Experiment: m.b. syringaldehyde 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2262 and B158DRAFT_2263 are separated by 19 nucleotides B158DRAFT_2263 and B158DRAFT_2264 are separated by 54 nucleotides B158DRAFT_2264 and B158DRAFT_2265 are separated by 104 nucleotides
B158DRAFT_2262: B158DRAFT_2262 - 16S rRNA processing protein RimM, at 425,877 to 426,398
_2262
B158DRAFT_2263: B158DRAFT_2263 - tRNA (guanine-N1)-methyltransferase, at 426,418 to 427,185
_2263
B158DRAFT_2264: B158DRAFT_2264 - ribosomal protein L19, bacterial type, at 427,240 to 427,596
_2264
B158DRAFT_2265: B158DRAFT_2265 - tyrosine recombinase XerD, at 427,701 to 428,588
_2265
Position (kb) 427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 427.736 kb on + strand at 427.744 kb on - strand at 427.744 kb on - strand at 427.744 kb on - strand at 427.754 kb on - strand at 427.759 kb on - strand at 427.759 kb on - strand at 427.989 kb on - strand, within B158DRAFT_2265 at 428.053 kb on - strand, within B158DRAFT_2265 at 428.082 kb on + strand, within B158DRAFT_2265 at 428.138 kb on - strand, within B158DRAFT_2265 at 428.187 kb on + strand, within B158DRAFT_2265 at 428.187 kb on + strand, within B158DRAFT_2265 at 428.210 kb on + strand, within B158DRAFT_2265 at 428.218 kb on - strand, within B158DRAFT_2265 at 428.218 kb on - strand, within B158DRAFT_2265 at 428.232 kb on + strand, within B158DRAFT_2265 at 428.239 kb on - strand, within B158DRAFT_2265 at 428.262 kb on + strand, within B158DRAFT_2265 at 428.263 kb on - strand, within B158DRAFT_2265 at 428.265 kb on - strand, within B158DRAFT_2265 at 428.275 kb on - strand, within B158DRAFT_2265 at 428.277 kb on - strand, within B158DRAFT_2265 at 428.282 kb on - strand, within B158DRAFT_2265 at 428.289 kb on + strand, within B158DRAFT_2265 at 428.329 kb on + strand, within B158DRAFT_2265 at 428.352 kb on + strand, within B158DRAFT_2265 at 428.365 kb on - strand, within B158DRAFT_2265 at 428.418 kb on + strand, within B158DRAFT_2265 at 428.426 kb on - strand, within B158DRAFT_2265 at 428.453 kb on + strand, within B158DRAFT_2265 at 428.453 kb on + strand, within B158DRAFT_2265 at 428.471 kb on + strand, within B158DRAFT_2265 at 428.471 kb on + strand, within B158DRAFT_2265 at 428.471 kb on + strand, within B158DRAFT_2265 at 428.471 kb on + strand, within B158DRAFT_2265 at 428.471 kb on + strand, within B158DRAFT_2265 at 428.479 kb on - strand, within B158DRAFT_2265 at 428.479 kb on - strand, within B158DRAFT_2265 at 428.479 kb on - strand, within B158DRAFT_2265 at 428.479 kb on - strand, within B158DRAFT_2265 at 428.479 kb on - strand, within B158DRAFT_2265 at 428.490 kb on - strand, within B158DRAFT_2265 at 428.522 kb on + strand at 428.522 kb on + strand at 428.522 kb on + strand at 428.522 kb on + strand at 428.522 kb on + strand at 428.530 kb on - strand at 428.530 kb on - strand at 428.530 kb on - strand at 428.530 kb on - strand at 428.530 kb on - strand at 428.530 kb on - strand at 428.530 kb on - strand at 428.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM remove 427,736 + -0.7 427,744 - -1.4 427,744 - -1.1 427,744 - -0.6 427,754 - -1.8 427,759 - -2.3 427,759 - -1.2 427,989 - B158DRAFT_2265 0.32 -0.6 428,053 - B158DRAFT_2265 0.40 -1.4 428,082 + B158DRAFT_2265 0.43 -0.5 428,138 - B158DRAFT_2265 0.49 -0.9 428,187 + B158DRAFT_2265 0.55 -2.0 428,187 + B158DRAFT_2265 0.55 -0.5 428,210 + B158DRAFT_2265 0.57 -0.2 428,218 - B158DRAFT_2265 0.58 -0.9 428,218 - B158DRAFT_2265 0.58 -1.8 428,232 + B158DRAFT_2265 0.60 -1.3 428,239 - B158DRAFT_2265 0.61 -0.5 428,262 + B158DRAFT_2265 0.63 -0.9 428,263 - B158DRAFT_2265 0.63 -1.3 428,265 - B158DRAFT_2265 0.64 +0.7 428,275 - B158DRAFT_2265 0.65 -0.1 428,277 - B158DRAFT_2265 0.65 -0.9 428,282 - B158DRAFT_2265 0.65 -1.5 428,289 + B158DRAFT_2265 0.66 -0.8 428,329 + B158DRAFT_2265 0.71 -0.4 428,352 + B158DRAFT_2265 0.73 -0.7 428,365 - B158DRAFT_2265 0.75 -0.5 428,418 + B158DRAFT_2265 0.81 -3.3 428,426 - B158DRAFT_2265 0.82 -1.5 428,453 + B158DRAFT_2265 0.85 -1.4 428,453 + B158DRAFT_2265 0.85 -1.5 428,471 + B158DRAFT_2265 0.87 -1.0 428,471 + B158DRAFT_2265 0.87 -0.9 428,471 + B158DRAFT_2265 0.87 -1.0 428,471 + B158DRAFT_2265 0.87 -0.9 428,471 + B158DRAFT_2265 0.87 -0.7 428,479 - B158DRAFT_2265 0.88 -1.0 428,479 - B158DRAFT_2265 0.88 -0.8 428,479 - B158DRAFT_2265 0.88 -0.5 428,479 - B158DRAFT_2265 0.88 -0.5 428,479 - B158DRAFT_2265 0.88 -1.0 428,490 - B158DRAFT_2265 0.89 -1.7 428,522 + -1.0 428,522 + -1.1 428,522 + -1.2 428,522 + -0.8 428,522 + -1.5 428,530 - -1.2 428,530 - -1.6 428,530 - -1.2 428,530 - -1.5 428,530 - -1.0 428,530 - -0.9 428,530 - -1.1 428,556 + -3.0
Or see this region's nucleotide sequence