Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1447

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1445 and Echvi_1446 are separated by 313 nucleotidesEchvi_1446 and Echvi_1447 are separated by 19 nucleotidesEchvi_1447 and Echvi_1448 are separated by 262 nucleotidesEchvi_1448 and Echvi_1449 are separated by 38 nucleotides Echvi_1445: Echvi_1445 - peptide chain release factor 1, at 1,658,087 to 1,659,163 _1445 Echvi_1446: Echvi_1446 - Protein of unknown function (DUF3365)., at 1,659,477 to 1,660,130 _1446 Echvi_1447: Echvi_1447 - hypothetical protein, at 1,660,150 to 1,660,779 _1447 Echvi_1448: Echvi_1448 - 3-hydroxyanthranilate 3,4-dioxygenase, at 1,661,042 to 1,661,554 _1448 Echvi_1449: Echvi_1449 - kynureninase, at 1,661,593 to 1,662,873 _1449 Position (kb) 1660 1661Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1659.164 kb on - strandat 1659.275 kb on + strandat 1659.354 kb on - strandat 1659.364 kb on + strandat 1659.446 kb on + strandat 1659.447 kb on - strandat 1659.459 kb on - strandat 1659.460 kb on + strandat 1659.461 kb on - strandat 1659.531 kb on - strandat 1659.690 kb on - strand, within Echvi_1446at 1659.728 kb on + strand, within Echvi_1446at 1659.850 kb on + strand, within Echvi_1446at 1659.864 kb on + strand, within Echvi_1446at 1659.865 kb on - strand, within Echvi_1446at 1659.865 kb on - strand, within Echvi_1446at 1659.933 kb on + strand, within Echvi_1446at 1659.933 kb on + strand, within Echvi_1446at 1659.934 kb on - strand, within Echvi_1446at 1659.934 kb on - strand, within Echvi_1446at 1659.935 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.035 kb on + strand, within Echvi_1446at 1660.046 kb on + strand, within Echvi_1446at 1660.047 kb on - strand, within Echvi_1446at 1660.066 kb on + strandat 1660.067 kb on - strandat 1660.128 kb on + strandat 1660.216 kb on - strand, within Echvi_1447at 1660.237 kb on + strand, within Echvi_1447at 1660.409 kb on - strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.497 kb on - strand, within Echvi_1447at 1660.497 kb on - strand, within Echvi_1447at 1660.553 kb on + strand, within Echvi_1447at 1660.554 kb on - strand, within Echvi_1447at 1660.565 kb on - strand, within Echvi_1447at 1660.604 kb on - strand, within Echvi_1447at 1660.646 kb on - strand, within Echvi_1447at 1660.646 kb on - strand, within Echvi_1447at 1660.706 kb on + strand, within Echvi_1447at 1660.706 kb on + strand, within Echvi_1447at 1660.707 kb on - strand, within Echvi_1447at 1660.780 kb on + strandat 1660.781 kb on - strandat 1660.805 kb on - strandat 1660.805 kb on - strandat 1660.816 kb on + strandat 1660.817 kb on - strandat 1660.846 kb on + strandat 1660.847 kb on + strandat 1660.847 kb on + strandat 1660.848 kb on - strandat 1660.848 kb on - strandat 1660.851 kb on + strandat 1660.851 kb on + strandat 1660.851 kb on + strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.859 kb on - strandat 1660.865 kb on + strandat 1660.896 kb on - strandat 1660.896 kb on - strandat 1660.906 kb on + strandat 