Strain Fitness in Pseudomonas sp. RS175 around PFR28_04614

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04612 and PFR28_04613 are separated by 78 nucleotidesPFR28_04613 and PFR28_04614 overlap by 1 nucleotidesPFR28_04614 and PFR28_04615 are separated by 550 nucleotides PFR28_04612: PFR28_04612 - Methionine-binding lipoprotein MetQ, at 5,266,125 to 5,266,898 _04612 PFR28_04613: PFR28_04613 - Methionine import system permease protein MetP, at 5,266,977 to 5,267,651 _04613 PFR28_04614: PFR28_04614 - Methionine import ATP-binding protein MetN, at 5,267,651 to 5,268,658 _04614 PFR28_04615: PFR28_04615 - hypothetical protein, at 5,269,209 to 5,270,948 _04615 Position (kb) 5267 5268 5269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5266.664 kb on - strand, within PFR28_04612at 5266.713 kb on + strand, within PFR28_04612at 5266.713 kb on + strand, within PFR28_04612at 5266.713 kb on + strand, within PFR28_04612at 5266.713 kb on + strand, within PFR28_04612at 5266.713 kb on + strand, within PFR28_04612at 5266.713 kb on + strand, within PFR28_04612at 5266.713 kb on + strand, within PFR28_04612at 5266.714 kb on - strand, within PFR28_04612at 5266.714 kb on - strand, within PFR28_04612at 5266.714 kb on - strand, within PFR28_04612at 5266.714 kb on - strand, within PFR28_04612at 5266.714 kb on - strand, within PFR28_04612at 5266.714 kb on - strand, within PFR28_04612at 5266.729 kb on + strand, within PFR28_04612at 5266.729 kb on + strand, within PFR28_04612at 5266.729 kb on + strand, within PFR28_04612at 5266.729 kb on + strand, within PFR28_04612at 5266.730 kb on - strand, within PFR28_04612at 5266.730 kb on - strand, within PFR28_04612at 5266.730 kb on - strand, within PFR28_04612at 5266.730 kb on - strand, within PFR28_04612at 5266.730 kb on - strand, within PFR28_04612at 5266.730 kb on - strand, within PFR28_04612at 5266.730 kb on - strand, within PFR28_04612at 5266.758 kb on + strand, within PFR28_04612at 5266.758 kb on + strand, within PFR28_04612at 5266.758 kb on + strand, within PFR28_04612at 5266.759 kb on - strand, within PFR28_04612at 5266.759 kb on - strand, within PFR28_04612at 5266.759 kb on - strand, within PFR28_04612at 5266.887 kb on + strandat 5266.887 kb on + strandat 5266.904 kb on + strandat 5266.905 kb on - strandat 5266.905 kb on - strandat 5266.905 kb on - strandat 5266.905 kb on - strandat 5266.905 kb on - strandat 5266.963 kb on - strandat 5266.963 kb on - strandat 5266.979 kb on - strandat 5267.153 kb on - strand, within PFR28_04613at 5267.165 kb on + strand, within PFR28_04613at 5267.165 kb on + strand, within PFR28_04613at 5267.180 kb on + strand, within PFR28_04613at 5267.180 kb on + strand, within PFR28_04613at 5267.180 kb on + strand, within PFR28_04613at 5267.181 kb on - strand, within PFR28_04613at 5267.181 kb on - strand, within PFR28_04613at 5267.181 kb on - strand, within PFR28_04613at 5267.337 kb on + strand, within PFR28_04613at 5267.391 kb on + strand, within PFR28_04613at 5267.391 kb on + strand, within PFR28_04613at 5267.391 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.473 kb on + strand, within PFR28_04613at 5267.474 kb on - strand, within PFR28_04613at 5267.474 kb on - strand, within PFR28_04613at 5267.474 kb on - strand, within PFR28_04613at 5267.474 kb on - strand, within PFR28_04613at 5267.474 kb on - strand, within PFR28_04613at 5267.474 kb on - strand, within PFR28_04613at 5267.547 kb on + strand, within PFR28_04613at 5267.547 kb on + strand, within PFR28_04613at 5267.548 kb on - strand, within PFR28_04613at 5267.548 kb on - strand, within PFR28_04613at 5267.548 kb on - strand, within PFR28_04613at 5267.548 kb on - strand, within PFR28_04613at 5267.622 kb on - strandat 5267.790 kb on + strand, within PFR28_04614at 5267.790 kb on + strand, within PFR28_04614at 5267.790 kb on + strand, within PFR28_04614at 5267.790 kb on + strand, within PFR28_04614at 5267.790 kb on + strand, within PFR28_04614at 5267.791 kb on - strand, within PFR28_04614at 5267.791 kb on - strand, within PFR28_04614at 5267.791 kb on - strand, within PFR28_04614at 5267.791 kb on - strand, within PFR28_04614at 5267.823 kb on - strand, within PFR28_04614at 5267.835 kb on + strand, within PFR28_04614at 5267.835 kb on + strand, within PFR28_04614at 5267.835 kb on + strand, within PFR28_04614at 5267.836 kb on - strand, within PFR28_04614at 5267.836 kb on - strand, within PFR28_04614at 5267.879 kb on + strand, within PFR28_04614at 5267.879 kb on + strand, within PFR28_04614at 5267.879 kb on + strand, within PFR28_04614at 5267.880 kb on - strand, within PFR28_04614at 5267.880 kb on - strand, within PFR28_04614at 5267.880 kb on - strand, within PFR28_04614at 5267.880 kb on - strand, within PFR28_04614at 5267.880 kb on - strand, within PFR28_04614at 5267.880 kb on - strand, within PFR28_04614at 5267.880 kb on - strand, within PFR28_04614at 5268.064 kb on + strand, within PFR28_04614at 5268.065 kb on - strand, within PFR28_04614at 5268.515 kb on + strand, within PFR28_04614at 5268.515 kb on + strand, within PFR28_04614at 5268.515 kb on + strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.516 kb on - strand, within PFR28_04614at 5268.523 kb on + strand, within PFR28_04614at 5268.523 kb on + strand, within PFR28_04614at 5268.575 kb on + strandat 5268.576 kb on - strandat 5268.576 kb on - strandat 5268.628 kb on - strandat 5268.634 kb on + strandat 5268.634 kb on + strandat 5268.634 kb on + strandat 5268.634 kb on + strandat 5268.635 kb on - strandat 5268.635 kb on - strandat 5268.635 kb on - strandat 5268.661 kb on - strandat 5268.717 kb on + strandat 5268.717 kb on + strandat 5268.717 kb on + strandat 5268.718 kb on - strandat 5268.728 kb on + strandat 5268.728 kb on + strandat 5268.729 kb on - strandat 5268.729 kb on - strandat 5268.730 kb on + strandat 5268.730 kb on + strandat 5268.731 kb on - strandat 5268.731 kb on - strandat 5268.731 kb on - strandat 5268.731 kb on - strandat 5268.731 kb on - strandat 5268.740 kb on + strandat 5268.746 kb on + strandat 5268.746 kb on + strandat 5268.747 kb on - strandat 5268.747 kb on - strandat 5268.776 kb on + strandat 5268.859 kb on + strandat 5268.859 kb on + strandat 5268.859 kb on + strandat 5268.860 kb on - strandat 5268.860 kb on - strandat 5268.896 kb on + strandat 5269.281 kb on + strandat 5269.360 kb on + strandat 5269.361 kb on - strandat 5269.412 kb on + strand, within