Strain Fitness in Pseudomonas sp. RS175 around PFR28_03380

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 2.5 mM
3,886,442	+		PFR28_03379	0.16	+4.3
3,886,442	+		PFR28_03379	0.16	+0.5
3,886,443	-		PFR28_03379	0.17	+0.4
3,886,443	-		PFR28_03379	0.17	-1.3
3,886,443	-		PFR28_03379	0.17	-3.8
3,886,493	+		PFR28_03379	0.22	-1.5
3,886,493	+		PFR28_03379	0.22	+0.5
3,886,493	+		PFR28_03379	0.22	+1.7
3,886,493	+		PFR28_03379	0.22	+0.5
3,886,493	+		PFR28_03379	0.22	+0.5
3,886,493	+		PFR28_03379	0.22	-2.9
3,886,739	-		PFR28_03379	0.50	-3.0
3,886,793	+		PFR28_03379	0.56	-1.9
3,886,794	-		PFR28_03379	0.57	+0.9
3,886,898	+		PFR28_03379	0.68	+1.3
3,886,899	-		PFR28_03379	0.68	-1.1
3,886,899	-		PFR28_03379	0.68	-1.4
3,886,899	-		PFR28_03379	0.68	-3.4
3,886,899	-		PFR28_03379	0.68	+0.0
3,886,901	+		PFR28_03379	0.69	+1.0
3,886,925	+		PFR28_03379	0.71	-0.7
3,886,925	+		PFR28_03379	0.71	-3.4
3,886,925	+		PFR28_03379	0.71	+1.9
3,886,925	+		PFR28_03379	0.71	-0.1
3,886,925	+		PFR28_03379	0.71	-0.7
3,886,925	+		PFR28_03379	0.71	+1.9
3,886,925	+		PFR28_03379	0.71	-2.5
3,886,925	+		PFR28_03379	0.71	-1.1
3,886,926	-		PFR28_03379	0.72	+1.2
3,886,926	-		PFR28_03379	0.72	-0.1
3,886,926	-		PFR28_03379	0.72	+0.4
3,886,926	-		PFR28_03379	0.72	+1.2
3,886,926	-		PFR28_03379	0.72	+1.4
3,886,926	-		PFR28_03379	0.72	+1.0
3,886,926	-		PFR28_03379	0.72	+1.1
3,886,926	-		PFR28_03379	0.72	-2.0
3,886,926	-		PFR28_03379	0.72	+5.2
3,886,926	-		PFR28_03379	0.72	+0.3
3,886,926	-		PFR28_03379	0.72	-0.1
3,886,926	-		PFR28_03379	0.72	-4.1
3,886,926	-		PFR28_03379	0.72	-2.0
3,887,078	+		PFR28_03379	0.89	-3.0
3,887,078	+		PFR28_03379	0.89	-0.3
3,887,078	+		PFR28_03379	0.89	+1.8
3,887,078	+		PFR28_03379	0.89	-0.4
3,887,078	+		PFR28_03379	0.89	-4.0
3,887,079	-		PFR28_03379	0.89	+1.2
3,887,079	-		PFR28_03379	0.89	+0.0
3,887,221	+				-2.6
3,887,221	+				-1.7
3,887,221	+				+0.1
3,887,221	+				+3.3
3,887,221	+				-0.5
3,887,222	-				-0.9
3,887,222	-				+1.7
3,887,222	-				+1.0
3,887,222	-				+0.3
3,887,222	-				+0.1
3,887,262	-				-0.4
3,887,298	+				-0.1
3,887,298	+				-0.2
3,887,627	+		PFR28_03380	0.36	+3.0
3,887,628	-		PFR28_03380	0.36	+1.7
3,887,798	+		PFR28_03380	0.55	+2.3
3,887,867	+		PFR28_03380	0.63	+1.8
3,887,867	+		PFR28_03380	0.63	-2.7
3,887,867	+		PFR28_03380	0.63	-1.7
3,887,867	+		PFR28_03380	0.63	+0.1
3,887,867	+		PFR28_03380	0.63	-3.8
3,887,867	+		PFR28_03380	0.63	+1.8
3,887,868	-		PFR28_03380	0.63	-0.5
3,887,868	-		PFR28_03380	0.63	-0.7
3,887,868	-		PFR28_03380	0.63	-1.3
3,887,868	-		PFR28_03380	0.63	+1.7
3,887,868	-		PFR28_03380	0.63	-0.7
3,887,868	-		PFR28_03380	0.63	-1.7
3,887,868	-		PFR28_03380	0.63	-1.8
3,887,868	-		PFR28_03380	0.63	-0.3
3,887,868	-		PFR28_03380	0.63	-1.9
3,887,868	-		PFR28_03380	0.63	+2.0
3,887,868	-		PFR28_03380	0.63	+0.9
3,888,008	+		PFR28_03380	0.79	+2.8
3,888,008	+		PFR28_03380	0.79	+0.6
3,888,086	+		PFR28_03380	0.88	+0.1
3,888,086	+		PFR28_03380	0.88	-0.8
3,888,086	+		PFR28_03380	0.88	+1.4
