Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF808 and GFF809 are separated by 44 nucleotides GFF809 and GFF810 are separated by 20 nucleotides GFF810 and GFF811 overlap by 29 nucleotides GFF811 and GFF812 overlap by 1 nucleotides GFF812 and GFF813 are separated by 126 nucleotides
GFF808 - Phage major tail protein, at 154,190 to 154,933
GFF808
GFF809 - Phage minor tail protein, at 154,978 to 155,382
GFF809
GFF810 - Phage minor tail protein, at 155,403 to 155,717
GFF810
GFF811 - Phage tail length tape-measure protein 1, at 155,689 to 158,850
GFF811
GFF812 - Phage minor tail protein, at 158,850 to 159,179
GFF812
GFF813 - Attachment invasion locus protein precursor, at 159,306 to 159,824
GFF813
Position (kb) 155
156
157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 154.741 kb on + strand, within GFF808 at 155.001 kb on + strand at 155.001 kb on + strand at 155.006 kb on - strand at 155.006 kb on - strand at 155.071 kb on - strand, within GFF809 at 155.142 kb on + strand, within GFF809 at 155.226 kb on - strand, within GFF809 at 155.228 kb on - strand, within GFF809 at 155.343 kb on + strand at 155.609 kb on - strand, within GFF810 at 155.790 kb on + strand at 155.932 kb on + strand at 155.932 kb on + strand at 156.311 kb on + strand, within GFF811 at 156.311 kb on + strand, within GFF811 at 156.357 kb on + strand, within GFF811 at 156.361 kb on + strand, within GFF811 at 156.714 kb on + strand, within GFF811 at 156.877 kb on - strand, within GFF811 at 157.021 kb on + strand, within GFF811 at 157.228 kb on - strand, within GFF811 at 157.333 kb on + strand, within GFF811 at 157.354 kb on + strand, within GFF811 at 157.569 kb on + strand, within GFF811 at 157.769 kb on + strand, within GFF811 at 157.770 kb on - strand, within GFF811 at 158.058 kb on - strand, within GFF811 at 158.122 kb on + strand, within GFF811 at 158.388 kb on + strand, within GFF811 at 158.509 kb on + strand, within GFF811 at 158.628 kb on + strand at 158.701 kb on + strand at 158.701 kb on + strand at 158.882 kb on + strand at 158.963 kb on + strand, within GFF812 at 158.979 kb on + strand, within GFF812 at 158.993 kb on - strand, within GFF812 at 159.078 kb on + strand, within GFF812 at 159.194 kb on - strand at 159.287 kb on - strand at 159.334 kb on + strand at 159.380 kb on + strand, within GFF813 at 159.386 kb on - strand, within GFF813 at 159.404 kb on + strand, within GFF813 at 159.532 kb on - strand, within GFF813 at 159.616 kb on - strand, within GFF813 at 159.619 kb on + strand, within GFF813 at 159.620 kb on - strand, within GFF813 at 159.662 kb on + strand, within GFF813 at 159.662 kb on + strand, within GFF813 at 159.725 kb on + strand, within GFF813 at 159.744 kb on + strand, within GFF813 at 159.750 kb on + strand, within GFF813 at 159.750 kb on + strand, within GFF813 at 159.750 kb on + strand, within GFF813 at 159.751 kb on - strand, within GFF813
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 154,741 + GFF808 0.74 +1.0 155,001 + -0.3 155,001 + +0.3 155,006 - +0.0 155,006 - -0.8 155,071 - GFF809 0.23 +2.5 155,142 + GFF809 0.40 +0.4 155,226 - GFF809 0.61 +0.4 155,228 - GFF809 0.62 +2.7 155,343 + -1.6 155,609 - GFF810 0.65 +0.9 155,790 + -0.2 155,932 + +0.3 155,932 + -0.4 156,311 + GFF811 0.20 -0.5 156,311 + GFF811 0.20 -0.3 156,357 + GFF811 0.21 +0.5 156,361 + GFF811 0.21 +0.7 156,714 + GFF811 0.32 +0.7 156,877 - GFF811 0.38 -0.2 157,021 + GFF811 0.42 +0.3 157,228 - GFF811 0.49 +0.6 157,333 + GFF811 0.52 +3.5 157,354 + GFF811 0.53 -1.8 157,569 + GFF811 0.59 +0.4 157,769 + GFF811 0.66 -0.8 157,770 - GFF811 0.66 +0.3 158,058 - GFF811 0.75 +0.3 158,122 + GFF811 0.77 +0.8 158,388 + GFF811 0.85 +1.7 158,509 + GFF811 0.89 +0.3 158,628 + +0.5 158,701 + -0.1 158,701 + -1.4 158,882 + -0.2 158,963 + GFF812 0.34 +0.5 158,979 + GFF812 0.39 +1.5 158,993 - GFF812 0.43 -0.7 159,078 + GFF812 0.69 -0.7 159,194 - -0.5 159,287 - -1.6 159,334 + +2.6 159,380 + GFF813 0.14 +0.0 159,386 - GFF813 0.15 -0.6 159,404 + GFF813 0.19 +3.3 159,532 - GFF813 0.44 +0.9 159,616 - GFF813 0.60 -0.8 159,619 + GFF813 0.60 -1.3 159,620 - GFF813 0.61 +0.7 159,662 + GFF813 0.69 -0.3 159,662 + GFF813 0.69 -0.0 159,725 + GFF813 0.81 +0.6 159,744 + GFF813 0.84 +0.7 159,750 + GFF813 0.86 +0.1 159,750 + GFF813 0.86 -0.1 159,750 + GFF813 0.86 +0.1 159,751 - GFF813 0.86 -1.0
Or see this region's nucleotide sequence