Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1574

Experiment: m.b. syringaldehyde 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1573 and B158DRAFT_1574 are separated by 44 nucleotidesB158DRAFT_1574 and B158DRAFT_1575 are separated by 27 nucleotidesB158DRAFT_1575 and B158DRAFT_1576 are separated by 2 nucleotidesB158DRAFT_1576 and B158DRAFT_1577 are separated by 167 nucleotides B158DRAFT_1573: B158DRAFT_1573 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 1,632,030 to 1,633,688 _1573 B158DRAFT_1574: B158DRAFT_1574 - ribonuclease D, at 1,633,733 to 1,634,887 _1574 B158DRAFT_1575: B158DRAFT_1575 - Uncharacterized protein conserved in bacteria, at 1,634,915 to 1,635,181 _1575 B158DRAFT_1576: B158DRAFT_1576 - Uncharacterized conserved protein, at 1,635,184 to 1,635,633 _1576 B158DRAFT_1577: B158DRAFT_1577 - tRNA_Asp_GTC, at 1,635,801 to 1,635,877 _1577 Position (kb) 1633 1634 1635Strain fitness (log2 ratio) -2 -1 0 1 2at 1632.748 kb on - strand, within B158DRAFT_1573at 1632.844 kb on + strand, within B158DRAFT_1573at 1632.933 kb on + strand, within B158DRAFT_1573at 1632.968 kb on + strand, within B158DRAFT_1573at 1632.971 kb on - strand, within B158DRAFT_1573at 1632.976 kb on - strand, within B158DRAFT_1573at 1632.976 kb on - strand, within B158DRAFT_1573at 1633.036 kb on - strand, within B158DRAFT_1573at 1633.036 kb on - strand, within B158DRAFT_1573at 1633.038 kb on + strand, within B158DRAFT_1573at 1633.038 kb on + strand, within B158DRAFT_1573at 1633.038 kb on + strand, within B158DRAFT_1573at 1633.038 kb on - strand, within B158DRAFT_1573at 1633.038 kb on - strand, within B158DRAFT_1573at 1633.038 kb on - strand, within B158DRAFT_1573at 1633.096 kb on + strand, within B158DRAFT_1573at 1633.096 kb on + strand, within B158DRAFT_1573at 1633.096 kb on + strand, within B158DRAFT_1573at 1633.096 kb on - strand, within B158DRAFT_1573at 1633.164 kb on + strand, within B158DRAFT_1573at 1633.214 kb on + strand, within B158DRAFT_1573at 1633.247 kb on + strand, within B158DRAFT_1573at 1633.276 kb on - strand, within B158DRAFT_1573at 1633.432 kb on - strand, within B158DRAFT_1573at 1633.569 kb on - strandat 1633.799 kb on - strandat 1633.827 kb on - strandat 1633.832 kb on - strandat 1633.838 kb on - strandat 1634.008 kb on - strand, within B158DRAFT_1574at 1634.074 kb on - strand, within B158DRAFT_1574at 1634.100 kb on + strand, within B158DRAFT_1574at 1634.100 kb on + strand, within B158DRAFT_1574at 1634.100 kb on + strand, within B158DRAFT_1574at 1634.108 kb on - strand, within B158DRAFT_1574at 1634.108 kb on - strand, within B158DRAFT_1574at 1634.156 kb on - strand, within B158DRAFT_1574at 1634.170 kb on + strand, within B158DRAFT_1574at 1634.170 kb on + strand, within B158DRAFT_1574at 1634.170 kb on + strand, within B158DRAFT_1574at 1634.178 kb on - strand, within B158DRAFT_1574at 1634.178 kb on - strand, within B158DRAFT_1574at 1634.178 kb on - strand, within B158DRAFT_1574at 1634.225 kb on + strand, within B158DRAFT_1574at 1634.234 kb on + strand, within B158DRAFT_1574at 1634.276 kb on - strand, within B158DRAFT_1574at 1634.391 kb on + strand, within B158DRAFT_1574at 1634.399 kb on - strand, within B158DRAFT_1574at 1634.562 kb on - strand, within B158DRAFT_1574at 1634.632 kb on - strand, within B158DRAFT_1574at 1634.789 kb on + strandat 1634.789 kb on + strandat 1634.797 kb on - strandat 1634.797 kb on - strandat 