1660.927 kb on + strandat 1660.927 kb on + strandat 1660.951 kb on - strandat 1660.961 kb on + strandat 1660.961 kb on + strandat 1660.961 kb on + strandat 1660.961 kb on + strandat 1660.962 kb on - strandat 1661.130 kb on - strand, within Echvi_1448at 1661.130 kb on - strand, within Echvi_1448at 1661.151 kb on + strand, within Echvi_1448at 1661.163 kb on + strand, within Echvi_1448at 1661.190 kb on - strand, within Echvi_1448at 1661.190 kb on - strand, within Echvi_1448at 1661.195 kb on + strand, within Echvi_1448at 1661.196 kb on - strand, within Echvi_1448at 1661.197 kb on + strand, within Echvi_1448at 1661.197 kb on + strand, within Echvi_1448at 1661.197 kb on + strand, within Echvi_1448at 1661.198 kb on - strand, within Echvi_1448at 1661.220 kb on - strand, within Echvi_1448at 1661.347 kb on + strand, within Echvi_1448at 1661.401 kb on + strand, within Echvi_1448at 1661.401 kb on + strand, within Echvi_1448at 1661.402 kb on - strand, within Echvi_1448at 1661.428 kb on + strand, within Echvi_1448at 1661.428 kb on + strand, within Echvi_1448at 1661.429 kb on - strand, within Echvi_1448at 1661.429 kb on - strand, within Echvi_1448at 1661.429 kb on - strand, within Echvi_1448at 1661.434 kb on - strand, within Echvi_1448at 1661.434 kb on - strand, within Echvi_1448at 1661.434 kb on - strand, within Echvi_1448at 1661.434 kb on - strand, within Echvi_1448at 1661.435 kb on + strand, within Echvi_1448at 1661.435 kb on + strand, within Echvi_1448at 1661.436 kb on - strand, within Echvi_1448at 1661.444 kb on + strand, within Echvi_1448at 1661.445 kb on - strand, within Echvi_1448at 1661.445 kb on - strand, within Echvi_1448at 1661.466 kb on + strand, within Echvi_1448at 1661.466 kb on + strand, within Echvi_1448at 1661.558 kb on + strandat 1661.559 kb on - strandat 1661.559 kb on - strandat 1661.559 kb on - strandat 1661.574 kb on + strandat 1661.574 kb on + strandat 1661.575 kb on - strandat 1661.580 kb on - strandat 1661.587 kb on + strandat 1661.588 kb on - strandat 1661.588 kb on - strandat 1661.592 kb on + strandat 1661.592 kb on + strandat 1661.592 kb on + strandat 1661.592 kb on + strandat 1661.592 kb on + strandat 1661.592 kb on + strandat 1661.593 kb on - strandat 1661.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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1,659,164 - -0.4
1,659,275 + -1.2
1,659,354 - +0.0
1,659,364 + +1.9
1,659,446 + -3.3
1,659,447 - +0.3
1,659,459 - -1.7
1,659,460 + +0.7
1,659,461 - +0.0
1,659,531 - -1.5
1,659,690 - Echvi_1446 0.33 -1.2
1,659,728 + Echvi_1446 0.38 -2.1
1,659,850 + Echvi_1446 0.57 +0.3
1,659,864 + Echvi_1446 0.59 +0.1
1,659,865 - Echvi_1446 0.59 -0.1
1,659,865 - Echvi_1446 0.59 +2.1
1,659,933 + Echvi_1446 0.70 -2.3
1,659,933 + Echvi_1446 0.70 -1.7
1,659,934 - Echvi_1446 0.70 -1.0
1,659,934 - Echvi_1446 0.70 +3.1
1,659,935 + Echvi_1446 0.70 -1.3
1,660,033 + Echvi_1446 0.85 -1.6
1,660,033 + Echvi_1446 0.85 +0.1
1,660,033 + Echvi_1446 0.85 -2.1
1,660,033 + Echvi_1446 0.85 +1.3
1,660,033 + Echvi_1446 0.85 +0.9
