Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0488

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0487 and Echvi_0488 are separated by 250 nucleotidesEchvi_0488 and Echvi_0489 are separated by 225 nucleotides Echvi_0487: Echvi_0487 - Highly conserved protein containing a thioredoxin domain, at 538,824 to 540,038 _0487 Echvi_0488: Echvi_0488 - hypothetical protein, at 540,289 to 541,599 _0488 Echvi_0489: Echvi_0489 - Uncharacterized protein conserved in bacteria, at 541,825 to 543,066 _0489 Position (kb) 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 539.338 kb on + strand, within Echvi_0487at 539.353 kb on + strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.420 kb on - strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.593 kb on + strand, within Echvi_0487at 539.633 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.639 kb on - strand, within Echvi_0487at 539.639 kb on - strand, within Echvi_0487at 539.645 kb on + strand, within Echvi_0487at 539.740 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.831 kb on - strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.871 kb on - strand, within Echvi_0487at 539.872 kb on + strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.878 kb on + strand, within Echvi_0487at 539.878 kb on + strand, within Echvi_0487at 539.879 kb on - strand, within Echvi_0487at 539.903 kb on + strand, within Echvi_0487at 539.919 kb on - strandat 540.050 kb on + strandat 540.053 kb on + strandat 540.054 kb on - strandat 540.054 kb on - strandat 540.065 kb on + strandat 540.070 kb on - strandat 540.140 kb on + strandat 540.140 kb on + strandat 540.140 kb on + strandat 540.186 kb on - strandat 540.189 kb on + strandat 540.195 kb on + strandat 540.269 kb on + strandat 540.269 kb on + strandat 540.270 kb on - strandat 540.273 kb on + strandat 540.273 kb on + strandat 540.274 kb on - strandat 540.274 kb on - strandat 540.280 kb on + strandat 540.280 kb on + strandat 540.283 kb on + strandat 540.283 kb on + strandat 540.284 kb on - strandat 540.290 kb on + strandat 540.295 kb on + strandat 540.401 kb on - strandat 540.408 kb on + strandat 540.409 kb on - strandat 540.413 kb on + strandat 540.489 kb on + strand, within Echvi_0488at 540.489 kb on + strand, within Echvi_0488at 540.489 kb on + strand, within Echvi_0488at 540.492 kb on - strand, within Echvi_0488at 540.508 kb on - strand, within Echvi_0488at 540.534 kb on + strand, within Echvi_0488at 540.540 kb on - strand, within Echvi_0488at 540.622 kb on + strand, within Echvi_0488at 540.693 kb on - strand, within Echvi_0488at 540.719 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.731 kb on + strand, within Echvi_0488at 540.731 kb on + strand, within Echvi_0488at 540.732 kb on - strand, within Echvi_0488at 540.806 kb on + strand, within Echvi_0488at 540.806 kb on + strand, within Echvi_0488at 540.839 kb on + strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.971 kb on - strand, within Echvi_0488at 540.986 kb on + strand, within Echvi_0488at 541.058 kb on + strand, within Echvi_0488at 541.219 kb on - strand, within Echvi_0488at 541.406 kb on + strand, within Echvi_0488at 541.406 kb on + strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.431 kb on + strand, within Echvi_0488at 541.479 kb on + strandat 541.480 kb on - strandat 541.599 kb on + strandat 541.600 kb on - strandat 541.600 kb on - strandat 541.603 kb on - strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.608 kb on - strandat 541.626 kb on - strandat 541.656 kb on - strandat 541.687 kb on + strandat 541.696 kb on + strandat 541.696 kb on + strandat 541.839 kb on + strandat 541.930 kb on + strandat 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.980 kb on - strand, within Echvi_0489at 541.980 kb on - strand, within Echvi_0489at 542.111 kb on - strand, within Echvi_0489at 542.205 kb on + strand, within Echvi_0489at 542.206 kb on - strand, within Echvi_0489at 542.243 kb on + strand, within Echvi_0489at 542.357 kb on + strand, within Echvi_0489at 542.387 kb on + strand, within Echvi_0489at 542.388 kb on - strand, within Echvi_0489at 542.449 kb on - strand, within Echvi_0489at 542.486 kb on - strand, within Echvi_0489

