Experiment: m.b. syringaldehyde 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1490 and B158DRAFT_1491 are separated by 37 nucleotides B158DRAFT_1491 and B158DRAFT_1492 overlap by 1 nucleotides B158DRAFT_1492 and B158DRAFT_1493 are separated by 238 nucleotides B158DRAFT_1493 and B158DRAFT_1494 are separated by 220 nucleotides
B158DRAFT_1490: B158DRAFT_1490 - diguanylate cyclase (GGDEF) domain, at 1,544,677 to 1,548,054
_1490
B158DRAFT_1491: B158DRAFT_1491 - hypothetical protein, at 1,548,092 to 1,548,880
_1491
B158DRAFT_1492: B158DRAFT_1492 - FAD/FMN-containing dehydrogenases, at 1,548,880 to 1,550,271
_1492
B158DRAFT_1493: B158DRAFT_1493 - tRNA_Val_TAC, at 1,550,510 to 1,550,585
_1493
B158DRAFT_1494: B158DRAFT_1494 - glutamyl-tRNA synthetase (EC 6.1.1.17), at 1,550,806 to 1,552,224
_1494
Position (kb)
1548
1549
1550
1551 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1548.042 kb on + strand at 1548.085 kb on + strand at 1548.093 kb on - strand at 1548.095 kb on + strand at 1548.103 kb on - strand at 1548.118 kb on - strand at 1548.130 kb on - strand at 1548.181 kb on + strand, within B158DRAFT_1491 at 1548.208 kb on + strand, within B158DRAFT_1491 at 1548.234 kb on - strand, within B158DRAFT_1491 at 1548.234 kb on - strand, within B158DRAFT_1491 at 1548.244 kb on + strand, within B158DRAFT_1491 at 1548.252 kb on - strand, within B158DRAFT_1491 at 1548.257 kb on - strand, within B158DRAFT_1491 at 1548.288 kb on - strand, within B158DRAFT_1491 at 1548.382 kb on - strand, within B158DRAFT_1491 at 1548.583 kb on - strand, within B158DRAFT_1491 at 1548.588 kb on - strand, within B158DRAFT_1491 at 1548.835 kb on + strand at 1548.862 kb on + strand at 1548.862 kb on + strand at 1548.911 kb on + strand at 1548.918 kb on + strand at 1548.918 kb on + strand at 1548.926 kb on - strand at 1548.926 kb on - strand at 1548.926 kb on - strand at 1548.926 kb on - strand at 1548.926 kb on - strand at 1548.926 kb on - strand at 1548.926 kb on - strand at 1549.152 kb on + strand, within B158DRAFT_1492 at 1549.160 kb on - strand, within B158DRAFT_1492 at 1549.160 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.186 kb on - strand, within B158DRAFT_1492 at 1549.219 kb on - strand, within B158DRAFT_1492 at 1549.294 kb on - strand, within B158DRAFT_1492 at 1549.313 kb on + strand, within B158DRAFT_1492 at 1549.329 kb on - strand, within B158DRAFT_1492 at 1549.408 kb on - strand, within B158DRAFT_1492 at 1549.456 kb on + strand, within B158DRAFT_1492 at 1549.456 kb on + strand, within B158DRAFT_1492 at 1549.466 kb on - strand, within B158DRAFT_1492 at 1549.466 kb on - strand, within B158DRAFT_1492 at 1549.536 kb on + strand, within B158DRAFT_1492 at 1549.536 kb on + strand, within B158DRAFT_1492 at 1549.544 kb on - strand, within B158DRAFT_1492 at 1549.544 kb on - strand, within B158DRAFT_1492 at 1549.544 kb on - strand, within B158DRAFT_1492 at 1549.544 kb on - strand, within B158DRAFT_1492 at 1549.544 kb on - strand, within B158DRAFT_1492 at 1549.563 kb on - strand, within B158DRAFT_1492 at 1549.577 kb on - strand, within B158DRAFT_1492 at 1549.608 kb on - strand, within B158DRAFT_1492 at 1549.668 kb on + strand, within B158DRAFT_1492 at 1549.706 kb on - strand, within B158DRAFT_1492 at 1549.745 