Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_664

Experiment: A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_663 and PfGW456L13_664 are separated by 44 nucleotidesPfGW456L13_664 and PfGW456L13_665 are separated by 50 nucleotides PfGW456L13_663 - DNA gyrase subunit B (EC 5.99.1.3), at 752,492 to 754,870 _663 PfGW456L13_664 - DNA recombination and repair protein RecF, at 754,915 to 755,988 _664 PfGW456L13_665 - DNA polymerase III beta subunit (EC 2.7.7.7), at 756,039 to 757,142 _665 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1at 755.018 kb on - strandat 755.018 kb on - strandat 755.018 kb on - strandat 755.018 kb on - strandat 755.018 kb on - strandat 755.018 kb on - strandat 755.029 kb on - strand, within PfGW456L13_664at 755.029 kb on - strand, within PfGW456L13_664at 755.029 kb on - strand, within PfGW456L13_664at 755.029 kb on - strand, within PfGW456L13_664at 755.029 kb on - strand, within PfGW456L13_664at 755.029 kb on - strand, within PfGW456L13_664at 755.033 kb on - strand, within PfGW456L13_664at 755.033 kb on - strand, within PfGW456L13_664at 755.045 kb on - strand, within PfGW456L13_664at 755.118 kb on - strand, within PfGW456L13_664at 755.118 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.171 kb on - strand, within PfGW456L13_664at 755.275 kb on - strand, within PfGW456L13_664at 755.355 kb on - strand, within PfGW456L13_664at 755.355 kb on - strand, within PfGW456L13_664at 755.355 kb on - strand, within PfGW456L13_664at 755.428 kb on - strand, within PfGW456L13_664at 755.428 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.512 kb on - strand, within PfGW456L13_664at 755.763 kb on + strand, within PfGW456L13_664at 755.763 kb on + strand, within PfGW456L13_664at 755.764 kb on - strand, within PfGW456L13_664at 755.764 kb on - strand, within PfGW456L13_664at 755.775 kb on + strand, within PfGW456L13_664at 755.775 kb on + strand, within PfGW456L13_664at 755.776 kb on - strand, within PfGW456L13_664at 755.809 kb on + strand, within PfGW456L13_664at 755.809 kb on + strand, within PfGW456L13_664at 755.809 kb on + strand, within PfGW456L13_664at 755.810 kb on - strand, within PfGW456L13_664at 755.815 kb on - strand, within PfGW456L13_664at 755.832 kb on - strand, within PfGW456L13_664at 755.933 kb on + strandat 755.940 kb on + strandat 755.940 kb on + strandat 755.940 kb on + strandat 755.940 kb on + strandat 755.941 kb on - strandat 755.941 kb on - strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.011 kb on - strandat 756.011 kb on - strandat 756.011 kb on - strandat 756.011 kb on - strandat 756.020 kb on + strandat 756.020 kb on + strandat 756.020 kb on + strandat 756.020 kb on + strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.040 kb on + strandat 756.040 kb on + strandat 756.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.04 mg/ml
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755,018 - -1.4
755,018 - -1.4
755,018 - -1.5
755,018 - -0.5
755,018 - -0.2
755,018 - -0.3
755,029 - PfGW456L13_664 0.11 -1.0
755,029 - PfGW456L13_664 0.11 -0.1
755,029 - PfGW456L13_664 0.11 -0.2
755,029 - PfGW456L13_664 0.11 -0.7
755,029 - PfGW456L13_664 0.11 +0.6
755,029 - PfGW456L13_664 0.11 -1.7
755,033 - PfGW456L13_664 0.11 -0.1
755,033 - PfGW456L13_664 0.11 -0.5
755,045 - PfGW456L13_664 0.12 +0.5
755,118 - PfGW456L13_664 0.19 -2.2
755,118 - PfGW456L13_664 0.19 +0.6
755,122 - PfGW456L13_664 0.19 -0.1
755,122 - PfGW456L13_664 0.19 -0.1
755,122 - PfGW456L13_664 0.19 -0.6
755,122 - PfGW456L13_664 0.19 -0.3
755,122 - PfGW456L13_664 0.19 -0.3
755,122 - PfGW456L13_664 0.19 -0.9
755,122 - PfGW456L13_664 0.19 -0.7
755,122 - PfGW456L13_664 0.19 -0.6
755,171 - PfGW456L13_664 0.24 +0.4
755,275 - PfGW456L13_664 0.34 +0.5
755,355 - PfGW456L13_664 0.41 +1.0
755,355 - PfGW456L13_664 0.41 +0.5
755,355 - PfGW456L13_664 0.41 -0.5
755,428 - PfGW456L13_664 0.48 +0.1
755,428 - PfGW456L13_664 0.48 +0.8
755,430 - PfGW456L13_664 0.48 -0.7
755,430 - PfGW456L13_664 0.48 -0.8
755,430 - PfGW456L13_664 0.48 +0.3
755,430 - PfGW456L13_664 0.48 +0.6
755,430 - PfGW456L13_664 0.48 -1.1
755,430 - PfGW456L13_664 0.48 -0.9
755,430 - PfGW456L13_664 0.48 +0.3
755,430 - PfGW456L13_664 0.48 -0.6
755,430 - PfGW456L13_664 0.48 -1.2
755,512 - PfGW456L13_664 0.56 -2.4
755,763 + PfGW456L13_664 0.79 -0.8
755,763 + PfGW456L13_664 0.79 -0.2
755,764 - PfGW456L13_664 0.79 +0.4
755,764 - PfGW456L13_664 0.79 +1.1
755,775 + PfGW456L13_664 0.80 -0.6
755,775 + PfGW456L13_664 0.80 -0.3
755,776 - PfGW456L13_664 0.80 -0.5
755,809 + PfGW456L13_664 0.83 -1.6
755,809 + PfGW456L13_664 0.83 -0.1
755,809 + PfGW456L13_664 0.83 -0.8
755,810 - PfGW456L13_664 0.83 -1.1
755,815 - PfGW456L13_664 0.84 -1.2
755,832 - PfGW456L13_664 0.85 -1.5
755,933 + -1.3
755,940 + -0.1
755,940 + -0.0
755,940 + -0.3
755,940 + -1.4
755,941 - +0.5
755,941 - +0.4
756,010 + -0.1
756,010 + -0.0
756,010 + +1.3
756,010 + -0.4
756,010 + -0.2
756,010 + -1.9
756,011 - +0.1
756,011 - -0.3
756,011 - +0.2
756,011 - -0.6
756,020 + +0.1
756,020 + -2.1
756,020 + -0.0
756,020 + -0.9
756,021 - +0.3
756,021 - -0.3
756,021 - +0.6
756,021 - +1.6
756,021 - +0.4
756,021 - +1.2
756,021 - +0.4
756,040 + -0.9
756,040 + -0.3
756,041 - -1.0

Or see this region's nucleotide sequence