3,888,086	+		PFR28_03380	0.88	+0.4
3,888,086	+		PFR28_03380	0.88	+0.1
3,888,086	+		PFR28_03380	0.88	+1.6
3,888,086	+		PFR28_03380	0.88	-1.8
3,888,086	+		PFR28_03380	0.88	+1.0
3,888,086	+		PFR28_03380	0.88	+2.4
3,888,086	+		PFR28_03380	0.88	-1.6
3,888,086	+		PFR28_03380	0.88	+1.0
3,888,086	+		PFR28_03380	0.88	+0.0
3,888,086	+		PFR28_03380	0.88	-3.9
3,888,086	+		PFR28_03380	0.88	-2.6
3,888,087	-		PFR28_03380	0.88	-0.1
3,888,087	-		PFR28_03380	0.88	-0.4
3,888,087	-		PFR28_03380	0.88	+0.4
3,888,087	-		PFR28_03380	0.88	-1.3
3,888,087	-		PFR28_03380	0.88	+0.7
3,888,087	-		PFR28_03380	0.88	-0.1
3,888,087	-		PFR28_03380	0.88	-1.7
3,888,087	-		PFR28_03380	0.88	+0.5
3,888,087	-		PFR28_03380	0.88	-4.0
3,888,087	-		PFR28_03380	0.88	+0.6
3,888,087	-		PFR28_03380	0.88	-2.9
3,888,087	-		PFR28_03380	0.88	-0.3
3,888,087	-		PFR28_03380	0.88	-1.8
3,888,095	+		PFR28_03380	0.89	+4.2
3,888,095	+		PFR28_03380	0.89	+0.1
3,888,095	+		PFR28_03380	0.89	+3.7
3,888,095	+		PFR28_03380	0.89	-0.1
3,888,095	+		PFR28_03380	0.89	+1.5
3,888,095	+		PFR28_03380	0.89	+1.4
3,888,095	+		PFR28_03380	0.89	-3.6
3,888,095	+		PFR28_03380	0.89	+0.8
3,888,095	+		PFR28_03380	0.89	+0.8
3,888,095	+		PFR28_03380	0.89	+0.8
3,888,095	+		PFR28_03380	0.89	-2.7
3,888,096	-		PFR28_03380	0.89	+0.6
3,888,096	-		PFR28_03380	0.89	+0.1
3,888,096	-		PFR28_03380	0.89	+1.3
3,888,096	-		PFR28_03380	0.89	+1.4
3,888,096	-		PFR28_03380	0.89	-1.1
3,888,096	-		PFR28_03380	0.89	+0.6
3,888,096	-		PFR28_03380	0.89	-3.6
3,888,150	+				-2.7
3,888,151	-				-4.1
3,888,151	-				+1.4
3,888,191	+				-3.6
3,888,191	+				+1.8
3,888,191	+				-1.7
3,888,191	+				+2.6
3,888,191	+				-3.1
3,888,192	-				-1.7
3,888,192	-				-0.0
3,888,266	-				+1.5
3,888,316	+				-1.6
3,888,316	+				+0.9
3,888,317	-				-3.6
3,888,317	-				-3.9
3,888,350	+				+3.0
3,888,351	-				+1.1
3,888,351	-				-0.5
3,888,367	+				+2.8
3,888,367	+				+0.5
3,888,367	+				+3.7
3,888,367	+				-1.7
3,888,367	+				+1.1
3,888,367	+				+1.2
3,888,367	+				-2.9
3,888,368	-				+0.4
3,888,368	-				+0.6
3,888,368	-				+0.4
3,888,368	-				+0.3
3,888,368	-				-0.7
3,888,368	-				+0.3
3,888,368	-				+1.0
3,888,368	-				+0.1
3,888,522	-				-3.3
3,888,616	+		PFR28_03381	0.14	+1.0
3,888,708	+		PFR28_03381	0.20	-2.1
3,888,708	+		PFR28_03381	0.20	+3.4
3,888,708	+		PFR28_03381	0.20	+1.7
3,888,708	+		PFR28_03381	0.20	+1.6
3,888,708	+		PFR28_03381	0.20	-1.7
3,888,708	+		PFR28_03381	0.20	+2.5
3,888,708	+		PFR28_03381	0.20	+1.7
3,888,708	+		PFR28_03381	0.20	-0.5
3,888,708	+		PFR28_03381	0.20	+0.4
3,888,708	+		PFR28_03381	0.20	+0.5
3,888,708	+		PFR28_03381	0.20	-1.1
3,888,708	+		PFR28_03381	0.20	-4.2
3,888,709	-		PFR28_03381	0.20	-2.7
3,888,709	-		PFR28_03381	0.20	-1.1
3,888,709	-		PFR28_03381	0.20	-1.9
3,888,709	-		PFR28_03381	0.20	+2.7
3,888,709	-		PFR28_03381	0.20	+1.9
3,888,709	-		PFR28_03381	0.20	+2.6
3,888,915	-		PFR28_03381	0.34	+1.2
3,888,915	-		PFR28_03381	0.34	-2.3
3,888,915	-		PFR28_03381	0.34	+1.2