PFR28_04615at 5269.412 kb on + strand, within PFR28_04615at 5269.412 kb on + strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.413 kb on - strand, within PFR28_04615at 5269.440 kb on + strand, within PFR28_04615at 5269.440 kb on + strand, within PFR28_04615at 5269.441 kb on - strand, within PFR28_04615at 5269.497 kb on + strand, within PFR28_04615at 5269.497 kb on + strand, within PFR28_04615at 5269.497 kb on + strand, within PFR28_04615at 5269.498 kb on - strand, within PFR28_04615at 5269.498 kb on - strand, within PFR28_04615at 5269.608 kb on + strand, within PFR28_04615at 5269.608 kb on + strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615at 5269.609 kb on - strand, within PFR28_04615

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 2.5 mM
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5,266,664 - PFR28_04612 0.70 +1.3
5,266,713 + PFR28_04612 0.76 -3.0
5,266,713 + PFR28_04612 0.76 +0.6
5,266,713 + PFR28_04612 0.76 -3.8
5,266,713 + PFR28_04612 0.76 +0.3
5,266,713 + PFR28_04612 0.76 +1.5
5,266,713 + PFR28_04612 0.76 +1.8
5,266,713 + PFR28_04612 0.76 +0.6
5,266,714 - PFR28_04612 0.76 -3.5
5,266,714 - PFR28_04612 0.76 +1.7
5,266,714 - PFR28_04612 0.76 -1.0
5,266,714 - PFR28_04612 0.76 -4.0
5,266,714 - PFR28_04612 0.76 -0.4
5,266,714 - PFR28_04612 0.76 -1.4
5,266,729 + PFR28_04612 0.78 +2.1
5,266,729 + PFR28_04612 0.78 -0.7
5,266,729 + PFR28_04612 0.78 +1.2
5,266,729 + PFR28_04612 0.78 -3.5
5,266,730 - PFR28_04612 0.78 +0.2
5,266,730 - PFR28_04612 0.78 +2.5
5,266,730 - PFR28_04612 0.78 +0.1
5,266,730 - PFR28_04612 0.78 -0.1
5,266,730 - PFR28_04612 0.78 +2.1
5,266,730 - PFR28_04612 0.78 -2.0
5,266,730 - PFR28_04612 0.78 -3.9
5,266,758 + PFR28_04612 0.82 -0.2
5,266,758 + PFR28_04612 0.82 -2.0
5,266,758 + PFR28_04612 0.82 -3.6
5,266,759 - PFR28_04612 0.82 -0.3
5,266,759 - PFR28_04612 0.82 -3.2
5,266,759 - PFR28_04612 0.82 -3.5
5,266,887 + +0.1
5,266,887 + -3.2
5,266,904 + +2.4
5,266,905 - +4.6
5,266,905 - +1.5
5,266,905 - +1.1
5,266,905 - -1.3
5,266,905 - -3.1
5,266,963 - -2.2
5,266,963 - +2.0
5,266,979 - -3.4
5,267,153 - PFR28_04613 0.26 +5.6
5,267,165 + PFR28_04613 0.28 +0.1
5,267,165 + PFR28_04613 0.28 -2.0
5,267,180 + PFR28_04613 0.30 -3.7
5,267,180 + PFR28_04613 0.30 +0.7
5,267,180 + PFR28_04613 0.30 -1.4
5,267,181 - PFR28_04613 0.30 +0.1
5,267,181 - PFR28_04613 0.30 -3.3
5,267,181 - PFR28_04613 0.30 +0.9
5,267,337 + PFR28_04613 0.53 -1.0
5,267,391 + PFR28_04613 0.61 -2.9
5,267,391 + PFR28_04613 0.61 -2.1
5,267,391 + PFR28_04613 0.61 -2.9
5,267,473 + PFR28_04613 0.73 +0.4
5,267,473 + PFR28_04613 0.73 -2.6
5,267,473 + PFR28_04613 0.73 -3.3
5,267,473 + PFR28_04613 0.73 -1.4
5,267,473 + PFR28_04613 0.73 -3.4
5,267,473 + PFR28_04613 0.73 +2.1
5,267,473 + PFR28_04613 0.73 +2.7
5,267,473 + PFR28_04613 0.73 +1.3
5,267,474 - PFR28_04613 0.74 +2.1
5,267,474 - PFR28_04613 0.74 -0.7
5,267,474 - PFR28_04613 0.74 -0.1
5,267,474 - PFR28_04613 0.74 -3.5
5,267,474 - PFR28_04613 0.74 +1.7
5,267,474 - PFR28_04613 0.74 -2.8
5,267,547 + PFR28_04613 0.84 +0.8
5,267,547 + PFR28_04613 0.84 -1.8
5,267,548 - PFR28_04613 0.85 -0.2
5,267,548 - PFR28_04613 0.85 -1.1
5,267,548 - PFR28_04613 0.85 -1.9
5,267,548 - PFR28_04613 0.85 +1.1