kb on - strand, within B158DRAFT_1492 at 1549.769 kb on + strand, within B158DRAFT_1492 at 1549.774 kb on + strand, within B158DRAFT_1492 at 1549.775 kb on - strand, within B158DRAFT_1492 at 1549.775 kb on - strand, within B158DRAFT_1492 at 1549.775 kb on - strand, within B158DRAFT_1492 at 1549.776 kb on + strand, within B158DRAFT_1492 at 1549.777 kb on - strand, within B158DRAFT_1492 at 1549.782 kb on - strand, within B158DRAFT_1492 at 1549.792 kb on + strand, within B158DRAFT_1492 at 1549.792 kb on + strand, within B158DRAFT_1492 at 1549.800 kb on - strand, within B158DRAFT_1492 at 1549.800 kb on - strand, within B158DRAFT_1492 at 1549.800 kb on - strand, within B158DRAFT_1492 at 1549.800 kb on - strand, within B158DRAFT_1492 at 1549.800 kb on - strand, within B158DRAFT_1492 at 1549.800 kb on - strand, within B158DRAFT_1492 at 1549.854 kb on + strand, within B158DRAFT_1492 at 1549.854 kb on + strand, within B158DRAFT_1492 at 1549.857 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.862 kb on - strand, within B158DRAFT_1492 at 1549.871 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.883 kb on + strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.891 kb on - strand, within B158DRAFT_1492 at 1549.902 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.041 kb on + strand, within B158DRAFT_1492 at 1550.049 kb on - strand, within B158DRAFT_1492 at 1550.049 kb on - strand, within B158DRAFT_1492 at 1550.049 kb on - strand, within B158DRAFT_1492 at 1550.070 kb on - strand, within B158DRAFT_1492 at 1550.171 kb on + strand at 1550.171 kb on + strand at 1550.179 kb on - strand at 1550.179 kb on - strand at 1550.179 kb on - strand at 1550.179 kb on - strand at 1550.222 kb on - strand at 1550.325 kb on - strand at 1550.352 kb on + strand at 1550.395 kb on - strand at 1550.534 kb on - strand, within B158DRAFT_1493 at 1550.534 kb on - strand, within B158DRAFT_1493 at 1550.541 kb on - strand, within B158DRAFT_1493 at 1550.554 kb on + strand, within B158DRAFT_1493 at 1550.618 kb on + strand at 1550.626 kb on - strand at 1550.635 kb on - strand at 1550.640 kb on + strand at 1550.648 kb on - strand at 1550.688 kb on + strand at 1550.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM remove 1,548,042 + -0.0 1,548,085 + -0.0 1,548,093 - -0.3 1,548,095 + -0.4 1,548,103 - -0.6 1,548,118 - -0.4 1,548,130 - -1.4 1,548,181 + B158DRAFT_1491 0.11 -1.1 1,548,208 + B158DRAFT_1491 0.15 -1.8 1,548,234 - B158DRAFT_1491 0.18 -0.8 1,548,234 - B158DRAFT_1491 0.18 -0.8 1,548,244 + B158DRAFT_1491 0.19 -0.8 1,548,252 - B158DRAFT_1491 0.20 -2.2 1,548,257 - B158DRAFT_1491 0.21 -2.5 1,548,288 - B158DRAFT_1491 0.25 -0.1 1,548,382 - B158DRAFT_1491 0.37 -1.6 1,548,583 - B158DRAFT_1491 0.62 -0.9 1,548,588 - B158DRAFT_1491 0.63 -1.1 1,548,835 + -0.9 1,548,862 + -1.9 1,548,862 + -1.7 1,548,911 + -1.1 1,548,918 + -1.5 1,548,918 + -1.5 1,548,926 - -1.0 1,548,926 - +0.2 1,548,926 - -0.6 1,548,926 - -0.9 1,548,926 - -0.4 1,548,926 - -0.6 1,548,926 - +0.5 1,549,152 + B158DRAFT_1492 0.20 -0.7 1,549,160 - B158DRAFT_1492 0.20 +0.0 1,549,160 - B158DRAFT_1492 0.20 -0.7 1,549,186 - B158DRAFT_1492 0.22 -0.7 1,549,186 - B158DRAFT_1492 0.22 -1.2 1,549,186 - B158DRAFT_1492 0.22 -0.9 1,549,186 - B158DRAFT_1492 0.22 -0.1 