Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1744

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1742 and Echvi_1743 overlap by 4 nucleotidesEchvi_1743 and Echvi_1744 overlap by 1 nucleotidesEchvi_1744 and Echvi_1745 are separated by 1 nucleotidesEchvi_1745 and Echvi_1746 overlap by 23 nucleotides Echvi_1742: Echvi_1742 - Uncharacterized protein conserved in archaea, at 2,052,633 to 2,053,076 _1742 Echvi_1743: Echvi_1743 - alpha-L-glutamate ligases, RimK family, at 2,053,073 to 2,053,981 _1743 Echvi_1744: Echvi_1744 - porphobilinogen deaminase, at 2,053,981 to 2,054,916 _1744 Echvi_1745: Echvi_1745 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 2,054,918 to 2,055,763 _1745 Echvi_1746: Echvi_1746 - dTDP-4-dehydrorhamnose reductase, at 2,055,741 to 2,056,673 _1746 Position (kb) 2053 2054 2055Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2052.989 kb on - strand, within Echvi_1742at 2053.022 kb on - strand, within Echvi_1742at 2053.031 kb on - strand, within Echvi_1742at 2053.031 kb on - strand, within Echvi_1742at 2053.067 kb on + strandat 2053.067 kb on + strandat 2053.086 kb on + strandat 2053.109 kb on + strandat 2053.220 kb on + strand, within Echvi_1743at 2053.286 kb on + strand, within Echvi_1743at 2053.286 kb on + strand, within Echvi_1743at 2053.500 kb on + strand, within Echvi_1743at 2053.597 kb on + strand, within Echvi_1743at 2053.765 kb on + strand, within Echvi_1743at 2053.765 kb on + strand, within Echvi_1743at 2053.765 kb on + strand, within Echvi_1743at 2053.819 kb on + strand, within Echvi_1743at 2054.895 kb on + strandat 2054.907 kb on + strandat 2054.907 kb on + strandat 2054.907 kb on + strandat 2054.915 kb on - strandat 2054.927 kb on + strandat 2054.927 kb on + strandat 2055.019 kb on + strand, within Echvi_1745at 2055.019 kb on + strand, within Echvi_1745at 2055.020 kb on - strand, within Echvi_1745at 2055.020 kb on - strand, within Echvi_1745at 2055.020 kb on - strand, within Echvi_1745at 2055.021 kb on + strand, within Echvi_1745at 2055.021 kb on + strand, within Echvi_1745at 2055.021 kb on + strand, within Echvi_1745at 2055.021 kb on + strand, within Echvi_1745at 2055.022 kb on - strand, within Echvi_1745at 2055.022 kb on - strand, within Echvi_1745at 2055.023 kb on + strand, within Echvi_1745at 2055.023 kb on + strand, within Echvi_1745at 2055.023 kb on + strand, within Echvi_1745at 2055.024 kb on - strand, within Echvi_1745at 2055.187 kb on + strand, within Echvi_1745at 2055.299 kb on + strand, within Echvi_1745at 2055.299 kb on + strand, within Echvi_1745at 2055.300 kb on - strand, within Echvi_1745at 2055.320 kb on + strand, within Echvi_1745at 2055.400 kb on + strand, within Echvi_1745at 2055.429 kb on - strand, within Echvi_1745at 2055.444 kb on - strand, within Echvi_1745at 2055.555 kb on + strand, within Echvi_1745at 2055.595 kb on - strand, within Echvi_1745at 2055.595 kb on - strand, within Echvi_1745at 2055.681 kb on + strandat 2055.681 kb on + strandat 2055.681 kb on + strandat 2055.682 kb on - strandat 2055.683 kb on + strandat 2055.683 kb on + strandat 2055.683 kb on + strandat 2055.683 kb on + strandat 2055.683 kb on + strandat 2055.684 kb on - strandat 2055.684 kb on - strandat 2055.684 kb on - strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.688 kb on + strandat 2055.689 kb on - strandat 2055.699 kb on + strandat 2055.700 kb on - strandat 2055.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,052,989 - Echvi_1742 0.80 +0.0
2,053,022 - Echvi_1742 0.88 +2.0
2,053,031 - Echvi_1742 0.90 -0.4
2,053,031 - Echvi_1742 0.90 +2.0
2,053,067 + -2.1
2,053,067 + -0.6
2,053,086 + -4.7
2,053,109 + -2.9
2,053,220 + Echvi_1743 0.16 -1.1
2,053,286 + Echvi_1743 0.23 -1.4
2,053,286 + Echvi_1743 0.23 -2.1
2,053,500 + Echvi_1743 0.47 -3.0
2,053,597 + Echvi_1743 0.58 -1.6
2,053,765 + Echvi_1743 0.76 -2.0
2,053,765 + Echvi_1743 0.76 -4.5
2,053,765 + Echvi_1743 0.76 -1.9
2,053,819 + Echvi_1743 0.82 -1.9
2,054,895 + -1.9
2,054,907 + -1.9
2,054,907 + -0.9
2,054,907 + -2.0
2,054,915 - -1.0
2,054,927 + -1.5
2,054,927 + -1.5
2,055,019 + Echvi_1745 0.12 -4.6
2,055,019 + Echvi_1745 0.12 -2.2
2,055,020 - Echvi_1745 0.12 +0.4
2,055,020 - Echvi_1745 0.12 +1.4
2,055,020 - Echvi_1745 0.12 +1.9
2,055,021 + Echvi_1745 0.12 -5.4
2,055,021 + Echvi_1745 0.12 -3.8
2,055,021 + Echvi_1745 0.12 -2.3
2,055,021 + Echvi_1745 0.12 -2.7
2,055,022 - Echvi_1745 0.12 +1.1
2,055,022 - Echvi_1745 0.12 +0.4
2,055,023 + Echvi_1745 0.12 -5.1
2,055,023 + Echvi_1745 0.12 -1.2
2,055,023 + Echvi_1745 0.12 -2.5
2,055,024 - Echvi_1745 0.13 +1.6
2,055,187 + Echvi_1745 0.32 -1.8
2,055,299 + Echvi_1745 0.45 -3.7
2,055,299 + Echvi_1745 0.45 -3.9
2,055,300 - Echvi_1745 0.45 +1.9
2,055,320 + Echvi_1745 0.48 -1.8
2,055,400 + Echvi_1745 0.57 -4.8
2,055,429 - Echvi_1745 0.60 -0.2
2,055,444 - Echvi_1745 0.62 +1.3
2,055,555 + Echvi_1745 0.75 -1.1
2,055,595 - Echvi_1745 0.80 +1.8
2,055,595 - Echvi_1745 0.80 -0.6
2,055,681 + -1.7
2,055,681 + -3.7
2,055,681 + -0.6
2,055,682 - -0.1
2,055,683 + -2.7
2,055,683 + -3.3
2,055,683 + -1.4
2,055,683 + -3.0
2,055,683 + -2.0
2,055,684 - +2.7
2,055,684 - +1.7
2,055,684 - +0.5
2,055,685 + +1.2
2,055,685 + -0.4
2,055,686 - +1.8
2,055,686 - +2.2
2,055,686 - +0.4
2,055,688 + -2.4
2,055,689 - +0.5
2,055,699 + -3.5
2,055,700 - +2.0
2,055,735 - -0.8

Or see this region's nucleotide sequence