Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0396

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0395 and Echvi_0396 are separated by 360 nucleotidesEchvi_0396 and Echvi_0397 are separated by 189 nucleotides Echvi_0395: Echvi_0395 - DNA repair proteins, at 419,045 to 419,515 _0395 Echvi_0396: Echvi_0396 - Transcriptional regulators, at 419,876 to 420,922 _0396 Echvi_0397: Echvi_0397 - hypothetical protein, at 421,112 to 422,476 _0397 Position (kb) 419 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 418.931 kb on + strandat 418.935 kb on + strandat 418.935 kb on + strandat 418.936 kb on - strandat 418.943 kb on + strandat 418.944 kb on - strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.096 kb on + strand, within Echvi_0395at 419.096 kb on + strand, within Echvi_0395at 419.183 kb on - strand, within Echvi_0395at 419.224 kb on + strand, within Echvi_0395at 419.665 kb on + strandat 419.693 kb on + strandat 419.701 kb on + strandat 419.720 kb on + strandat 419.721 kb on - strandat 419.722 kb on + strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.731 kb on - strandat 419.731 kb on - strandat 419.736 kb on + strandat 419.749 kb on + strandat 419.759 kb on + strandat 419.806 kb on - strandat 419.827 kb on - strandat 419.829 kb on - strandat 419.829 kb on - strandat 419.850 kb on + strandat 419.851 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.914 kb on + strandat 420.020 kb on - strand, within Echvi_0396at 420.025 kb on + strand, within Echvi_0396at 420.028 kb on - strand, within Echvi_0396at 420.036 kb on - strand, within Echvi_0396at 420.036 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.047 kb on + strand, within Echvi_0396at 420.085 kb on + strand, within Echvi_0396at 420.086 kb on - strand, within Echvi_0396at 420.120 kb on + strand, within Echvi_0396at 420.137 kb on - strand, within Echvi_0396at 420.231 kb on + strand, within Echvi_0396at 420.232 kb on - strand, within Echvi_0396at 420.235 kb on + strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.319 kb on + strand, within Echvi_0396at 420.340 kb on - strand, within Echvi_0396at 420.362 kb on + strand, within Echvi_0396at 420.447 kb on + strand, within Echvi_0396at 420.460 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.481 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.499 kb on - strand, within Echvi_0396at 420.529 kb on + strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.534 kb on - strand, within Echvi_0396at 420.534 kb on - strand, within Echvi_0396at 420.535 kb on + strand, within Echvi_0396at 420.536 kb on - strand, within Echvi_0396at 420.573 kb on + strand, within Echvi_0396at 420.573 kb on + strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.604 kb on + strand, within Echvi_0396at 420.621 kb on + strand, within Echvi_0396at 420.622 kb on - strand, within Echvi_0396at 420.630 kb on - strand, within Echvi_0396at 420.630 kb on - strand, within Echvi_0396at 420.641 kb on + strand, within Echvi_0396at 420.645 kb on + strand, within Echvi_0396at 420.650 kb on + strand, within Echvi_0396at 420.668 kb on + strand, within Echvi_0396at 420.690 kb on + strand, within Echvi_0396at 420.691 kb on - strand, within Echvi_0396at 420.691 kb on - strand, within Echvi_0396at 420.693 kb on + strand, within