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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539,338 + Echvi_0487 0.42 +0.5
539,353 + Echvi_0487 0.44 -1.4
539,354 - Echvi_0487 0.44 -2.8
539,354 - Echvi_0487 0.44 -2.6
539,419 + Echvi_0487 0.49 +1.5
539,419 + Echvi_0487 0.49 +0.2
539,419 + Echvi_0487 0.49 -0.2
539,420 - Echvi_0487 0.49 +1.6
539,477 + Echvi_0487 0.54 -0.6
539,477 + Echvi_0487 0.54 -2.8
539,477 + Echvi_0487 0.54 +1.2
539,593 + Echvi_0487 0.63 +0.8
539,633 + Echvi_0487 0.67 -1.8
539,638 + Echvi_0487 0.67 +0.6
539,638 + Echvi_0487 0.67 +0.2
539,638 + Echvi_0487 0.67 -1.6
539,639 - Echvi_0487 0.67 +0.2
539,639 - Echvi_0487 0.67 -0.1
539,645 + Echvi_0487 0.68 -1.2
539,740 + Echvi_0487 0.75 -2.7
539,830 + Echvi_0487 0.83 +0.5
539,830 + Echvi_0487 0.83 -0.5
539,830 + Echvi_0487 0.83 +0.2
539,831 - Echvi_0487 0.83 +0.9
539,870 + Echvi_0487 0.86 +1.3
539,870 + Echvi_0487 0.86 -0.3
539,870 + Echvi_0487 0.86 +1.0
539,870 + Echvi_0487 0.86 -0.1
539,870 + Echvi_0487 0.86 +0.8
539,871 - Echvi_0487 0.86 -0.3
539,872 + Echvi_0487 0.86 -0.0
539,873 - Echvi_0487 0.86 -2.2
539,873 - Echvi_0487 0.86 +0.7
539,873 - Echvi_0487 0.86 +0.1
539,876 + Echvi_0487 0.87 +0.3
539,876 + Echvi_0487 0.87 -2.6
539,876 + Echvi_0487 0.87 +2.4
539,876 + Echvi_0487 0.87 -2.8
539,876 + Echvi_0487 0.87 -1.2
539,877 - Echvi_0487 0.87 -1.4
539,877 - Echvi_0487 0.87 +1.7
539,877 - Echvi_0487 0.87 -1.4
539,877 - Echvi_0487 0.87 +1.3
539,877 - Echvi_0487 0.87 -1.6
539,877 - Echvi_0487 0.87 +3.5
539,877 - Echvi_0487 0.87 -0.7
539,877 - Echvi_0487 0.87 +0.4
539,877 - Echvi_0487 0.87 +0.6
539,877 - Echvi_0487 0.87 -2.2
539,878 + Echvi_0487 0.87 +1.4
539,878 + Echvi_0487 0.87 -1.2
539,879 - Echvi_0487 0.87 -2.6
539,903 + Echvi_0487 0.89 +0.0
539,919 - -2.2
540,050 + +0.4
540,053 + -1.6
540,054 - +0.6
540,054 - -0.4
540,065 + -2.4
540,070 - +0.6
540,140 + +1.5
540,140 + -0.7
540,140 + +0.5
540,186 - +0.3
540,189 + -0.8
540,195 + +0.4
540,269 + +0.2
540,269 + -0.6
540,270 - +0.7
540,273 + -0.8
540,273 + +0.1
540,274 - +2.6
540,274 - -1.6
540,280 + +0.2
540,280 + +0.2
540,283 + -0.9
540,283 + -2.4
540,284 - +0.3
540,290 + +0.6
540,295 + -1.5
540,401 - -0.5
540,408 + -2.2
540,409 - +0.3
540,413 + -1.0
540,489 + Echvi_0488 0.15 -1.6
540,489 + Echvi_0488 0.15 -0.2
540,489 + Echvi_0488 0.15 +2.3
540,492 - Echvi_0488 0.15 +1.6
540,508 - Echvi_0488 0.17 +0.3
540,534 + Echvi_0488 0.19 +0.7
540,540 - Echvi_0488 0.19 -0.5
540,622 + Echvi_0488 0.25 -1.8
540,693 - Echvi_0488 0.31 +0.9
540,719 + Echvi_0488 0.33 +0.5
540,723 + Echvi_0488 0.33 -2.2
540,723 + Echvi_0488 0.33 -2.9
540,723 + Echvi_0488 0.33 +0.3
540,723 + Echvi_0488 0.33 +0.6
540,724 - Echvi_0488 0.33 -0.7
540,724 - Echvi_0488 0.33 +1.3
540,724 - Echvi_0488 0.33 +2.0
540,724 - Echvi_0488 0.33 -1.9
540,724 - Echvi_0488 0.33 +1.1
540,731 + Echvi_0488 0.34 +0.6
540,731 + Echvi_0488 0.34 +0.2
540,732 - Echvi_0488 0.34 +1.8
540,806 + Echvi_0488 0.39 -1.2
540,806 + Echvi_0488 0.39 +0.7
540,839 + Echvi_0488 0.42 -1.3
540,924 - Echvi_0488 0.48 +0.5
540,924 - Echvi_0488 0.48 -0.9
540,924 - Echvi_0488 0.48 +1.6
540,971 - Echvi_0488 0.52 +1.0
540,986 + Echvi_0488 0.53 -1.9
541,058 + Echvi_0488 0.59 +1.3
541,219 - Echvi_0488 0.71 +2.1
541,406 + Echvi_0488 0.85 +0.3
541,406 + Echvi_0488 0.85 -1.2
541,407 - Echvi_0488 0.85 -1.3
541,407 - Echvi_0488 0.85 +1.6
541,407 - Echvi_0488 0.85 +0.3
541,410 - Echvi_0488 0.86 +2.1
541,410 - Echvi_0488 0.86 +0.8
541,410 - Echvi_0488 0.86 +1.5
541,431 + Echvi_0488 0.87 -0.1
541,479 + +1.1
541,480 - +0.1
541,599 + +0.7
541,600 - +0.8
541,600 - -0.4
541,603 - +0.6
541,607 + -0.7
541,607 + -0.8
541,607 + +0.8
541,607 + -1.1
541,607 + -1.9
541,608 - -0.2
541,626 - +1.3
541,656 - +0.2
541,687 + -0.8
541,696 + -1.0
541,696 + +0.1
541,839 + +2.4
541,930 + -2.0
541,979 + Echvi_0489 0.12 -0.9
541,979 + Echvi_0489 0.12 -1.7
541,979 + Echvi_0489 0.12 -2.3
541,979 + Echvi_0489 0.12 -0.2
541,980 - Echvi_0489 0.12 +0.4
541,980 - Echvi_0489 0.12 -0.0
542,111 - Echvi_0489 0.23 -1.4
542,205 + Echvi_0489 0.31 -0.2
542,206 - Echvi_0489 0.31 +0.9
542,243 + Echvi_0489 0.34 -0.9
542,357 + Echvi_0489 0.43 -1.4
542,387 + Echvi_0489 0.45 -0.8
542,388 - Echvi_0489 0.45 +0.1
542,449 - Echvi_0489 0.50 +1.1
542,486 - Echvi_0489 0.53 -1.2

Or see this region's nucleotide sequence