1,660,034 - Echvi_1446 0.85 -1.0
1,660,034 - Echvi_1446 0.85 +1.6
1,660,034 - Echvi_1446 0.85 +1.7
1,660,034 - Echvi_1446 0.85 +1.1
1,660,034 - Echvi_1446 0.85 -0.2
1,660,034 - Echvi_1446 0.85 -1.6
1,660,035 + Echvi_1446 0.85 +0.9
1,660,046 + Echvi_1446 0.87 -0.1
1,660,047 - Echvi_1446 0.87 +1.0
1,660,066 + -0.8
1,660,067 - -0.4
1,660,128 + +2.9
1,660,216 - Echvi_1447 0.10 -0.5
1,660,237 + Echvi_1447 0.14 -1.5
1,660,409 - Echvi_1447 0.41 -0.0
1,660,496 + Echvi_1447 0.55 -1.5
1,660,496 + Echvi_1447 0.55 -0.5
1,660,496 + Echvi_1447 0.55 -0.8
1,660,496 + Echvi_1447 0.55 -1.3
1,660,496 + Echvi_1447 0.55 +0.8
1,660,497 - Echvi_1447 0.55 -0.8
1,660,497 - Echvi_1447 0.55 +2.0
1,660,553 + Echvi_1447 0.64 -0.0
1,660,554 - Echvi_1447 0.64 -0.2
1,660,565 - Echvi_1447 0.66 -1.0
1,660,604 - Echvi_1447 0.72 -0.2
1,660,646 - Echvi_1447 0.79 -0.5
1,660,646 - Echvi_1447 0.79 +0.6
1,660,706 + Echvi_1447 0.88 -0.0
1,660,706 + Echvi_1447 0.88 -0.5
1,660,707 - Echvi_1447 0.88 -0.0
1,660,780 + +1.1
1,660,781 - -0.7
1,660,805 - +0.5
1,660,805 - -0.4
1,660,816 + +0.4
1,660,817 - -0.7
1,660,846 + +1.6
1,660,847 + +0.7
1,660,847 + -1.2
1,660,848 - -0.4
1,660,848 - +3.1
1,660,851 + +1.1
1,660,851 + +0.2
1,660,851 + +0.4
1,660,852 - +2.6
1,660,852 - +0.3
1,660,852 - +0.3
1,660,852 - -2.4
1,660,852 - +0.3
1,660,859 - +1.2
1,660,865 + +0.8
1,660,896 - -0.7
1,660,896 - +1.7
1,660,906 + +0.9
1,660,927 + +1.3
1,660,927 + +0.1
1,660,951 - +0.6
1,660,961 + +1.1
1,660,961 + -2.5
1,660,961 + +0.7
1,660,961 + -0.9
1,660,962 - -1.9
1,661,130 - Echvi_1448 0.17 -1.9
1,661,130 - Echvi_1448 0.17 -1.9
1,661,151 + Echvi_1448 0.21 -0.9
1,661,163 + Echvi_1448 0.24 -0.9
1,661,190 - Echvi_1448 0.29 -1.2
1,661,190 - Echvi_1448 0.29 -1.9
1,661,195 + Echvi_1448 0.30 +2.2
1,661,196 - Echvi_1448 0.30 -0.8
1,661,197 + Echvi_1448 0.30 +1.3
1,661,197 + Echvi_1448 0.30 +1.7
1,661,197 + Echvi_1448 0.30 +1.1
1,661,198 - Echvi_1448 0.30 -1.8
1,661,220 - Echvi_1448 0.35 -1.3
1,661,347 + Echvi_1448 0.59 +0.9
1,661,401 + Echvi_1448 0.70 +0.1
1,661,401 + Echvi_1448 0.70 +0.8
1,661,402 - Echvi_1448 0.70 -3.0
1,661,428 + Echvi_1448 0.75 +1.9
1,661,428 + Echvi_1448 0.75 -0.6
1,661,429 - Echvi_1448 0.75 +0.6
1,661,429 - Echvi_1448 0.75 +0.1
1,661,429 - Echvi_1448 0.75 +1.2
1,661,434 - Echvi_1448 0.76 -2.6
1,661,434 - Echvi_1448 0.76 -0.1
1,661,434 - Echvi_1448 0.76 -0.6
1,661,434 - Echvi_1448 0.76 -0.3
1,661,435 + Echvi_1448 0.77 -1.2
1,661,435 + Echvi_1448 0.77 +0.3
1,661,436 - Echvi_1448 0.77 +0.3
1,661,444 + Echvi_1448 0.78 +0.8
1,661,445 - Echvi_1448 0.79 +0.4
1,661,445 - Echvi_1448 0.79 +0.6
1,661,466 + Echvi_1448 0.83 -1.0
1,661,466 + Echvi_1448 0.83 +0.0
1,661,558 + -1.9
1,661,559 - -1.7
1,661,559 - -0.2
1,661,559 - +0.9
1,661,574 + -0.9
1,661,574 + -0.0
1,661,575 - -2.3
1,661,580 - -2.2
1,661,587 + -0.1
1,661,588 - -0.5
1,661,588 - -3.2
1,661,592 + +0.5
1,661,592 + +1.4
1,661,592 + +0.8
1,661,592 + +0.3
1,661,592 + +0.1
1,661,592 + +1.3
1,661,593 - -1.6
1,661,688 - +0.3

Or see this region's nucleotide sequence