Echvi_0396at 420.719 kb on + strand, within Echvi_0396at 420.742 kb on + strand, within Echvi_0396at 420.743 kb on - strand, within Echvi_0396at 420.743 kb on - strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.770 kb on + strand, within Echvi_0396at 420.774 kb on + strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.824 kb on + strandat 420.842 kb on - strandat 420.863 kb on + strandat 420.863 kb on + strandat 420.874 kb on - strandat 420.874 kb on - strandat 420.943 kb on - strandat 420.949 kb on + strandat 421.060 kb on + strandat 421.072 kb on + strandat 421.207 kb on - strandat 421.245 kb on + strandat 421.246 kb on - strandat 421.275 kb on - strand, within Echvi_0397at 421.322 kb on - strand, within Echvi_0397at 421.485 kb on + strand, within Echvi_0397at 421.557 kb on + strand, within Echvi_0397at 421.561 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.584 kb on - strand, within Echvi_0397at 421.593 kb on + strand, within Echvi_0397at 421.594 kb on - strand, within Echvi_0397at 421.608 kb on - strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.691 kb on - strand, within Echvi_0397at 421.736 kb on + strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.838 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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418,931 + -2.3
418,935 + -0.1
418,935 + +0.2
418,936 - +1.9
418,943 + +2.2
418,944 - -2.2
419,067 + -0.8
419,067 + -2.8
419,067 + -2.0
419,096 + Echvi_0395 0.11 +0.5
419,096 + Echvi_0395 0.11 -1.2
419,183 - Echvi_0395 0.29 +0.5
419,224 + Echvi_0395 0.38 +0.1
419,665 + -1.0
419,693 + +0.3
419,701 + -0.0
419,720 + -0.2
419,721 - +0.1
419,722 + -2.4
419,723 - +1.1
419,723 - -1.4
419,723 - +1.1
419,723 - -2.6
419,723 - +0.2
419,726 + -0.5
419,726 + -1.5
419,726 + +0.7
419,731 - +0.8
419,731 - -1.6
419,736 + +1.9
419,749 + +0.6
419,759 + +0.2
419,806 - +0.6
419,827 - -3.1
419,829 - +1.0
419,829 - +1.0
419,850 + -0.8
419,851 - +1.1
419,882 - -1.0
419,882 - +1.3
419,882 - +0.3
419,882 - -0.2
419,882 - +0.2
419,914 + +0.3
420,020 - Echvi_0396 0.14 -0.9
420,025 + Echvi_0396 0.14 +0.3
420,028 - Echvi_0396 0.15 +0.5
420,036 - Echvi_0396 0.15 +2.2
420,036 - Echvi_0396 0.15 +0.4
420,042 - Echvi_0396 0.16 +0.4
420,042 - Echvi_0396 0.16 +1.4
420,042 - Echvi_0396 0.16 -0.3
420,042 - Echvi_0396 0.16 +2.2
420,047 + Echvi_0396 0.16 +0.9
420,085 + Echvi_0396 0.20 +0.5
420,086 - Echvi_0396 0.20 -0.3
420,120 + Echvi_0396 0.23 -1.2
420,137 - Echvi_0396 0.25 -0.8
420,231 + Echvi_0396 0.34 +0.3
420,232 - Echvi_0396 0.34 -0.2
420,235 + Echvi_0396 0.34 +1.0
420,236 - Echvi_0396 0.34 +1.2
420,236 - Echvi_0396 0.34 -0.8
420,257 + Echvi_0396 0.36 -0.8
420,257 + Echvi_0396 0.36 +1.2
420,259 + Echvi_0396 0.37 +0.8
420,259 + Echvi_0396 0.37 -0.2
420,259 + Echvi_0396 0.37 +2.7
420,259 + Echvi_0396 0.37 +2.2
420,259 + Echvi_0396 0.37 -2.3
420,259 + Echvi_0396 0.37 +0.8
420,259 + Echvi_0396 0.37 +1.0
420,259 + Echvi_0396 0.37 +0.5
420,259 + Echvi_0396 0.37 +0.4
420,259 + Echvi_0396 0.37 +1.3
420,259 + Echvi_0396 0.37 -0.3
420,259 + Echvi_0396 0.37 -0.3
420,259 + Echvi_0396 0.37 -0.6
420,259 + Echvi_0396 0.37 -0.2
420,259 + Echvi_0396 0.37 +0.2
420,259 + Echvi_0396 0.37 +0.6
420,259 + Echvi_0396 0.37 +0.7
420,259 + Echvi_0396 0.37 -2.1
420,260 - Echvi_0396 0.37 -1.3
