Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2912 and PfGW456L13_2913 are separated by 154 nucleotides PfGW456L13_2913 and PfGW456L13_2914 are separated by 0 nucleotides
PfGW456L13_2912 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 3,252,303 to 3,253,370
_2912
PfGW456L13_2913 - Alcohol dehydrogenase (EC 1.1.1.1), at 3,253,525 to 3,254,508
_2913
PfGW456L13_2914 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 3,254,509 to 3,255,573
_2914
Position (kb)
3253
3254
3255 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3252.645 kb on - strand, within PfGW456L13_2912 at 3252.829 kb on + strand, within PfGW456L13_2912 at 3253.078 kb on + strand, within PfGW456L13_2912 at 3253.078 kb on + strand, within PfGW456L13_2912 at 3253.078 kb on + strand, within PfGW456L13_2912 at 3253.078 kb on + strand, within PfGW456L13_2912 at 3253.079 kb on - strand, within PfGW456L13_2912 at 3253.079 kb on - strand, within PfGW456L13_2912 at 3253.079 kb on - strand, within PfGW456L13_2912 at 3253.079 kb on - strand, within PfGW456L13_2912 at 3253.079 kb on - strand, within PfGW456L13_2912 at 3253.079 kb on - strand, within PfGW456L13_2912 at 3253.081 kb on + strand, within PfGW456L13_2912 at 3253.081 kb on + strand, within PfGW456L13_2912 at 3253.081 kb on + strand, within PfGW456L13_2912 at 3253.081 kb on + strand, within PfGW456L13_2912 at 3253.081 kb on + strand, within PfGW456L13_2912 at 3253.082 kb on - strand, within PfGW456L13_2912 at 3253.082 kb on - strand, within PfGW456L13_2912 at 3253.082 kb on - strand, within PfGW456L13_2912 at 3253.082 kb on - strand, within PfGW456L13_2912 at 3253.082 kb on - strand, within PfGW456L13_2912 at 3253.352 kb on + strand at 3253.410 kb on - strand at 3253.410 kb on - strand at 3253.410 kb on - strand at 3253.424 kb on - strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.472 kb on + strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.473 kb on - strand at 3253.479 kb on + strand at 3253.479 kb on + strand at 3253.479 kb on + strand at 3253.479 kb on + strand at 3253.480 kb on - strand at 3253.633 kb on + strand, within PfGW456L13_2913 at 3253.634 kb on - strand, within PfGW456L13_2913 at 3253.756 kb on + strand, within PfGW456L13_2913 at 3253.756 kb on + strand, within PfGW456L13_2913 at 3253.756 kb on + strand, within PfGW456L13_2913 at 3253.757 kb on - strand, within PfGW456L13_2913 at 3253.757 kb on - strand, within PfGW456L13_2913 at 3254.084 kb on - strand, within PfGW456L13_2913 at 3254.693 kb on + strand, within PfGW456L13_2914 at 3254.693 kb on + strand, within PfGW456L13_2914 at 3254.694 kb on - strand, within PfGW456L13_2914 at 3255.065 kb on + strand, within PfGW456L13_2914 at 3255.065 kb on + strand, within PfGW456L13_2914 at 3255.098 kb on + strand, within PfGW456L13_2914 at 3255.099 kb on - strand, within PfGW456L13_2914 at 3255.171 kb on - strand at 3255.455 kb on + strand, within PfGW456L13_2914 at 3255.455 kb on + strand, within PfGW456L13_2914 at 3255.456 kb on - strand, within PfGW456L13_2914 at 3255.479 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 3,252,645 - PfGW456L13_2912 0.32 +0.3 3,252,829 + PfGW456L13_2912 0.49 +0.3 3,253,078 + PfGW456L13_2912 0.73 -1.4 3,253,078 + PfGW456L13_2912 0.73 -2.1 3,253,078 + PfGW456L13_2912 0.73 -0.7 3,253,078 + PfGW456L13_2912 0.73 -0.6 3,253,079 - PfGW456L13_2912 0.73 +0.3 3,253,079 - PfGW456L13_2912 0.73 +0.6 3,253,079 - PfGW456L13_2912 0.73 -0.4 3,253,079 - PfGW456L13_2912 0.73 +0.9 3,253,079 - PfGW456L13_2912 0.73 -0.7 3,253,079 - PfGW456L13_2912 0.73 -1.0 3,253,081 + PfGW456L13_2912 0.73 +1.1 3,253,081 + PfGW456L13_2912 0.73 +0.4 3,253,081 + PfGW456L13_2912 0.73 -1.7 3,253,081 + PfGW456L13_2912 0.73 -1.2 3,253,081 + PfGW456L13_2912 0.73 -0.6 3,253,082 - PfGW456L13_2912 0.73 -1.0 3,253,082 - PfGW456L13_2912 0.73 -0.1 3,253,082 - PfGW456L13_2912 0.73 -0.7 3,253,082 - PfGW456L13_2912 0.73 +1.3 3,253,082 - PfGW456L13_2912 0.73 -0.1 3,253,352 + -0.2 3,253,410 - +0.0 3,253,410 - -0.6 3,253,410 - +0.8 3,253,424 - -0.0 3,253,472 + -0.1 3,253,472 + +0.4 3,253,472 + +0.6 3,253,472 + +0.0 3,253,472 + -0.2 3,253,472 + -1.0 3,253,472 + +0.8 3,253,472 + +0.3 3,253,472 + -0.3 3,253,472 + -0.1 3,253,472 + -0.5 3,253,472 + +0.3 3,253,472 + -0.1 3,253,472 + +0.7 3,253,472 + -0.1 3,253,472 + +0.6 3,253,472 + -1.1 3,253,472 + -1.1 3,253,472 + +0.6 3,253,473 - -0.5 3,253,473 - -0.2 3,253,473 - -0.2 3,253,473 - -0.1 3,253,473 - -0.0 3,253,473 - -0.2 3,253,473 - -1.6 3,253,473 - -0.6 3,253,473 - +0.4 3,253,473 - -0.1 3,253,473 - +0.6 3,253,473 - -0.1 3,253,473 - -1.6 3,253,473 - +2.6 3,253,479 + -0.2 3,253,479 + -0.5 3,253,479 + +1.3 3,253,479 + -0.6 3,253,480 - +1.1 3,253,633 + PfGW456L13_2913 0.11 +0.7 3,253,634 - PfGW456L13_2913 0.11 +0.0 3,253,756 + PfGW456L13_2913 0.23 +1.1 3,253,756 + PfGW456L13_2913 0.23 +0.7 3,253,756 + PfGW456L13_2913 0.23 +0.5 3,253,757 - PfGW456L13_2913 0.24 -0.2 3,253,757 - PfGW456L13_2913 0.24 +1.3 3,254,084 - PfGW456L13_2913 0.57 -0.9 3,254,693 + PfGW456L13_2914 0.17 +0.4 3,254,693 + PfGW456L13_2914 0.17 +0.4 3,254,694 - PfGW456L13_2914 0.17 +0.8 3,255,065 + PfGW456L13_2914 0.52 -1.0 3,255,065 + PfGW456L13_2914 0.52 +0.4 3,255,098 + PfGW456L13_2914 0.55 -0.4 3,255,099 - PfGW456L13_2914 0.55 +0.7 3,255,171 - -1.1 3,255,455 + PfGW456L13_2914 0.89 -0.6 3,255,455 + PfGW456L13_2914 0.89 +0.1 3,255,456 - PfGW456L13_2914 0.89 -0.8 3,255,479 + -1.1
Or see this region's nucleotide sequence