1634.842 kb on - strandat 1634.856 kb on + strandat 1635.003 kb on + strand, within B158DRAFT_1575at 1635.008 kb on + strand, within B158DRAFT_1575at 1635.011 kb on - strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.024 kb on + strand, within B158DRAFT_1575at 1635.024 kb on + strand, within B158DRAFT_1575at 1635.032 kb on - strand, within B158DRAFT_1575at 1635.032 kb on - strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.074 kb on - strand, within B158DRAFT_1575at 1635.074 kb on - strand, within B158DRAFT_1575at 1635.074 kb on - strand, within B158DRAFT_1575at 1635.116 kb on + strand, within B158DRAFT_1575at 1635.220 kb on + strandat 1635.227 kb on + strandat 1635.267 kb on + strand, within B158DRAFT_1576at 1635.275 kb on + strand, within B158DRAFT_1576at 1635.342 kb on + strand, within B158DRAFT_1576at 1635.342 kb on - strand, within B158DRAFT_1576at 1635.344 kb on + strand, within B158DRAFT_1576at 1635.344 kb on + strand, within B158DRAFT_1576at 1635.352 kb on - strand, within B158DRAFT_1576at 1635.398 kb on + strand, within B158DRAFT_1576at 1635.398 kb on + strand, within B158DRAFT_1576at 1635.398 kb on + strand, within B158DRAFT_1576at 1635.406 kb on - strand, within B158DRAFT_1576at 1635.406 kb on - strand, within B158DRAFT_1576at 1635.419 kb on + strand, within B158DRAFT_1576at 1635.427 kb on - strand, within B158DRAFT_1576at 1635.427 kb on - strand, within B158DRAFT_1576at 1635.435 kb on - strand, within B158DRAFT_1576at 1635.447 kb on + strand, within B158DRAFT_1576at 1635.447 kb on + strand, within B158DRAFT_1576at 1635.447 kb on + strand, within B158DRAFT_1576at 1635.450 kb on - strand, within B158DRAFT_1576at 1635.455 kb on - strand, within B158DRAFT_1576at 1635.455 kb on - strand, within B158DRAFT_1576at 1635.455 kb on - strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.476 kb on + strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.484 kb on - strand, within B158DRAFT_1576at 1635.484 kb on - strand, within B158DRAFT_1576at 1635.547 kb on + strand, within B158DRAFT_1576at 1635.826 kb on - strand, within B158DRAFT_1577at 1635.826 kb on - strand, within B158DRAFT_1577at 1635.853 kb on + strand, within B158DRAFT_1577at 1635.864 kb on + strand, within B158DRAFT_1577

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM
remove
1,632,748 - B158DRAFT_1573 0.43 +0.7
1,632,844 + B158DRAFT_1573 0.49 -0.2
1,632,933 + B158DRAFT_1573 0.54 +0.1
1,632,968 + B158DRAFT_1573 0.57 +0.5
1,632,971 - B158DRAFT_1573 0.57 +0.3
1,632,976 - B158DRAFT_1573 0.57 +0.5
1,632,976 - B158DRAFT_1573 0.57 +0.3
1,633,036 - B158DRAFT_1573 0.61 +1.0
1,633,036 - B158DRAFT_1573 0.61 +0.1
1,633,038 + B158DRAFT_1573 0.61 +0.0
1,633,038 + B158DRAFT_1573 0.61 -0.2
1,633,038 + B158DRAFT_1573 0.61 -0.2
1,633,038 - B158DRAFT_1573 0.61 +0.4
1,633,038 - B158DRAFT_1573 0.61 -0.1
1,633,038 - B158DRAFT_1573 0.61 +0.2
1,633,096 + B158DRAFT_1573 0.64 -0.4
1,633,096 + B158DRAFT_1573 0.64 +0.4
1,633,096 + B158DRAFT_1573 0.64 -0.2
1,633,096 - B158DRAFT_1573 0.64 +0.0
1,633,164 + B158DRAFT_1573 0.68 -0.5
1,633,214 + B158DRAFT_1573 0.71 -0.3
1,633,247 + B158DRAFT_1573 0.73 -0.6
1,633,276 - B158DRAFT_1573 0.75 +0.1
1,633,432 - B158DRAFT_1573 0.85 -0.3
1,633,569 - +0.4
1,633,799 - +0.5
1,633,827 - +0.2
1,633,832 - +0.4
1,633,838 - +0.3
1,634,008 - B158DRAFT_1574 0.24 +0.5
1,634,074 - B158DRAFT_1574 0.30 +0.1
1,634,100 + B158DRAFT_1574 0.32 +0.7