420,260 - Echvi_0396 0.37 +0.4
420,260 - Echvi_0396 0.37 -0.1
420,260 - Echvi_0396 0.37 -0.5
420,260 - Echvi_0396 0.37 +0.7
420,260 - Echvi_0396 0.37 +0.8
420,260 - Echvi_0396 0.37 +1.7
420,319 + Echvi_0396 0.42 -0.1
420,340 - Echvi_0396 0.44 -2.0
420,362 + Echvi_0396 0.46 -2.5
420,447 + Echvi_0396 0.55 -1.9
420,460 + Echvi_0396 0.56 +0.3
420,473 + Echvi_0396 0.57 -0.8
420,473 + Echvi_0396 0.57 -0.4
420,480 - Echvi_0396 0.58 -0.6
420,480 - Echvi_0396 0.58 +1.2
420,480 - Echvi_0396 0.58 -1.8
420,481 + Echvi_0396 0.58 +0.9
420,492 + Echvi_0396 0.59 +0.8
420,492 + Echvi_0396 0.59 +1.5
420,492 + Echvi_0396 0.59 -0.1
420,493 - Echvi_0396 0.59 -0.8
420,493 - Echvi_0396 0.59 -1.5
420,493 - Echvi_0396 0.59 +0.3
420,493 - Echvi_0396 0.59 -0.7
420,493 - Echvi_0396 0.59 -1.2
420,499 - Echvi_0396 0.60 -1.5
420,529 + Echvi_0396 0.62 -1.3
420,530 - Echvi_0396 0.62 -1.5
420,530 - Echvi_0396 0.62 +1.8
420,530 - Echvi_0396 0.62 +0.9
420,534 - Echvi_0396 0.63 -1.5
420,534 - Echvi_0396 0.63 +1.5
420,535 + Echvi_0396 0.63 +2.4
420,536 - Echvi_0396 0.63 +0.2
420,573 + Echvi_0396 0.67 -0.1
420,573 + Echvi_0396 0.67 +1.3
420,574 - Echvi_0396 0.67 +1.6
420,574 - Echvi_0396 0.67 -0.0
420,574 - Echvi_0396 0.67 +2.2
420,574 - Echvi_0396 0.67 -0.8
420,604 + Echvi_0396 0.70 -1.0
420,621 + Echvi_0396 0.71 -0.5
420,622 - Echvi_0396 0.71 +2.3
420,630 - Echvi_0396 0.72 -0.9
420,630 - Echvi_0396 0.72 -0.4
420,641 + Echvi_0396 0.73 -2.0
420,645 + Echvi_0396 0.73 -0.0
420,650 + Echvi_0396 0.74 -0.7
420,668 + Echvi_0396 0.76 +1.0
420,690 + Echvi_0396 0.78 -1.4
420,691 - Echvi_0396 0.78 +0.2
420,691 - Echvi_0396 0.78 -2.2
420,693 + Echvi_0396 0.78 +0.8
420,719 + Echvi_0396 0.81 -0.6
420,742 + Echvi_0396 0.83 +2.3
420,743 - Echvi_0396 0.83 +2.8
420,743 - Echvi_0396 0.83 +0.2
420,744 + Echvi_0396 0.83 +1.3
420,744 + Echvi_0396 0.83 +1.6
420,744 + Echvi_0396 0.83 -1.0
420,770 + Echvi_0396 0.85 -1.2
420,774 + Echvi_0396 0.86 +1.3
420,775 - Echvi_0396 0.86 +1.0
420,775 - Echvi_0396 0.86 -0.1
420,775 - Echvi_0396 0.86 +2.5
420,775 - Echvi_0396 0.86 -0.2
420,775 - Echvi_0396 0.86 -0.8
420,776 + Echvi_0396 0.86 +0.6
420,776 + Echvi_0396 0.86 -0.8
420,776 + Echvi_0396 0.86 -0.0
420,777 - Echvi_0396 0.86 +0.9
420,777 - Echvi_0396 0.86 +0.2
420,777 - Echvi_0396 0.86 +1.8
420,824 + +1.0
420,842 - +0.2
420,863 + +1.2
420,863 + +0.0
420,874 - +1.2
420,874 - -1.4
420,943 - -1.6
420,949 + +3.5
421,060 + -0.8
421,072 + -1.2
421,207 - -0.4
421,245 + -0.2
421,246 - -0.8
421,275 - Echvi_0397 0.12 -1.4
421,322 - Echvi_0397 0.15 +1.2
421,485 + Echvi_0397 0.27 +0.3
421,557 + Echvi_0397 0.33 -0.6
421,561 + Echvi_0397 0.33 +1.2
421,583 + Echvi_0397 0.35 +1.9
421,583 + Echvi_0397 0.35 +1.2
421,584 - Echvi_0397 0.35 -1.4
421,593 + Echvi_0397 0.35 -0.4
421,594 - Echvi_0397 0.35 +1.1
421,608 - Echvi_0397 0.36 +0.7
421,668 + Echvi_0397 0.41 +1.7
421,668 + Echvi_0397 0.41 +0.1
421,668 + Echvi_0397 0.41 +0.2
421,669 - Echvi_0397 0.41 -1.7
421,669 - Echvi_0397 0.41 +0.2
421,691 - Echvi_0397 0.42 +1.0
421,736 + Echvi_0397 0.46 +0.1
421,772 - Echvi_0397 0.48 +1.3
421,772 - Echvi_0397 0.48 -0.0
421,772 - Echvi_0397 0.48 +0.4
421,772 - Echvi_0397 0.48 +2.0
421,838 + Echvi_0397 0.53 +1.9
421,901 + Echvi_0397 0.58 +2.9
421,901 + Echvi_0397 0.58 +1.4

Or see this region's nucleotide sequence