strand, within Echvi_2466at 2925.800 kb on - strand, within Echvi_2466at 2925.803 kb on - strand, within Echvi_2466at 2925.822 kb on - strand, within Echvi_2466at 2925.935 kb on - strand, within Echvi_2466at 2926.064 kb on - strand, within Echvi_2466at 2926.093 kb on - strand, within Echvi_2466at 2926.175 kb on - strand, within Echvi_2466at 2926.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,923,757 + -2.6
2,923,758 - +1.0
2,923,758 - +0.0
2,923,759 + +0.7
2,923,760 - +1.0
2,923,811 + Echvi_2464 0.13 -2.0
2,923,888 + Echvi_2464 0.22 +0.9
2,923,888 + Echvi_2464 0.22 -1.2
2,924,168 + Echvi_2464 0.55 -0.9
2,924,253 + Echvi_2464 0.65 -0.2
2,924,276 - Echvi_2464 0.68 -1.0
2,924,287 + Echvi_2464 0.69 +0.5
2,924,287 + Echvi_2464 0.69 -2.7
2,924,287 + Echvi_2464 0.69 +0.3
2,924,287 + Echvi_2464 0.69 +0.3
2,924,288 - Echvi_2464 0.69 -3.1
2,924,288 - Echvi_2464 0.69 -2.3
2,924,288 - Echvi_2464 0.69 +0.2
2,924,290 - Echvi_2464 0.69 -1.9
2,924,453 + Echvi_2464 0.89 +0.6
2,924,453 + Echvi_2464 0.89 +1.0
2,924,454 - Echvi_2464 0.89 -0.7
2,924,454 - Echvi_2464 0.89 -2.4
2,924,548 + +1.1
2,924,548 + +2.0
2,924,565 + +1.6
2,924,603 + -0.4
2,924,625 - -2.9
2,924,627 + -1.1
2,924,628 - +1.0
2,925,619 - +0.8
2,925,636 - -0.3
2,925,638 - +0.8
2,925,800 - Echvi_2466 0.15 -1.9
2,925,800 - Echvi_2466 0.15 -0.1
2,925,803 - Echvi_2466 0.15 -0.7
2,925,822 - Echvi_2466 0.19 +0.6
2,925,935 - Echvi_2466 0.38 -1.9
2,926,064 - Echvi_2466 0.59 -0.0
2,926,093 - Echvi_2466 0.64 +2.3
2,926,175 - Echvi_2466 0.78 -1.7
2,926,297 - +0.6

Or see this region's nucleotide sequence