1,549,186 - B158DRAFT_1492 0.22 -1.1 1,549,186 - B158DRAFT_1492 0.22 -0.5 1,549,186 - B158DRAFT_1492 0.22 -0.2 1,549,186 - B158DRAFT_1492 0.22 -0.1 1,549,186 - B158DRAFT_1492 0.22 -0.3 1,549,219 - B158DRAFT_1492 0.24 -0.8 1,549,294 - B158DRAFT_1492 0.30 -0.0 1,549,313 + B158DRAFT_1492 0.31 -0.6 1,549,329 - B158DRAFT_1492 0.32 -0.4 1,549,408 - B158DRAFT_1492 0.38 -0.6 1,549,456 + B158DRAFT_1492 0.41 -2.0 1,549,456 + B158DRAFT_1492 0.41 -1.2 1,549,466 - B158DRAFT_1492 0.42 -0.5 1,549,466 - B158DRAFT_1492 0.42 +0.1 1,549,536 + B158DRAFT_1492 0.47 -3.4 1,549,536 + B158DRAFT_1492 0.47 -0.8 1,549,544 - B158DRAFT_1492 0.48 -0.9 1,549,544 - B158DRAFT_1492 0.48 -0.4 1,549,544 - B158DRAFT_1492 0.48 -0.8 1,549,544 - B158DRAFT_1492 0.48 -0.7 1,549,544 - B158DRAFT_1492 0.48 -0.8 1,549,563 - B158DRAFT_1492 0.49 +0.0 1,549,577 - B158DRAFT_1492 0.50 -1.1 1,549,608 - B158DRAFT_1492 0.52 -0.5 1,549,668 + B158DRAFT_1492 0.57 -2.8 1,549,706 - B158DRAFT_1492 0.59 -0.7 1,549,745 - B158DRAFT_1492 0.62 -0.1 1,549,769 + B158DRAFT_1492 0.64 -1.6 1,549,774 + B158DRAFT_1492 0.64 -1.1 1,549,775 - B158DRAFT_1492 0.64 -0.5 1,549,775 - B158DRAFT_1492 0.64 -0.5 1,549,775 - B158DRAFT_1492 0.64 -0.5 1,549,776 + B158DRAFT_1492 0.64 -2.6 1,549,777 - B158DRAFT_1492 0.64 -0.3 1,549,782 - B158DRAFT_1492 0.65 -0.2 1,549,792 + B158DRAFT_1492 0.66 -0.9 1,549,792 + B158DRAFT_1492 0.66 -0.2 1,549,800 - B158DRAFT_1492 0.66 +0.5 1,549,800 - B158DRAFT_1492 0.66 -0.6 1,549,800 - B158DRAFT_1492 0.66 -0.6 1,549,800 - B158DRAFT_1492 0.66 -0.6 1,549,800 - B158DRAFT_1492 0.66 -0.5 1,549,800 - B158DRAFT_1492 0.66 +0.3 1,549,854 + B158DRAFT_1492 0.70 -0.7 1,549,854 + B158DRAFT_1492 0.70 -1.4 1,549,857 - B158DRAFT_1492 0.70 -1.7 1,549,862 - B158DRAFT_1492 0.71 -0.5 1,549,862 - B158DRAFT_1492 0.71 -0.0 1,549,862 - B158DRAFT_1492 0.71 +0.6 1,549,862 - B158DRAFT_1492 0.71 -0.7 1,549,862 - B158DRAFT_1492 0.71 -1.4 1,549,871 + B158DRAFT_1492 0.71 -1.3 1,549,883 + B158DRAFT_1492 0.72 -2.6 1,549,883 + B158DRAFT_1492 0.72 -1.3 1,549,883 + B158DRAFT_1492 0.72 +0.1 1,549,883 + B158DRAFT_1492 0.72 -1.9 1,549,883 + B158DRAFT_1492 0.72 +0.1 1,549,883 + B158DRAFT_1492 0.72 -1.9 1,549,891 - B158DRAFT_1492 0.73 +1.0 1,549,891 - B158DRAFT_1492 0.73 +2.2 1,549,891 - B158DRAFT_1492 0.73 -0.8 1,549,891 - B158DRAFT_1492 0.73 +0.0 1,549,891 - B158DRAFT_1492 0.73 -0.7 1,549,891 - B158DRAFT_1492 0.73 -0.7 1,549,902 + B158DRAFT_1492 0.73 -1.7 1,550,041 + B158DRAFT_1492 0.83 -1.4 1,550,041 + B158DRAFT_1492 0.83 -1.3 1,550,041 + B158DRAFT_1492 0.83 -3.3 1,550,041 + B158DRAFT_1492 0.83 -1.1 1,550,041 + B158DRAFT_1492 0.83 -1.5 1,550,041 + B158DRAFT_1492 0.83 -1.2 1,550,049 - B158DRAFT_1492 0.84 -1.4 1,550,049 - B158DRAFT_1492 0.84 +0.1 1,550,049 - B158DRAFT_1492 0.84 -1.3 1,550,070 - B158DRAFT_1492 0.85 -0.5 1,550,171 + -1.1 1,550,171 + +0.2 1,550,179 - -2.4 1,550,179 - -0.4 1,550,179 - -0.4 1,550,179 - -0.4 1,550,222 - -0.0 1,550,325 - -0.6 1,550,352 + +0.1 1,550,395 - -0.4 1,550,534 - B158DRAFT_1493 0.32 +0.1 1,550,534 - B158DRAFT_1493 0.32 -0.6 1,550,541 - B158DRAFT_1493 0.41 -1.0 1,550,554 + B158DRAFT_1493 0.58 +0.3 1,550,618 + +0.1 1,550,626 - -0.2 1,550,635 - +0.3 1,550,640 + -0.1 1,550,648 - -0.2 1,550,688 + +0.1 1,550,767 - -0.6
Or see this region's nucleotide sequence