1,634,100 + B158DRAFT_1574 0.32 +0.6
1,634,100 + B158DRAFT_1574 0.32 +0.6
1,634,108 - B158DRAFT_1574 0.32 +0.3
1,634,108 - B158DRAFT_1574 0.32 +0.2
1,634,156 - B158DRAFT_1574 0.37 +0.4
1,634,170 + B158DRAFT_1574 0.38 +0.4
1,634,170 + B158DRAFT_1574 0.38 +0.4
1,634,170 + B158DRAFT_1574 0.38 +0.2
1,634,178 - B158DRAFT_1574 0.39 +0.2
1,634,178 - B158DRAFT_1574 0.39 +1.1
1,634,178 - B158DRAFT_1574 0.39 +0.4
1,634,225 + B158DRAFT_1574 0.43 +0.6
1,634,234 + B158DRAFT_1574 0.43 +0.6
1,634,276 - B158DRAFT_1574 0.47 +0.3
1,634,391 + B158DRAFT_1574 0.57 +0.3
1,634,399 - B158DRAFT_1574 0.58 +0.5
1,634,562 - B158DRAFT_1574 0.72 +0.7
1,634,632 - B158DRAFT_1574 0.78 +0.7
1,634,789 + +0.4
1,634,789 + +0.5
1,634,797 - +0.6
1,634,797 - +0.7
1,634,842 - +0.3
1,634,856 + +0.5
1,635,003 + B158DRAFT_1575 0.33 +0.8
1,635,008 + B158DRAFT_1575 0.35 +0.0
1,635,011 - B158DRAFT_1575 0.36 -0.1
1,635,013 + B158DRAFT_1575 0.37 +0.4
1,635,013 + B158DRAFT_1575 0.37 +0.1
1,635,013 + B158DRAFT_1575 0.37 -0.2
1,635,013 + B158DRAFT_1575 0.37 -0.3
1,635,013 + B158DRAFT_1575 0.37 +0.2
1,635,013 + B158DRAFT_1575 0.37 -0.5
1,635,013 + B158DRAFT_1575 0.37 -0.8
1,635,013 + B158DRAFT_1575 0.37 +0.0
1,635,024 + B158DRAFT_1575 0.41 -0.3
1,635,024 + B158DRAFT_1575 0.41 -0.7
1,635,032 - B158DRAFT_1575 0.44 -0.1
1,635,032 - B158DRAFT_1575 0.44 -0.9
1,635,066 + B158DRAFT_1575 0.57 -0.1
1,635,066 + B158DRAFT_1575 0.57 +0.5
1,635,066 + B158DRAFT_1575 0.57 +0.1
1,635,066 + B158DRAFT_1575 0.57 -0.3
1,635,074 - B158DRAFT_1575 0.60 -0.1
1,635,074 - B158DRAFT_1575 0.60 -0.2
1,635,074 - B158DRAFT_1575 0.60 -0.0
1,635,116 + B158DRAFT_1575 0.75 -0.4
1,635,220 + -0.1
1,635,227 + -0.2
1,635,267 + B158DRAFT_1576 0.18 -0.8
1,635,275 + B158DRAFT_1576 0.20 +0.4
1,635,342 + B158DRAFT_1576 0.35 -0.2
1,635,342 - B158DRAFT_1576 0.35 -0.7
1,635,344 + B158DRAFT_1576 0.36 +0.1
1,635,344 + B158DRAFT_1576 0.36 +0.1
1,635,352 - B158DRAFT_1576 0.37 -0.3
1,635,398 + B158DRAFT_1576 0.48 -0.1
1,635,398 + B158DRAFT_1576 0.48 +1.6
1,635,398 + B158DRAFT_1576 0.48 +0.2
1,635,406 - B158DRAFT_1576 0.49 -0.3
1,635,406 - B158DRAFT_1576 0.49 -0.1
1,635,419 + B158DRAFT_1576 0.52 -1.0
1,635,427 - B158DRAFT_1576 0.54 -1.1
1,635,427 - B158DRAFT_1576 0.54 -0.1
1,635,435 - B158DRAFT_1576 0.56 -0.3
1,635,447 + B158DRAFT_1576 0.58 +0.2
1,635,447 + B158DRAFT_1576 0.58 -0.2
1,635,447 + B158DRAFT_1576 0.58 -0.1
1,635,450 - B158DRAFT_1576 0.59 +0.1
1,635,455 - B158DRAFT_1576 0.60 -0.5
1,635,455 - B158DRAFT_1576 0.60 -0.3
1,635,455 - B158DRAFT_1576 0.60 +0.3
1,635,474 + B158DRAFT_1576 0.64 -0.1
1,635,474 + B158DRAFT_1576 0.64 +0.3
1,635,474 + B158DRAFT_1576 0.64 -0.3
1,635,474 + B158DRAFT_1576 0.64 -0.1
1,635,474 + B158DRAFT_1576 0.64 -0.1
1,635,474 + B158DRAFT_1576 0.64 -0.1
1,635,474 + B158DRAFT_1576 0.64 -0.7
1,635,476 + B158DRAFT_1576 0.65 -0.2
1,635,482 - B158DRAFT_1576 0.66 -0.9
1,635,482 - B158DRAFT_1576 0.66 +0.2
1,635,482 - B158DRAFT_1576 0.66 +0.2
1,635,482 - B158DRAFT_1576 0.66 +0.1
1,635,482 - B158DRAFT_1576 0.66 +2.2
1,635,482 - B158DRAFT_1576 0.66 -0.5
1,635,482 - B158DRAFT_1576 0.66 +0.1
1,635,482 - B158DRAFT_1576 0.66 -0.3
1,635,484 - B158DRAFT_1576 0.67 -0.8
1,635,484 - B158DRAFT_1576 0.67 -0.0
1,635,547 + B158DRAFT_1576 0.81 +0.1
1,635,826 - B158DRAFT_1577 0.32 -2.3
1,635,826 - B158DRAFT_1577 0.32 -1.5
1,635,853 + B158DRAFT_1577 0.68 -1.4
1,635,864 + B158DRAFT_1577 0.82 -0.9

Or see this region's nucleotide sequence