5,267,622 - -3.5
5,267,790 + PFR28_04614 0.14 -0.4
5,267,790 + PFR28_04614 0.14 +0.2
5,267,790 + PFR28_04614 0.14 +1.0
5,267,790 + PFR28_04614 0.14 +0.4
5,267,790 + PFR28_04614 0.14 -3.6
5,267,791 - PFR28_04614 0.14 -2.9
5,267,791 - PFR28_04614 0.14 +2.1
5,267,791 - PFR28_04614 0.14 +0.8
5,267,791 - PFR28_04614 0.14 +0.9
5,267,823 - PFR28_04614 0.17 -3.7
5,267,835 + PFR28_04614 0.18 +0.8
5,267,835 + PFR28_04614 0.18 -3.1
5,267,835 + PFR28_04614 0.18 -0.8
5,267,836 - PFR28_04614 0.18 -1.1
5,267,836 - PFR28_04614 0.18 -0.2
5,267,879 + PFR28_04614 0.23 -0.9
5,267,879 + PFR28_04614 0.23 -1.3
5,267,879 + PFR28_04614 0.23 -2.3
5,267,880 - PFR28_04614 0.23 +0.1
5,267,880 - PFR28_04614 0.23 +1.3
5,267,880 - PFR28_04614 0.23 -2.7
5,267,880 - PFR28_04614 0.23 +0.1
5,267,880 - PFR28_04614 0.23 +0.1
5,267,880 - PFR28_04614 0.23 -1.3
5,267,880 - PFR28_04614 0.23 +1.3
5,268,064 + PFR28_04614 0.41 -1.3
5,268,065 - PFR28_04614 0.41 +1.5
5,268,515 + PFR28_04614 0.86 +1.5
5,268,515 + PFR28_04614 0.86 +0.3
5,268,515 + PFR28_04614 0.86 -1.2
5,268,516 - PFR28_04614 0.86 +1.4
5,268,516 - PFR28_04614 0.86 +4.1
5,268,516 - PFR28_04614 0.86 -1.4
5,268,516 - PFR28_04614 0.86 +3.4
5,268,516 - PFR28_04614 0.86 -2.4
5,268,516 - PFR28_04614 0.86 +0.3
5,268,516 - PFR28_04614 0.86 -1.7
5,268,516 - PFR28_04614 0.86 +0.4
5,268,523 + PFR28_04614 0.87 +4.0
5,268,523 + PFR28_04614 0.87 -1.1
5,268,575 + -2.1
5,268,576 - +1.0
5,268,576 - +3.5
5,268,628 - +0.1
5,268,634 + +2.7
5,268,634 + +0.4
5,268,634 + -3.2
5,268,634 + -0.6
5,268,635 - +0.8
5,268,635 - -3.1
5,268,635 - -0.2
5,268,661 - +0.6
5,268,717 + +1.2
5,268,717 + +1.4
5,268,717 + -0.1
5,268,718 - +0.8
5,268,728 + +2.4
5,268,728 + -0.4
5,268,729 - -0.8
5,268,729 - +1.5
5,268,730 + +4.5
5,268,730 + +0.4
5,268,731 - +1.1
5,268,731 - +0.6
5,268,731 - +1.3
5,268,731 - -1.9
5,268,731 - -3.8
5,268,740 + -2.9
5,268,746 + +2.7
5,268,746 + +1.3
5,268,747 - +1.1
5,268,747 - +1.3
5,268,776 + +2.3
5,268,859 + +1.5
5,268,859 + +0.4
5,268,859 + +0.6
5,268,860 - +2.1
5,268,860 - +0.6
5,268,896 + +3.1
5,269,281 + -1.7
5,269,360 + +1.2
5,269,361 - +0.4
5,269,412 + PFR28_04615 0.12 +0.8
5,269,412 + PFR28_04615 0.12 +1.0
5,269,412 + PFR28_04615 0.12 -1.3
5,269,413 - PFR28_04615 0.12 -2.4
5,269,413 - PFR28_04615 0.12 -1.2
5,269,413 - PFR28_04615 0.12 -2.9
5,269,413 - PFR28_04615 0.12 -1.0
5,269,413 - PFR28_04615 0.12 +2.3
5,269,413 - PFR28_04615 0.12 +1.8
5,269,413 - PFR28_04615 0.12 +0.6
5,269,413 - PFR28_04615 0.12 -2.6
5,269,413 - PFR28_04615 0.12 +1.5
5,269,413 - PFR28_04615 0.12 -1.3
5,269,440 + PFR28_04615 0.13 -1.6
5,269,440 + PFR28_04615 0.13 +1.2
5,269,441 - PFR28_04615 0.13 -2.8
5,269,497 + PFR28_04615 0.17 +2.9
5,269,497 + PFR28_04615 0.17 +3.3
5,269,497 + PFR28_04615 0.17 +1.5
5,269,498 - PFR28_04615 0.17 +1.5
5,269,498 - PFR28_04615 0.17 +0.4
5,269,608 + PFR28_04615 0.23 +2.4
5,269,608 + PFR28_04615 0.23 +0.5
5,269,609 - PFR28_04615 0.23 -3.5
5,269,609 - PFR28_04615 0.23 -0.7
5,269,609 - PFR28_04615 0.23 +2.0
5,269,609 - PFR28_04615 0.23 -0.4
5,269,609 - PFR28_04615 0.23 +1.5
5,269,609 - PFR28_04615 0.23 +2.0
5,269,609 - PFR28_04615 0.23 -1.0
5,269,609 - PFR28_04615 0.23 -3.9

Or see this region's nucleotide sequence