Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2913

Experiment: A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2912 and PfGW456L13_2913 are separated by 154 nucleotidesPfGW456L13_2913 and PfGW456L13_2914 are separated by 0 nucleotides PfGW456L13_2912 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 3,252,303 to 3,253,370 _2912 PfGW456L13_2913 - Alcohol dehydrogenase (EC 1.1.1.1), at 3,253,525 to 3,254,508 _2913 PfGW456L13_2914 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 3,254,509 to 3,255,573 _2914 Position (kb) 3253 3254 3255Strain fitness (log2 ratio) -2 -1 0 1 2at 3252.645 kb on - strand, within PfGW456L13_2912at 3252.829 kb on + strand, within PfGW456L13_2912at 3253.078 kb on + strand, within PfGW456L13_2912at 3253.078 kb on + strand, within PfGW456L13_2912at 3253.078 kb on + strand, within PfGW456L13_2912at 3253.078 kb on + strand, within PfGW456L13_2912at 3253.079 kb on - strand, within PfGW456L13_2912at 3253.079 kb on - strand, within PfGW456L13_2912at 3253.079 kb on - strand, within PfGW456L13_2912at 3253.079 kb on - strand, within PfGW456L13_2912at 3253.079 kb on - strand, within PfGW456L13_2912at 3253.079 kb on - strand, within PfGW456L13_2912at 3253.081 kb on + strand, within PfGW456L13_2912at 3253.081 kb on + strand, within PfGW456L13_2912at 3253.081 kb on + strand, within PfGW456L13_2912at 3253.081 kb on + strand, within PfGW456L13_2912at 3253.081 kb on + strand, within PfGW456L13_2912at 3253.082 kb on - strand, within PfGW456L13_2912at 3253.082 kb on - strand, within PfGW456L13_2912at 3253.082 kb on - strand, within PfGW456L13_2912at 3253.082 kb on - strand, within PfGW456L13_2912at 3253.082 kb on - strand, within PfGW456L13_2912at 3253.352 kb on + strandat 3253.410 kb on - strandat 3253.410 kb on - strandat 3253.410 kb on - strandat 3253.424 kb on - strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.472 kb on + strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.473 kb on - strandat 3253.479 kb on + strandat 3253.479 kb on + strandat 3253.479 kb on + strandat 3253.479 kb on + strandat 3253.480 kb on - strandat 3253.633 kb on + strand, within PfGW456L13_2913at 3253.634 kb on - strand, within PfGW456L13_2913at 3253.756 kb on + strand, within PfGW456L13_2913at 3253.756 kb on + strand, within PfGW456L13_2913at 3253.756 kb on + strand, within PfGW456L13_2913at 3253.757 kb on - strand, within PfGW456L13_2913at 3253.757 kb on - strand, within PfGW456L13_2913at 3254.084 kb on - strand, within PfGW456L13_2913at 3254.693 kb on + strand, within PfGW456L13_2914at 3254.693 kb on + strand, within PfGW456L13_2914at 3254.694 kb on - strand, within PfGW456L13_2914at 3255.065 kb on + strand, within PfGW456L13_2914at 3255.065 kb on + strand, within PfGW456L13_2914at 3255.098 kb on + strand, within PfGW456L13_2914at 3255.099 kb on - strand, within PfGW456L13_2914at 3255.171 kb on - strandat 3255.455 kb on + strand, within PfGW456L13_2914at 3255.455 kb on + strand, within PfGW456L13_2914at 3255.456 kb on - strand, within PfGW456L13_2914at 3255.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.04 mg/ml
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3,252,645 - PfGW456L13_2912 0.32 +0.3
3,252,829 + PfGW456L13_2912 0.49 +0.3
3,253,078 + PfGW456L13_2912 0.73 -1.4
3,253,078 + PfGW456L13_2912 0.73 -2.1
3,253,078 + PfGW456L13_2912 0.73 -0.7
3,253,078 + PfGW456L13_2912 0.73 -0.6
3,253,079 - PfGW456L13_2912 0.73 +0.3
3,253,079 - PfGW456L13_2912 0.73 +0.6
3,253,079 - PfGW456L13_2912 0.73 -0.4
3,253,079 - PfGW456L13_2912 0.73 +0.9
3,253,079 - PfGW456L13_2912 0.73 -0.7
3,253,079 - PfGW456L13_2912 0.73 -1.0
3,253,081 + PfGW456L13_2912 0.73 +1.1
3,253,081 + PfGW456L13_2912 0.73 +0.4
3,253,081 + PfGW456L13_2912 0.73 -1.7
3,253,081 + PfGW456L13_2912 0.73 -1.2
3,253,081 + PfGW456L13_2912 0.73 -0.6
3,253,082 - PfGW456L13_2912 0.73 -1.0
3,253,082 - PfGW456L13_2912 0.73 -0.1
3,253,082 - PfGW456L13_2912 0.73 -0.7
3,253,082 - PfGW456L13_2912 0.73 +1.3
3,253,082 - PfGW456L13_2912 0.73 -0.1
3,253,352 + -0.2
3,253,410 - +0.0
3,253,410 - -0.6
3,253,410 - +0.8
3,253,424 - -0.0
3,253,472 + -0.1
3,253,472 + +0.4
3,253,472 + +0.6
3,253,472 + +0.0
3,253,472 + -0.2
3,253,472 + -1.0
3,253,472 + +0.8
3,253,472 + +0.3
3,253,472 + -0.3
3,253,472 + -0.1
3,253,472 + -0.5
3,253,472 + +0.3
3,253,472 + -0.1
3,253,472 + +0.7
3,253,472 + -0.1
3,253,472 + +0.6
3,253,472 + -1.1
3,253,472 + -1.1
3,253,472 + +0.6
3,253,473 - -0.5
3,253,473 - -0.2
3,253,473 - -0.2
3,253,473 - -0.1
3,253,473 - -0.0
3,253,473 - -0.2
3,253,473 - -1.6
3,253,473 - -0.6
3,253,473 - +0.4
3,253,473 - -0.1
3,253,473 - +0.6
3,253,473 - -0.1
3,253,473 - -1.6
3,253,473 - +2.6
3,253,479 + -0.2
3,253,479 + -0.5
3,253,479 + +1.3
3,253,479 + -0.6
3,253,480 - +1.1
3,253,633 + PfGW456L13_2913 0.11 +0.7
3,253,634 - PfGW456L13_2913 0.11 +0.0
3,253,756 + PfGW456L13_2913 0.23 +1.1
3,253,756 + PfGW456L13_2913 0.23 +0.7
3,253,756 + PfGW456L13_2913 0.23 +0.5
3,253,757 - PfGW456L13_2913 0.24 -0.2
3,253,757 - PfGW456L13_2913 0.24 +1.3
3,254,084 - PfGW456L13_2913 0.57 -0.9
3,254,693 + PfGW456L13_2914 0.17 +0.4
3,254,693 + PfGW456L13_2914 0.17 +0.4
3,254,694 - PfGW456L13_2914 0.17 +0.8
3,255,065 + PfGW456L13_2914 0.52 -1.0
3,255,065 + PfGW456L13_2914 0.52 +0.4
3,255,098 + PfGW456L13_2914 0.55 -0.4
3,255,099 - PfGW456L13_2914 0.55 +0.7
3,255,171 - -1.1
3,255,455 + PfGW456L13_2914 0.89 -0.6
3,255,455 + PfGW456L13_2914 0.89 +0.1
3,255,456 - PfGW456L13_2914 0.89 -0.8
3,255,479 + -1.1

Or see this region's nucleotide sequence